EWM24337.1, cds6324 (CDS) Nannochloropsis gaditana

Overview
NameEWM24337.1
Unique Namecds6324
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:289578..289660 -
Alignment locationCM002468.1:289137..289329 -
Alignment locationCM002468.1:288828..288926 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24337.1
Producttubulin-specific chaperone a
Orig transcript idgnl|cribi|Naga_100105g19.10576.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:289578..289660 -
CM002468.1supercontigCM002468.1:289137..289329 -
CM002468.1supercontigCM002468.1:288828..288926 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0007021tubulin complex assembly
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005856cytoskeleton
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0051082unfolded protein binding
GO:0015631tubulin binding
Vocabulary: INTERPRO
TermDefinition
IPR004226CofA_tubulin-bd
Homology
BLAST of EWM24337.1 vs. NCBI_GenBank
Match: gi|585105731|gb|EWM24337.1| (tubulin-specific chaperone a [Nannochloropsis gaditana])

HSP 1 Score: 248.44 bits (633), Expect = 2.165e-83
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
Query:    1 MGSLTDQNTAGTDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDSYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQESDVYAEANELATQLVTADSSG 124
            MGSLTDQNTAGTDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDSYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQESDVYAEANELATQLVTADSSG
Sbjct:    1 MGSLTDQNTAGTDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDSYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQESDVYAEANELATQLVTADSSG 124          
BLAST of EWM24337.1 vs. NCBI_GenBank
Match: gi|553187044|ref|XP_005854539.1| (tubulin-specific chaperone a [Nannochloropsis gaditana CCMP526] >gi|422294521|gb|EKU21821.1| tubulin-specific chaperone a [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 245.743 bits (626), Expect = 2.824e-82
Identity = 122/124 (98.39%), Postives = 123/124 (99.19%), Query Frame = 0
Query:    1 MGSLTDQNTAGTDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDSYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQESDVYAEANELATQLVTADSSG 124
            MG LTDQNTAGTDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRD+YDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQESDVYAEANELATQLVTADSSG
Sbjct:    1 MGPLTDQNTAGTDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDTYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQESDVYAEANELATQLVTADSSG 124          
BLAST of EWM24337.1 vs. NCBI_GenBank
Match: gi|299116253|emb|CBN74602.1| (putative: Beta-tubulin folding cofactor A [Ectocarpus siliculosus])

HSP 1 Score: 107.842 bits (268), Expect = 5.215e-28
Identity = 51/78 (65.38%), Postives = 62/78 (79.49%), Query Frame = 0
Query:   17 RQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDSYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQ 94
            RQLKIK+GV +R++KE ASYE EA   E K+  MR +G+D+YDI+KQEEVLQESYMMIPDSKSRL  ALE +  FL +
Sbjct:    6 RQLKIKLGVCKRMVKEVASYEVEAKENEAKVQKMRDDGKDAYDIRKQEEVLQESYMMIPDSKSRLAKALEDMEGFLGE 83          
BLAST of EWM24337.1 vs. NCBI_GenBank
Match: gi|925679330|gb|KOX76266.1| (Tubulin-specific chaperone A [Melipona quadrifasciata])

HSP 1 Score: 99.7525 bits (247), Expect = 1.076e-24
Identity = 52/102 (50.98%), Postives = 69/102 (67.65%), Query Frame = 0
Query:   12 TDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDSYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQESDVYAEANEL 113
            +D  +R LKIK GV +RL KE  +YEKEAA Q ++I  ++ + +D YDIKKQEEVLQES MM+PD + RL  A E L   L   +D+KEV   +VY EA ++
Sbjct:    2 SDPRIRTLKIKTGVVKRLAKEKVTYEKEAAQQRERIQKLKEQDKDGYDIKKQEEVLQESLMMVPDCQRRLVKAFEELKKILDTEQDLKEV---EVYIEAEKV 100          
BLAST of EWM24337.1 vs. NCBI_GenBank
Match: gi|795115815|ref|XP_011883117.1| (PREDICTED: tubulin-specific chaperone A [Vollenhovia emeryi])

HSP 1 Score: 98.9821 bits (245), Expect = 1.960e-24
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = 0
Query:   12 TDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDSYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQ 102
            +D  +R LKIK GV +RL KE  +YEKEAA Q ++I  ++ + +DSYDIKKQEEVLQES MM+PD + RL  A E L   L   +D+KEV+
Sbjct:    2 SDPRIRTLKIKTGVVKRLAKEKVTYEKEAAQQRERIQKLKDQDKDSYDIKKQEEVLQESLMMVPDCQRRLVKAFEELKKILDTEQDLKEVE 92          
BLAST of EWM24337.1 vs. NCBI_GenBank
Match: gi|817086940|ref|XP_012266222.1| (tubulin-specific chaperone A [Athalia rosae])

HSP 1 Score: 98.9821 bits (245), Expect = 2.092e-24
Identity = 51/102 (50.00%), Postives = 68/102 (66.67%), Query Frame = 0
Query:   12 TDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDSYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQESDVYAEANEL 113
            +D  +R LKIK GV +RL KE  +YEKEAA Q  +I  ++ +G+D YDI+KQEEVLQES MM+PD + RL  A E L   L   +D+KEV   + Y EA ++
Sbjct:    2 SDPRIRTLKIKTGVVKRLAKEKITYEKEAAQQRDRIQKLKDQGKDEYDIRKQEEVLQESLMMVPDCQRRLVKAFEELKKILESEQDLKEV---EAYVEAEKV 100          
BLAST of EWM24337.1 vs. NCBI_GenBank
Match: gi|350416812|ref|XP_003491115.1| (PREDICTED: tubulin-specific chaperone A-like [Bombus impatiens] >gi|808145307|ref|XP_012173895.1| tubulin-specific chaperone A isoform X2 [Bombus terrestris])

HSP 1 Score: 98.5969 bits (244), Expect = 3.165e-24
Identity = 52/102 (50.98%), Postives = 69/102 (67.65%), Query Frame = 0
Query:   12 TDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDSYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQESDVYAEANEL 113
            +D  +R LKIK GV +RL KE  +YEKEAA Q ++I  ++ + +D YDIKKQEEVLQES MMIPD + RL  A E L   L   +D+KEV++   Y EA ++
Sbjct:    2 SDPRIRTLKIKTGVVKRLAKEKVTYEKEAAQQRERIQKLKEQDKDGYDIKKQEEVLQESLMMIPDCQRRLVKAFEELKKILDTEQDLKEVED---YIEAEKV 100          
BLAST of EWM24337.1 vs. NCBI_GenBank
Match: gi|801385395|ref|XP_012055959.1| (PREDICTED: tubulin-specific chaperone A [Atta cephalotes] >gi|1070149784|ref|XP_018339289.1| PREDICTED: tubulin-specific chaperone A [Trachymyrmex septentrionalis])

HSP 1 Score: 98.2117 bits (243), Expect = 3.647e-24
Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 0
Query:   12 TDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDSYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQESDVYAEANEL 113
            +D  +R LKIK GV +RL KE  +YEKEAA Q ++I  ++ + +D YDIKKQEEVLQES MM+PD + RL  A E L   L   +D+KEV++   Y EA ++
Sbjct:    2 SDPRIRTLKIKTGVVKRLAKEKVTYEKEAAQQRERIQKLKEQDKDGYDIKKQEEVLQESLMMVPDCQRRLVKAFEELKKILETEQDLKEVED---YIEAEKI 100          
BLAST of EWM24337.1 vs. NCBI_GenBank
Match: gi|769853959|ref|XP_011638494.1| (PREDICTED: tubulin-specific chaperone A [Pogonomyrmex barbatus])

HSP 1 Score: 98.2117 bits (243), Expect = 4.894e-24
Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 0
Query:   12 TDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDSYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQESDVYAEANEL 113
            +D  +R LKIK GV +RL KE  +YEKEAA Q ++I  ++ + +D YDIKKQEEVLQES MM+PD + RL  A E L   L   +D+KEV++   Y EA ++
Sbjct:    2 SDPRIRTLKIKTGVVKRLAKEKVTYEKEAAQQRERIQKLKEQDKDGYDIKKQEEVLQESLMMVPDCQRRLVKAFEELKKILDTEQDLKEVED---YIEAEKV 100          
BLAST of EWM24337.1 vs. NCBI_GenBank
Match: gi|1070615427|ref|XP_018405789.1| (PREDICTED: tubulin-specific chaperone A [Cyphomyrmex costatus] >gi|1009368588|gb|KYM93433.1| Tubulin-specific chaperone A [Cyphomyrmex costatus])

HSP 1 Score: 97.8265 bits (242), Expect = 5.168e-24
Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 0
Query:   12 TDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDSYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQESDVYAEANEL 113
            +D  +R LKIK GV +RL KE  +YEKEAA Q ++I  ++ + +D YDIKKQEEVLQES MM+PD + RL  A E L   L   +D+KEV++   Y EA ++
Sbjct:    2 SDPRIRTLKIKTGVVKRLAKEKVTYEKEAAQQRERIQKLKEQDKDGYDIKKQEEVLQESLMMVPDCQRRLVKAFEELKKILDTEQDLKEVED---YIEAEKV 100          
The following BLAST results are available for this feature:
BLAST of EWM24337.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105731|gb|EWM24337.1|2.165e-83100.00tubulin-specific chaperone a [Nannochloropsis gadi... [more]
gi|553187044|ref|XP_005854539.1|2.824e-8298.39tubulin-specific chaperone a [Nannochloropsis gadi... [more]
gi|299116253|emb|CBN74602.1|5.215e-2865.38putative: Beta-tubulin folding cofactor A [Ectocar... [more]
gi|925679330|gb|KOX76266.1|1.076e-2450.98Tubulin-specific chaperone A [Melipona quadrifasci... [more]
gi|795115815|ref|XP_011883117.1|1.960e-2453.85PREDICTED: tubulin-specific chaperone A [Vollenhov... [more]
gi|817086940|ref|XP_012266222.1|2.092e-2450.00tubulin-specific chaperone A [Athalia rosae][more]
gi|350416812|ref|XP_003491115.1|3.165e-2450.98PREDICTED: tubulin-specific chaperone A-like [Bomb... [more]
gi|801385395|ref|XP_012055959.1|3.647e-2450.00PREDICTED: tubulin-specific chaperone A [Atta ceph... [more]
gi|769853959|ref|XP_011638494.1|4.894e-2450.00PREDICTED: tubulin-specific chaperone A [Pogonomyr... [more]
gi|1070615427|ref|XP_018405789.1|5.168e-2450.00PREDICTED: tubulin-specific chaperone A [Cyphomyrm... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6339rna6339Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications