EWM24337.1, cds6324 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24337.1 vs. NCBI_GenBank
Match: gi|585105731|gb|EWM24337.1| (tubulin-specific chaperone a [Nannochloropsis gaditana]) HSP 1 Score: 248.44 bits (633), Expect = 2.165e-83 Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
Query: 1 MGSLTDQNTAGTDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDSYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQESDVYAEANELATQLVTADSSG 124
MGSLTDQNTAGTDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDSYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQESDVYAEANELATQLVTADSSG
Sbjct: 1 MGSLTDQNTAGTDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDSYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQESDVYAEANELATQLVTADSSG 124
BLAST of EWM24337.1 vs. NCBI_GenBank
Match: gi|553187044|ref|XP_005854539.1| (tubulin-specific chaperone a [Nannochloropsis gaditana CCMP526] >gi|422294521|gb|EKU21821.1| tubulin-specific chaperone a [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 245.743 bits (626), Expect = 2.824e-82 Identity = 122/124 (98.39%), Postives = 123/124 (99.19%), Query Frame = 0
Query: 1 MGSLTDQNTAGTDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDSYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQESDVYAEANELATQLVTADSSG 124
MG LTDQNTAGTDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRD+YDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQESDVYAEANELATQLVTADSSG
Sbjct: 1 MGPLTDQNTAGTDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDTYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQESDVYAEANELATQLVTADSSG 124
BLAST of EWM24337.1 vs. NCBI_GenBank
Match: gi|299116253|emb|CBN74602.1| (putative: Beta-tubulin folding cofactor A [Ectocarpus siliculosus]) HSP 1 Score: 107.842 bits (268), Expect = 5.215e-28 Identity = 51/78 (65.38%), Postives = 62/78 (79.49%), Query Frame = 0
Query: 17 RQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDSYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQ 94
RQLKIK+GV +R++KE ASYE EA E K+ MR +G+D+YDI+KQEEVLQESYMMIPDSKSRL ALE + FL +
Sbjct: 6 RQLKIKLGVCKRMVKEVASYEVEAKENEAKVQKMRDDGKDAYDIRKQEEVLQESYMMIPDSKSRLAKALEDMEGFLGE 83
BLAST of EWM24337.1 vs. NCBI_GenBank
Match: gi|925679330|gb|KOX76266.1| (Tubulin-specific chaperone A [Melipona quadrifasciata]) HSP 1 Score: 99.7525 bits (247), Expect = 1.076e-24 Identity = 52/102 (50.98%), Postives = 69/102 (67.65%), Query Frame = 0
Query: 12 TDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDSYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQESDVYAEANEL 113
+D +R LKIK GV +RL KE +YEKEAA Q ++I ++ + +D YDIKKQEEVLQES MM+PD + RL A E L L +D+KEV +VY EA ++
Sbjct: 2 SDPRIRTLKIKTGVVKRLAKEKVTYEKEAAQQRERIQKLKEQDKDGYDIKKQEEVLQESLMMVPDCQRRLVKAFEELKKILDTEQDLKEV---EVYIEAEKV 100
BLAST of EWM24337.1 vs. NCBI_GenBank
Match: gi|795115815|ref|XP_011883117.1| (PREDICTED: tubulin-specific chaperone A [Vollenhovia emeryi]) HSP 1 Score: 98.9821 bits (245), Expect = 1.960e-24 Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = 0
Query: 12 TDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDSYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQ 102
+D +R LKIK GV +RL KE +YEKEAA Q ++I ++ + +DSYDIKKQEEVLQES MM+PD + RL A E L L +D+KEV+
Sbjct: 2 SDPRIRTLKIKTGVVKRLAKEKVTYEKEAAQQRERIQKLKDQDKDSYDIKKQEEVLQESLMMVPDCQRRLVKAFEELKKILDTEQDLKEVE 92
BLAST of EWM24337.1 vs. NCBI_GenBank
Match: gi|817086940|ref|XP_012266222.1| (tubulin-specific chaperone A [Athalia rosae]) HSP 1 Score: 98.9821 bits (245), Expect = 2.092e-24 Identity = 51/102 (50.00%), Postives = 68/102 (66.67%), Query Frame = 0
Query: 12 TDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDSYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQESDVYAEANEL 113
+D +R LKIK GV +RL KE +YEKEAA Q +I ++ +G+D YDI+KQEEVLQES MM+PD + RL A E L L +D+KEV + Y EA ++
Sbjct: 2 SDPRIRTLKIKTGVVKRLAKEKITYEKEAAQQRDRIQKLKDQGKDEYDIRKQEEVLQESLMMVPDCQRRLVKAFEELKKILESEQDLKEV---EAYVEAEKV 100
BLAST of EWM24337.1 vs. NCBI_GenBank
Match: gi|350416812|ref|XP_003491115.1| (PREDICTED: tubulin-specific chaperone A-like [Bombus impatiens] >gi|808145307|ref|XP_012173895.1| tubulin-specific chaperone A isoform X2 [Bombus terrestris]) HSP 1 Score: 98.5969 bits (244), Expect = 3.165e-24 Identity = 52/102 (50.98%), Postives = 69/102 (67.65%), Query Frame = 0
Query: 12 TDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDSYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQESDVYAEANEL 113
+D +R LKIK GV +RL KE +YEKEAA Q ++I ++ + +D YDIKKQEEVLQES MMIPD + RL A E L L +D+KEV++ Y EA ++
Sbjct: 2 SDPRIRTLKIKTGVVKRLAKEKVTYEKEAAQQRERIQKLKEQDKDGYDIKKQEEVLQESLMMIPDCQRRLVKAFEELKKILDTEQDLKEVED---YIEAEKV 100
BLAST of EWM24337.1 vs. NCBI_GenBank
Match: gi|801385395|ref|XP_012055959.1| (PREDICTED: tubulin-specific chaperone A [Atta cephalotes] >gi|1070149784|ref|XP_018339289.1| PREDICTED: tubulin-specific chaperone A [Trachymyrmex septentrionalis]) HSP 1 Score: 98.2117 bits (243), Expect = 3.647e-24 Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 0
Query: 12 TDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDSYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQESDVYAEANEL 113
+D +R LKIK GV +RL KE +YEKEAA Q ++I ++ + +D YDIKKQEEVLQES MM+PD + RL A E L L +D+KEV++ Y EA ++
Sbjct: 2 SDPRIRTLKIKTGVVKRLAKEKVTYEKEAAQQRERIQKLKEQDKDGYDIKKQEEVLQESLMMVPDCQRRLVKAFEELKKILETEQDLKEVED---YIEAEKI 100
BLAST of EWM24337.1 vs. NCBI_GenBank
Match: gi|769853959|ref|XP_011638494.1| (PREDICTED: tubulin-specific chaperone A [Pogonomyrmex barbatus]) HSP 1 Score: 98.2117 bits (243), Expect = 4.894e-24 Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 0
Query: 12 TDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDSYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQESDVYAEANEL 113
+D +R LKIK GV +RL KE +YEKEAA Q ++I ++ + +D YDIKKQEEVLQES MM+PD + RL A E L L +D+KEV++ Y EA ++
Sbjct: 2 SDPRIRTLKIKTGVVKRLAKEKVTYEKEAAQQRERIQKLKEQDKDGYDIKKQEEVLQESLMMVPDCQRRLVKAFEELKKILDTEQDLKEVED---YIEAEKV 100
BLAST of EWM24337.1 vs. NCBI_GenBank
Match: gi|1070615427|ref|XP_018405789.1| (PREDICTED: tubulin-specific chaperone A [Cyphomyrmex costatus] >gi|1009368588|gb|KYM93433.1| Tubulin-specific chaperone A [Cyphomyrmex costatus]) HSP 1 Score: 97.8265 bits (242), Expect = 5.168e-24 Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 0
Query: 12 TDELLRQLKIKVGVARRLIKEAASYEKEAAAQEQKIAGMRTEGRDSYDIKKQEEVLQESYMMIPDSKSRLQAALEHLAAFLTQSRDVKEVQESDVYAEANEL 113
+D +R LKIK GV +RL KE +YEKEAA Q ++I ++ + +D YDIKKQEEVLQES MM+PD + RL A E L L +D+KEV++ Y EA ++
Sbjct: 2 SDPRIRTLKIKTGVVKRLAKEKVTYEKEAAQQRERIQKLKEQDKDGYDIKKQEEVLQESLMMVPDCQRRLVKAFEELKKILDTEQDLKEVED---YIEAEKV 100 The following BLAST results are available for this feature:
BLAST of EWM24337.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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