EWM24357.1, cds6318 (CDS) Nannochloropsis gaditana

Overview
NameEWM24357.1
Unique Namecds6318
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:276284..276677 +
Alignment locationCM002468.1:276939..277036 +
Alignment locationCM002468.1:277168..277289 +
Alignment locationCM002468.1:277411..277792 +
Alignment locationCM002468.1:277894..278188 +
Alignment locationCM002468.1:278338..278495 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24357.1
Productradical sam domain protein
Orig transcript idgnl|cribi|Naga_100163g5.7195.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:276284..276677 +
CM002468.1supercontigCM002468.1:276939..277036 +
CM002468.1supercontigCM002468.1:277168..277289 +
CM002468.1supercontigCM002468.1:277411..277792 +
CM002468.1supercontigCM002468.1:277894..278188 +
CM002468.1supercontigCM002468.1:278338..278495 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0051536iron-sulfur cluster binding
GO:0003824catalytic activity
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR007197rSAM
IPR013785Aldolase_TIM
IPR006638Elp3/MiaB/NifB
Homology
BLAST of EWM24357.1 vs. NCBI_GenBank
Match: gi|585105753|gb|EWM24357.1| (radical sam domain protein [Nannochloropsis gaditana])

HSP 1 Score: 999.579 bits (2583), Expect = 0.000e+0
Identity = 482/482 (100.00%), Postives = 482/482 (100.00%), Query Frame = 0
Query:    1 MQQSLTPGNGMLLPRTLHYFPANVAVLSVCGSCLGFHTKQILRARHFWTCSCPRALGRQRPLSVTIRYASDKGTARGGAEPLWSPLKDFLGLDRLDTGQKLDISRRQLTELLTTNDRTLIKSMYAVAEAATTAYFGTKVYARGIVEFSNVCTKDCFYCGIRKHTKVHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTMDLACESPPFPSAGPNQRDFPSQRGLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHPASHSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEEHGEESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERRVRMAGKDLLLDGGWHDPPHFVRPSVE 482
            MQQSLTPGNGMLLPRTLHYFPANVAVLSVCGSCLGFHTKQILRARHFWTCSCPRALGRQRPLSVTIRYASDKGTARGGAEPLWSPLKDFLGLDRLDTGQKLDISRRQLTELLTTNDRTLIKSMYAVAEAATTAYFGTKVYARGIVEFSNVCTKDCFYCGIRKHTKVHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTMDLACESPPFPSAGPNQRDFPSQRGLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHPASHSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEEHGEESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERRVRMAGKDLLLDGGWHDPPHFVRPSVE
Sbjct:    1 MQQSLTPGNGMLLPRTLHYFPANVAVLSVCGSCLGFHTKQILRARHFWTCSCPRALGRQRPLSVTIRYASDKGTARGGAEPLWSPLKDFLGLDRLDTGQKLDISRRQLTELLTTNDRTLIKSMYAVAEAATTAYFGTKVYARGIVEFSNVCTKDCFYCGIRKHTKVHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTMDLACESPPFPSAGPNQRDFPSQRGLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHPASHSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEEHGEESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERRVRMAGKDLLLDGGWHDPPHFVRPSVE 482          
BLAST of EWM24357.1 vs. NCBI_GenBank
Match: gi|585105754|gb|EWM24358.1| (radical sam domain protein [Nannochloropsis gaditana])

HSP 1 Score: 728.398 bits (1879), Expect = 0.000e+0
Identity = 350/350 (100.00%), Postives = 350/350 (100.00%), Query Frame = 0
Query:  133 AYFGTKVYARGIVEFSNVCTKDCFYCGIRKHTKVHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTMDLACESPPFPSAGPNQRDFPSQRGLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHPASHSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEEHGEESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERRVRMAGKDLLLDGGWHDPPHFVRPSVE 482
            AYFGTKVYARGIVEFSNVCTKDCFYCGIRKHTKVHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTMDLACESPPFPSAGPNQRDFPSQRGLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHPASHSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEEHGEESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERRVRMAGKDLLLDGGWHDPPHFVRPSVE
Sbjct:   27 AYFGTKVYARGIVEFSNVCTKDCFYCGIRKHTKVHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTMDLACESPPFPSAGPNQRDFPSQRGLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHPASHSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEEHGEESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERRVRMAGKDLLLDGGWHDPPHFVRPSVE 376          
BLAST of EWM24357.1 vs. NCBI_GenBank
Match: gi|470487651|ref|XP_004344718.1| (radical SAM domain containing protein [Acanthamoeba castellanii str. Neff] >gi|440799932|gb|ELR20975.1| radical SAM domain containing protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 411.379 bits (1056), Expect = 7.813e-137
Identity = 209/424 (49.29%), Postives = 279/424 (65.80%), Query Frame = 0
Query:   64 VTIRYASDKGTARGGA-----------EPLWSPLKDFLGLDRLDTGQKLDISRRQLTELLTTNDRTLIKSMYAVAEAATTAYFGTKVYARGIVEFSNVCTKDCFYCGIRKHTKVHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTMDLACESPPFPSAGPNQRDFPSQRGLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHPASHSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEEHGEESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERRVRMAGKDLLLDGGWHDPPHF 476
            V  R A     +RGG            E   +PL   +G   L  G+ L + + Q+  +L T D  L  ++Y  A+  T  YFG K+Y RGIVEFSNVCTKDC+YCGIRKH +V RY+M+KEEI+ CA FAY  G G+LMLQSGELP+ +R+ F++D ++ ++R T++   E         N       + L VA+SLGEL   ++++  EAGA RYLLRIE+SNP LY +LHPA HS+  R +CL EL  +GFQVGTGVM+G+P QT+ D A DLLFFK +D DMIG+GPYI Q  TPLGKLW EE+      +       L   +T+M ALARI+ G+VNIAATTAL+A++P+GRE+AL +GAN++MPI+TP++ R  Y++YE KP ID+ A +  +CL+ RV+ AGK+L L   W DP HF
Sbjct:   41 VAARNALQAALSRGGKKRPVNRLHLPLEEKIAPLASLVG-RALTPGEPLTLEKEQIVHILQTADEGLENALYDYADTVTQRYFGKKIYFRGIVEFSNVCTKDCYYCGIRKHIQVKRYSMSKEEIVNCAIFAYESGYGSLMLQSGELPTDKRLAFLVDTIKEVKRVTIEKDKERNGVKEGVEN-------KSLGVAISLGELTKDMFRSLREAGAHRYLLRIESSNPDLYAKLHPADHSWHRRVECLRELNELGFQVGTGVMIGLPGQTLGDLAQDLLFFKSMDIDMIGMGPYICQKDTPLGKLWQEENSNLDTKRYNEK---LFRLSTKMVALARIICGDVNIAATTALQAINPQGREVALNQGANMLMPILTPRKYREDYQLYEGKPCIDEGAEECRSCLKNRVQWAGKELTLH-DWGDPQHF 452          
BLAST of EWM24357.1 vs. NCBI_GenBank
Match: gi|551580404|gb|AGA37362.2| (mitochondrial hydrogenase maturation protein, partial [Mastigamoeba balamuthi])

HSP 1 Score: 384.8 bits (987), Expect = 6.850e-127
Identity = 201/401 (50.12%), Postives = 272/401 (67.83%), Query Frame = 0
Query:   86 LKDFLGLDR--LDTGQKLDISRRQLTELLTTNDRTLIKS-MYAVAEAATTAYFGTKVYARGIVEFSNVCTKDCFYCGIRKHT---KVHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTMDLACESPPFPSAGPNQRDFPSQRGLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHPAS--HSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEEHGEESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERRVRMAGKDLLLDGGWHDPPHFVR 478
            ++  LGL R  +  GQ LD++R QLT+LL+ ND +  ++ ++ +AE      +G KVY RGIVEFSNVC K+C YCGIR+      + RYTM   EI+ CA +A  Q +GT+MLQSGE+  P RIN+++DV+  IR R+++                D   ++G+AVALS+GE    VY+   EAG  R+LLRIE+SNP LY  LHPA   H+++ R  CL +L R+GFQ+GTGVM+G+P Q+  D A D+LFFKE+D DMIG+GPY+VQ+ TP GK+W E HG E   ++E NR  LL  ++RM AL RI LG+ NIAATTAL+A+ P GREL LRRGAN++MPI+TP + R +Y++YE KP I + A ++ A L RRV +AGK+ + D  W DPPHF R
Sbjct:   32 IERVLGLPRGHVQPGQTLDLNRIQLTDLLSANDGSETEAELFDLAETIVNRVYGNKVYLRGIVEFSNVCEKNCNYCGIRREMPKQALPRYTMPDNEIVECALWAQKQRLGTVMLQSGEVSHPSRINWLIDVITQIRSRSIEA---------------DTVHKKGVAVALSVGEQSYDVYRRLFEAGGRRFLLRIESSNPLLYRSLHPADGMHTWEKRMSCLRDLGRVGFQLGTGVMIGLPQQSNWDLAGDILFFKEIDADMIGMGPYVVQADTPTGKVWTELHGRED--REEYNR-RLLALSSRMIALTRITLGDANIAATTALQAIHPTGRELCLRRGANLMMPILTPTKYREEYQLYEGKPSIHEAAEETHASLVRRVHVAGKE-VADDVWGDPPHFTR 413          
BLAST of EWM24357.1 vs. NCBI_GenBank
Match: gi|290976728|ref|XP_002671091.1| ([Fe] hydrogenase maturation protein [Naegleria gruberi] >gi|284084657|gb|EFC38347.1| [Fe] hydrogenase maturation protein [Naegleria gruberi])

HSP 1 Score: 375.17 bits (962), Expect = 9.353e-122
Identity = 187/394 (47.46%), Postives = 266/394 (67.51%), Query Frame = 0
Query:   86 LKDFLGLDRLDTGQKLDISRRQLTELLTTNDRTLIKSMYAVAEAATTAYFGTKVYARGIVEFSNVCTKDCFYCGIRKHTKVHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTMDLACESPPFPSAGPNQRDFPSQRGLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHP--ASHSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEEHGE-ESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERRVRMAGKDLLLDGGWHDPPHF 476
            L+ + G+ + + G+ +++++ Q+  +L   D    ++++  A + T + +G+KVY RGI+EFSNVC KDC YCGIRKH +V RYTM KEEI+  A +AY    G++MLQSGEL +  RI+ ++DV+R I++RT             GP + +    +GL +AL +GEL    YQ   +AGA RYLLRIETSNP LY++LHP   +H ++ R+KCLE L  IG+Q GTGVM+ +P QTV+D A+DLLFF+++  DMIG+GPYIVQ  TP+GK+W+E++G    A K+E NRV L     +M ALARI++   NI+ATTAL+A++P GRE+AL  GAN+VMPIITP + R  Y++Y+ KP ID    +   CL  RV+ + K L+LD  W DP  +
Sbjct:  136 LEKYFGV-KPELGKPVELTKEQIVNVLNIEDHEEQRALFDYANSITESIYGSKVYFRGIIEFSNVCQKDCNYCGIRKHMQVPRYTMPKEEIIEQAIWAYENHFGSIMLQSGELNTEGRISMLVDVIREIKKRT----------GGGGPGEWN----KGLGIALGVGELSRESYQRLYDAGAHRYLLRIETSNPELYSKLHPNDENHVWEERKKCLETLMDIGYQTGTGVMIMIPNQTVQDLADDLLFFRKIGADMIGMGPYIVQEGTPIGKIWMEQYGHMNEAEKKEYNRV-LFRLALKMTALARILIPEANISATTALQAINPAGREIALSSGANMVMPIITPTKYRVNYQLYQGKPCIDDTKEECKRCLTDRVKWSNKQLILD-EWGDPISY 512          
BLAST of EWM24357.1 vs. NCBI_GenBank
Match: gi|577705671|gb|AHH85810.1| (FeFe-hydrogenase assembly protein [Tetraselmis sp. GSL018])

HSP 1 Score: 371.703 bits (953), Expect = 6.450e-121
Identity = 197/393 (50.13%), Postives = 265/393 (67.43%), Query Frame = 0
Query:   98 GQKLDISRRQLTELL--TTN-----DRTLIKSMYAVAEAATTAYFGTKVYARGIVEFSNVCTKDCFYCGIRKHT-KVHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTM--DLACESPPFPSAGPNQRDFPSQR--GLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHPASHSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEE--HGEESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERRVRMAGKDLLLDGGWHDPPHF 476
            G  L+++  Q+  +L  TTN     +  L  +++A AE+ +  +FG KVY RGIVEFSNVC  DC YCGIRK+   VHRY+M+KEEIL  A  A+   MGTLMLQSGEL +P R++F+ DVVR IRR+T+  DL  ++    +   NQ +  +    GL VALS+GELP    Q    +GASRYL+RIETSNP L+ R+HP S + ++R +CL  ++  G Q+GTG+MVG+P QT++D ANDL+FFK +D DMIG+GPYI +  T     W+ E  +       ++A+  ++++ TTRM ALARI LGNVNIAATT+L+A++P GRELAL RGANVVMPI+TP   R QY++Y  KP +   A    +CL+ R+   GK+LL DG W DPPHF
Sbjct:   98 GDVLNLTADQIHGILEATTNEPGTKNSELNDALFAHAESVSRRFFGDKVYQRGIVEFSNVCENDCGYCGIRKYQPNVHRYSMSKEEILDVAMKAFDLKMGTLMLQSGELKTPRRLSFVNDVVREIRRKTILADLMRKNDLTEALLTNQENLQTAESIGLCVALSIGELPLEELQRLRASGASRYLVRIETSNPELFARIHPKSQTLESRVECLLNIKAAGLQLGTGLMVGLPGQTLKDLANDLVFFKNVDADMIGMGPYIPEDDT-----WVAEDFNHVNPGIDKKAHLESMVQLTTRMNALARITLGNVNIAATTSLQAINPLGRELALSRGANVVMPILTPTEQRAQYQLYPGKPCVSHGADGCASCLKMRIASVGKELLTDGSWSDPPHF 485          
BLAST of EWM24357.1 vs. NCBI_GenBank
Match: gi|1183421937|gb|ORY46272.1| (radical SAM enzyme [Neocallimastix californiae])

HSP 1 Score: 360.533 bits (924), Expect = 5.013e-117
Identity = 173/360 (48.06%), Postives = 243/360 (67.50%), Query Frame = 0
Query:   84 SPLKDFLGLDRLDTGQKLDISRRQLTELLTTNDRTLIKSMYAVAEAATTAYFGTKVYARGIVEFSNVCTKDCFYCGIRKHTK-VHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTMDLACESPPFPSAGPNQRDFPSQRGLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHPASHSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEEHGEESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGI 442
            +  K+FLGL +L+ GQ L ++R +L  L+TT D+ ++++M+  AE+ T  +F  K+Y RGIVEFSN C K+C YCG+R+  K + RY M++E+IL C++  ++ G GT MLQSGE+ +PERI+++ D+++ I++R+ +L  ES  F       R     +GL VA+S+GEL S  YQ   +AGA RYLLRIETSNP LY++LHP  H ++ R KCL EL+RIG+Q GTGV++GVP QT  D A+D+L+  +L   MIG+GPYI Q  TP+G  W    G + +   E     L+++T R+YAL RI++G  NIAATTALEAL P  RE AL  G N+VMPIITP   R +Y +Y  K  +
Sbjct:   59 TAFKNFLGLTKLEPGQILKLNRNELHALITTKDKKVVQAMFNHAESVTQRFFQNKIYLRGIVEFSNQCEKNCKYCGVRRSIKSLKRYCMSQEDILRCSDVVFNNGYGTFMLQSGEITTPERIDWLEDLIKKIKKRSREL--ESKRF------NRPLSECKGLQVAISVGELSSEYYQRLYDAGARRYLLRIETSNPKLYSKLHPRDHKWEVRHKCLLELKRIGYQTGTGVLIGVPHQTEWDMADDILYLDKLGAHMIGMGPYIYQPHTPIGNYWKFTTGRKYSNHMEEYHEMLIDKTIRLYALTRIVMGTSNIAATTALEALSPTAREKALVSGCNLVMPIITPDEYRKEYSLYVGKAEV 410          
BLAST of EWM24357.1 vs. NCBI_GenBank
Match: gi|1039092110|gb|ANM86878.1| (HydE [Stygiella incarcerata] >gi|1039092157|gb|ANM86739.1| HydE [Stygiella incarcerata])

HSP 1 Score: 358.992 bits (920), Expect = 1.228e-116
Identity = 182/398 (45.73%), Postives = 257/398 (64.57%), Query Frame = 0
Query:   84 SPLKDFLGLDRLDTGQKLDISRRQLTELLTTNDRTLIKSMYAVAEAATTAYFGTKVYARGIVEFSNVCTKDCFYCGIRKHTK-VHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTMDLACESPPFPSAGPNQRDFPSQRGLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHPAS--HSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEEHGEESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERRVRMAGKDLLLDGGWHDPPHFVR 478
             P +  +G  +L+ G+   +S   +  LL+  D+ ++  M+A AE+      G KV+ RGIVEFSNVC K+C YCGIR+  + V RYTM+KEEIL CA + +  G G++MLQSGE  +   +NF+LDV+++IR+ +++L               D   ++GL VALS+GE    VYQ   +AGA RYLLRIETSNP LY+ LHP    H F+ R +C+ +L+++GFQ GTGVM+G+P Q+  D ANDL+FF++ D DMIG+GPY+VQ  TP G  +L        ++ +  +  L   + RM ALARI L +VN+ ATTAL+A+ P GRE+AL  GAN++MPI+TP R R +Y++YE KP +D+ A +   CL  RV+ AGK++ L   W DP HF R
Sbjct:   43 DPFRREVGRPQLEKGEDFHMSVDLMEHLLSIQDKAVVDGMFAHAESVQQKNIGNKVHFRGIVEFSNVCRKNCNYCGIRRDMEDVERYTMSKEEILECARWCFQNGYGSIMLQSGERTNRAHLNFLLDVIKSIRKESLEL---------------DVEQRQGLGVALSVGEQSKDVYQELFDAGAHRYLLRIETSNPHLYSILHPRDGLHEFEIRLQCIRDLKQVGFQTGTGVMIGLPGQSCRDLANDLMFFRDEDVDMIGMGPYVVQEHTPTGIEYL--------SRPQITKEELFSLSLRMLALARITLRDVNLPATTALQAIVPNGREIALSCGANMLMPILTPTRYRKEYQLYEGKPCVDEGADECRDCLSNRVKWAGKEIGL-WEWGDPKHFFR 416          
BLAST of EWM24357.1 vs. NCBI_GenBank
Match: gi|577705673|gb|AHH85811.1| (FeFe-hydrogenase assembly protein [Tetraselmis sp. GSL018])

HSP 1 Score: 373.629 bits (958), Expect = 6.282e-116
Identity = 197/398 (49.50%), Postives = 268/398 (67.34%), Query Frame = 0
Query:   98 GQKLDISRRQLTELL--TTN-----DRTLIKSMYAVAEAATTAYFGTKVYARGIVEFSNVCTKDCFYCGIRKHT-KVHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTM--DLACESPPFPSAGPNQRDFPSQR--GLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHPASHSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEEHGE--ESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERRVRMAGKDLLLDGGWHDPPHFVRPSV 481
            G  L+++  Q+  +L  TTN     +  L  +++A AE+ +  +FG KVY RGIVEFSNVC  DC YCGIRK+   VHRY+M+KEEIL  A  A+   MGTLMLQSGEL +P R++F+ DVVR IRR+T+  DL  ++    +   NQ +  +    GL VALS+GELP    Q    +GASRYL+RIETSNP L+ R+HP S + ++R +CL  ++  G Q+GTG+MVG+P QT++D ANDL+FFK +D DMIG+GPYI +  T     W+ E          ++A+  ++++ TTRM ALARI LGNVNIAATT+L+A++P GRELAL RGANVVMPI+TP   R QY++Y  KP +   A   ++CL+ R+   GK+LL DG W DPPHF + ++
Sbjct:   98 GDVLNLTADQIHGILEATTNEPGTKNSELNDALFAHAESVSRRFFGDKVYQRGIVEFSNVCENDCGYCGIRKYQPNVHRYSMSKEEILDVAMKAFDLKMGTLMLQSGELKTPRRLSFVNDVVREIRRKTILADLMRKNDLTEALLTNQENLQTAESIGLCVALSIGELPLEELQRLRASGASRYLVRIETSNPELFARIHPKSQTLESRVECLLNIKAAGLQLGTGLMVGLPGQTLKDLANDLVFFKNVDADMIGMGPYIPEDDT-----WVAEDFNRVNPGIDKKAHLESMVQLTTRMNALARITLGNVNIAATTSLQAINPLGRELALSRGANVVMPILTPTEQRAQYQLYPGKPCVSHGADGCSSCLKMRIASVGKELLTDGSWSDPPHFKKAAL 490          
BLAST of EWM24357.1 vs. NCBI_GenBank
Match: gi|1183354391|gb|ORX82185.1| (radical SAM enzyme [Anaeromyces robustus])

HSP 1 Score: 356.681 bits (914), Expect = 1.422e-115
Identity = 182/399 (45.61%), Postives = 256/399 (64.16%), Query Frame = 0
Query:   84 SPLKDFLGLDRLDTGQKLDISRRQLTELLTTNDRTLIKSMYAVAEAATTAYFGTKVYARGIVEFSNVCTKDCFYCGIRKHTK-VHRYTMTKEEILACAEFAYSQGMGTLMLQSGELPSPERINFMLDVVRAIRRRTMDLACESPPFPSAGPNQRDFPSQRGLAVALSLGELPSSVYQAFLEAGASRYLLRIETSNPTLYTRLHPASHSFQARRKCLEELQRIGFQVGTGVMVGVPFQTVEDQANDLLFFKELDPDMIGLGPYIVQSQTPLGKLWLEEHGE--ESAAKQEANRVALLERTTRMYALARIMLGNVNIAATTALEALDPEGRELALRRGANVVMPIITPQRLRGQYEIYENKPGIDQDALDSTACLERRVRMAGKDLLLDGGWHDP-PHFVR 478
            +  K+FLGL  L  G+ L ++R +L  L+TT D+ +I++MY  AE+ +  YF  KVY RGIVEFSN C K+C YCG+R+  K V RY M+KE+IL C++  Y+ G GT+MLQSGE+ +P+RI+++ D++++I+ R+  L  ES  F       R     +GL +ALS+GEL S  YQ   +AGA RYLLRIETSNP LY +LHP  H ++ R +CL +L+RIG+Q GTG+++GVP+QT  D A+D+L+  +L  DMIG+GPY+ Q  TP+G  W    G   ++   QE     L++ T R+YAL RI++G  NIAATTALEAL    RE AL+ G N+VMPIITP   R +Y +Y  K     + +     L + +    K+ +    W DP PH +R
Sbjct:   65 TAFKNFLGLSTLKPGEVLKLNRNELQALITTKDKNVIQAMYNHAESISRRYFDNKVYLRGIVEFSNECEKNCKYCGVRRSVKNVKRYCMSKEDILYCSDVIYNNGYGTMMLQSGEITNPKRIDWLEDLIKSIKIRSRKL--ESKRF------NRPLSECKGLQIALSVGELSSEYYQRLYDAGARRYLLRIETSNPKLYAKLHPKDHHWEVRHQCLLDLKRIGYQTGTGILIGVPYQTSWDLADDILYLDKLGADMIGMGPYVYQPHTPIGNYWKWTTGRKIKNEKDQEDYNNYLIDLTIRVYALTRIVVGMANIAATTALEALSSTAREKALQSGCNLVMPIITPDEYRKEYALYTGK----SEVVSHREKLVKLINKINKEPIF-FEWGDPLPHTLR 450          
The following BLAST results are available for this feature:
BLAST of EWM24357.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105753|gb|EWM24357.1|0.000e+0100.00radical sam domain protein [Nannochloropsis gadita... [more]
gi|585105754|gb|EWM24358.1|0.000e+0100.00radical sam domain protein [Nannochloropsis gadita... [more]
gi|470487651|ref|XP_004344718.1|7.813e-13749.29radical SAM domain containing protein [Acanthamoeb... [more]
gi|551580404|gb|AGA37362.2|6.850e-12750.12mitochondrial hydrogenase maturation protein, part... [more]
gi|290976728|ref|XP_002671091.1|9.353e-12247.46[Fe] hydrogenase maturation protein [Naegleria gru... [more]
gi|577705671|gb|AHH85810.1|6.450e-12150.13FeFe-hydrogenase assembly protein [Tetraselmis sp.... [more]
gi|1183421937|gb|ORY46272.1|5.013e-11748.06radical SAM enzyme [Neocallimastix californiae][more]
gi|1039092110|gb|ANM86878.1|1.228e-11645.73HydE [Stygiella incarcerata] >gi|1039092157|gb|ANM... [more]
gi|577705673|gb|AHH85811.1|6.282e-11649.50FeFe-hydrogenase assembly protein [Tetraselmis sp.... [more]
gi|1183354391|gb|ORX82185.1|1.422e-11545.61radical SAM enzyme [Anaeromyces robustus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6333rna6333Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications