EWM30040.1, cds631 (CDS) Nannochloropsis gaditana

Overview
NameEWM30040.1
Unique Namecds631
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:35202..35433 +
Alignment locationCM002456.1:35548..36193 +
Alignment locationCM002456.1:36446..36711 +
Alignment locationCM002456.1:36818..37006 +
Alignment locationCM002456.1:37153..37442 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30040.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100179g3.5428.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:35202..35433 +
CM002456.1supercontigCM002456.1:35548..36193 +
CM002456.1supercontigCM002456.1:36446..36711 +
CM002456.1supercontigCM002456.1:36818..37006 +
CM002456.1supercontigCM002456.1:37153..37442 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR028031DUF4460
Homology
[Close]
BLAST of EWM30040.1 vs. NCBI_GenBank
Match: gi|585112668|gb|EWM30040.1| (hypothetical protein Naga_100179g3 [Nannochloropsis gaditana])

HSP 1 Score: 1103.2 bits (2852), Expect = 0.000e+0
Identity = 540/540 (100.00%), Postives = 540/540 (100.00%), Query Frame = 0 
Query:    1 MQISCTSTVLALQERGMRHVMALLQHVKLSTSAYFHPKWEVVRNISSTASSHASSSISSGSSSVDPTIIIKKQFFLQVHPDFFQQHPREQNINSENLKVLNNFFETSSQRSSSLASTISPPFAGIGASPRDLVFYVKTRALPPRTSSTPNSISLPSRVVVPLNDRVFHSLHEILSRHCELGSSLPSPSPSPAPAGPDHRSSIWDHIHEQAHDDWRWAWRRPCAEDEDEGWAPFLDRFVAHLQRRETKRGGGQKGRRGDGLGKLQDRKEAAEHMEATGARICAKWGFESVQLHSDWAAEHLALTLWRLEAALEEYGDDALRVTRFAGFDLVLTPSRSPSLSGGPSAPPELRRRGECQSGSQRGAAGSVPIGYAPTLDQAPASGRTCSRSQYIAWLQSLGGGGESGLGGRKESMELLRPWEHLRMRVESDIRPSVLECGVLQVDHARRAEGVGSEHYGNDGVSGEAVGLARRGSDEGRVEGTGCGCRQDVRNNPGGICAAALELGDKRRNPVGEKLLEDSVHNVIPQFVIASAEKEMLFDQR 540
            MQISCTSTVLALQERGMRHVMALLQHVKLSTSAYFHPKWEVVRNISSTASSHASSSISSGSSSVDPTIIIKKQFFLQVHPDFFQQHPREQNINSENLKVLNNFFETSSQRSSSLASTISPPFAGIGASPRDLVFYVKTRALPPRTSSTPNSISLPSRVVVPLNDRVFHSLHEILSRHCELGSSLPSPSPSPAPAGPDHRSSIWDHIHEQAHDDWRWAWRRPCAEDEDEGWAPFLDRFVAHLQRRETKRGGGQKGRRGDGLGKLQDRKEAAEHMEATGARICAKWGFESVQLHSDWAAEHLALTLWRLEAALEEYGDDALRVTRFAGFDLVLTPSRSPSLSGGPSAPPELRRRGECQSGSQRGAAGSVPIGYAPTLDQAPASGRTCSRSQYIAWLQSLGGGGESGLGGRKESMELLRPWEHLRMRVESDIRPSVLECGVLQVDHARRAEGVGSEHYGNDGVSGEAVGLARRGSDEGRVEGTGCGCRQDVRNNPGGICAAALELGDKRRNPVGEKLLEDSVHNVIPQFVIASAEKEMLFDQR
Sbjct:    1 MQISCTSTVLALQERGMRHVMALLQHVKLSTSAYFHPKWEVVRNISSTASSHASSSISSGSSSVDPTIIIKKQFFLQVHPDFFQQHPREQNINSENLKVLNNFFETSSQRSSSLASTISPPFAGIGASPRDLVFYVKTRALPPRTSSTPNSISLPSRVVVPLNDRVFHSLHEILSRHCELGSSLPSPSPSPAPAGPDHRSSIWDHIHEQAHDDWRWAWRRPCAEDEDEGWAPFLDRFVAHLQRRETKRGGGQKGRRGDGLGKLQDRKEAAEHMEATGARICAKWGFESVQLHSDWAAEHLALTLWRLEAALEEYGDDALRVTRFAGFDLVLTPSRSPSLSGGPSAPPELRRRGECQSGSQRGAAGSVPIGYAPTLDQAPASGRTCSRSQYIAWLQSLGGGGESGLGGRKESMELLRPWEHLRMRVESDIRPSVLECGVLQVDHARRAEGVGSEHYGNDGVSGEAVGLARRGSDEGRVEGTGCGCRQDVRNNPGGICAAALELGDKRRNPVGEKLLEDSVHNVIPQFVIASAEKEMLFDQR 540
[Close]
BLAST of EWM30040.1 vs. NCBI_GenBank
Match: gi|553189582|ref|XP_005855031.1| (hypothetical protein NGA_0415300 [Nannochloropsis gaditana CCMP526] >gi|422294029|gb|EKU21329.1| hypothetical protein NGA_0415300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 218.009 bits (554), Expect = 6.673e-63
Identity = 120/193 (62.18%), Postives = 129/193 (66.84%), Query Frame = 0 
Query:  288 SVQLHSDWAAEHLALTLWRLEAALEEYGDDALRVTRFAGFDLVLTPSRSPSLSGGPSAPPELRRRGECQSGSQRG----AAGSVPIGYAPTLDQAPAS-------------------------------GRTCSRSQYIAWLQSLGGGGESGLGGRKESMELLRPWEHLRMRVESDIRPSVLECGVLQVDHAR 445
            + Q+ SDWAAEHLALTLWRLEAALEEYGDDALRVTRFAGFDLVLTPSRSPSLSGG          G  ++ ++ G    +    P+ +   L Q                                   GRTCSRSQYIAWLQSLGGGGESGLGGRKESMELLRPWEHLRMRVESDIRPSVLECGVLQVDHAR
Sbjct:    8 AAQMCSDWAAEHLALTLWRLEAALEEYGDDALRVTRFAGFDLVLTPSRSPSLSGGHPHLQSFGEEGNVKAAAKEGRLDLSPSDTPLHWIKLLRQVGVQDVWEAQGWRKEEAKLVAAFQSYVLPDAHLERGRTCSRSQYIAWLQSLGGGGESGLGGRKESMELLRPWEHLRMRVESDIRPSVLECGVLQVDHAR 200
[Close]
BLAST of EWM30040.1 vs. NCBI_GenBank
Match: gi|1002566100|ref|XP_015667488.1| (PREDICTED: T-cell activation inhibitor, mitochondrial [Protobothrops mucrosquamatus])

HSP 1 Score: 62.7734 bits (151), Expect = 8.940e-7
Identity = 62/264 (23.48%), Postives = 104/264 (39.39%), Query Frame = 0 
Query:   39 WEVVRNISSTASSHASSSISSGSSSVDPTIIIKKQFFLQVHPDFFQQHPREQNINSENLKVLNNFFETSSQRSSSLASTISPPFAGIGASPRDLVFYVKTRALPPRTSSTPNSISLPSRVVVPLNDRVFHSLHEILSRHCELGSSLPSPSPSPAPAGPDHRSSIWDHIHEQAHDDWRWAWRRPCAEDED-EGWAPFLD--RFVAHLQRRETKRGGGQKGRRGDGLGKLQDRKEAAEHMEATGARICAKWGFESVQLHSDWAAEH 299
            W  VR +S       + ++S G+ +++      + F+  VHPDFF QHPRE+ IN  +LK LN + E   +          P F      P  L FYV+ R   P +   P   +    V   L+ R      ++LS   ++ +S   P+        DH  S+    + Q+  + +  + RP   D+    +  F D    +   QR ET           +   KL+D     + ++   + +C K     ++    W   H
Sbjct:    5 WSTVRRLSLKKLQLQARALS-GADAINAL----RPFYFAVHPDFFGQHPREREINENSLKRLNGYLENLQK----------PGFRSF--KPTQLTFYVREREQSPSSIQEPFGAAGFRTVSFTLHTR------DLLSTVLDILNSCSLPT--------DHVQSLNGSANAQSTQETKSMFHRPIKWDKTYYSFTGFKDPEEELEQAQRMETTLSSWLDNNEKNATKKLKDSLPLRKELDRLKSELCQKLQLSDIRWQRSWGIAH 237
The following BLAST results are available for this feature:
BLAST of EWM30040.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585112668|gb|EWM30040.1|0.000e+0100.00hypothetical protein Naga_100179g3 [Nannochloropsi... [more]
gi|553189582|ref|XP_005855031.1|6.673e-6362.18hypothetical protein NGA_0415300 [Nannochloropsis ... [more]
gi|1002566100|ref|XP_015667488.1|8.940e-723.48PREDICTED: T-cell activation inhibitor, mitochondr... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna631rna631Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications