EWM24375.1, cds6307 (CDS) Nannochloropsis gaditana

Overview
NameEWM24375.1
Unique Namecds6307
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:247345..247395 -
Alignment locationCM002468.1:246938..246985 -
Alignment locationCM002468.1:246608..246678 -
Alignment locationCM002468.1:246297..246477 -
Alignment locationCM002468.1:246071..246130 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24375.1
Productglutaredoxin type i
Orig transcript idgnl|cribi|Naga_100246g3.10070.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:247345..247395 -
CM002468.1supercontigCM002468.1:246938..246985 -
CM002468.1supercontigCM002468.1:246608..246678 -
CM002468.1supercontigCM002468.1:246297..246477 -
CM002468.1supercontigCM002468.1:246071..246130 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0042221response to chemical
GO:0006091generation of precursor metabolites and energy
GO:0019725cellular homeostasis
GO:0045454cell redox homeostasis
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0015035protein disulfide oxidoreductase activity
GO:0009055electron transfer activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR011899Glutaredoxin_euk/vir
IPR002109Glutaredoxin
IPR012336Thioredoxin-like_fold
IPR014025Glutaredoxin_subgr
Homology
BLAST of EWM24375.1 vs. NCBI_GenBank
Match: gi|553191769|ref|XP_005855450.1| (glutaredoxin type i [Nannochloropsis gaditana CCMP526] >gi|422293609|gb|EKU20909.1| glutaredoxin type i [Nannochloropsis gaditana CCMP526] >gi|585105772|gb|EWM24375.1| glutaredoxin type i [Nannochloropsis gaditana])

HSP 1 Score: 274.633 bits (701), Expect = 1.886e-93
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0
Query:    1 MKSFAAPIFLLAATLLQLAVATKCPSGLTCSGNSKEEAFLVDGITSNACFVVSKSYCPFCMRAKSTLASVGADCEIIELDQRADGPALQRVLADMTGRRTVPNVFIGGKSIGGADDTLLLHSKGELKRLLVSAKDL 136
            MKSFAAPIFLLAATLLQLAVATKCPSGLTCSGNSKEEAFLVDGITSNACFVVSKSYCPFCMRAKSTLASVGADCEIIELDQRADGPALQRVLADMTGRRTVPNVFIGGKSIGGADDTLLLHSKGELKRLLVSAKDL
Sbjct:    1 MKSFAAPIFLLAATLLQLAVATKCPSGLTCSGNSKEEAFLVDGITSNACFVVSKSYCPFCMRAKSTLASVGADCEIIELDQRADGPALQRVLADMTGRRTVPNVFIGGKSIGGADDTLLLHSKGELKRLLVSAKDL 136          
BLAST of EWM24375.1 vs. NCBI_GenBank
Match: gi|168036781|ref|XP_001770884.1| (predicted protein [Physcomitrella patens] >gi|162677748|gb|EDQ64214.1| predicted protein, partial [Physcomitrella patens])

HSP 1 Score: 114.005 bits (284), Expect = 2.455e-30
Identity = 51/90 (56.67%), Postives = 67/90 (74.44%), Query Frame = 0
Query:   44 ITSNACFVVSKSYCPFCMRAKSTLASVGADCEIIELDQRADGPALQRVLADMTGRRTVPNVFIGGKSIGGADDTLLLHSKGELKRLLVSA 133
            I+ NA  V SKSYCPFC+R KS L S+GA+ +++ELD+ +DG  +Q  LA ++G+RTVPNVFIGG+ IGG DDT  +H KG+L  LL  A
Sbjct:   10 ISQNAVVVFSKSYCPFCLRVKSLLKSIGAEMKVVELDEESDGSDIQAALAKLSGQRTVPNVFIGGQHIGGRDDTTAMHKKGQLLPLLNGA 99          
BLAST of EWM24375.1 vs. NCBI_GenBank
Match: gi|695016208|ref|XP_009395004.1| (PREDICTED: glutaredoxin-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 112.079 bits (279), Expect = 1.963e-29
Identity = 51/90 (56.67%), Postives = 63/90 (70.00%), Query Frame = 0
Query:   44 ITSNACFVVSKSYCPFCMRAKSTLASVGADCEIIELDQRADGPALQRVLADMTGRRTVPNVFIGGKSIGGADDTLLLHSKGELKRLLVSA 133
            ++SN   V SKSYCP+C R K  L  +GA  + IELD  +DGP +Q  LA+ TG+RTVPNVF+GGK IGG D+T+  H KGEL  LLV A
Sbjct:   10 VSSNPVVVFSKSYCPYCTRVKQLLTQLGAKYKAIELDVESDGPQIQEALAEWTGQRTVPNVFVGGKHIGGCDNTMASHGKGELVPLLVDA 99          
BLAST of EWM24375.1 vs. NCBI_GenBank
Match: gi|953500623|emb|CEG38332.1| (glutaredoxin [Plasmopara halstedii])

HSP 1 Score: 110.923 bits (276), Expect = 1.632e-28
Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = 0
Query:   40 LVDGITSNACFVVSKSYCPFCMRAKSTLASVGADCEIIELDQRADGPALQRVLADMTGRRTVPNVFIGGKSIGGADDTLLLHSKGELKRLLVS 132
            ++D I      V SK++CP+C R KSTL  +GA  +++ELD R DG  +Q +L D+TG+RTVPN+FIGGK IGG DD + LH+K EL  +L S
Sbjct:   53 IMDAIAKEKVLVFSKTHCPYCARVKSTLEIIGAKYQVVELDTRDDGTQIQSLLLDLTGQRTVPNIFIGGKHIGGCDDIIALHAKSELSSMLQS 145          
BLAST of EWM24375.1 vs. NCBI_GenBank
Match: gi|729328416|ref|XP_010535822.1| (PREDICTED: glutaredoxin-C4 [Tarenaya hassleriana])

HSP 1 Score: 108.997 bits (271), Expect = 4.834e-28
Identity = 49/101 (48.51%), Postives = 68/101 (67.33%), Query Frame = 0
Query:   36 EEAFLVDGITSNACFVVSKSYCPFCMRAKSTLASVGADCEIIELDQRADGPALQRVLADMTGRRTVPNVFIGGKSIGGADDTLLLHSKGELKRLLVSAKDL 136
            E AF+   I+S+   + SKSYCP+C RAKS    +     ++ELD+R DG ++Q  +A+M GRRTVP VFI GK IGG+DDT+  +  GEL +LL  A+D+
Sbjct:   29 EAAFVQKTISSHKIVIFSKSYCPYCRRAKSVFKELHQVPHVVELDEREDGSSIQSAVAEMVGRRTVPQVFINGKHIGGSDDTVEAYENGELAKLLGVAEDI 129          
BLAST of EWM24375.1 vs. NCBI_GenBank
Match: gi|2708324|gb|AAB92419.1| (glutaredoxin type 1 [Fritillaria agrestis] >gi|2724048|gb|AAB92654.1| glutaredoxin type II [Fritillaria agrestis] >gi|2724050|gb|AAB92655.1| glutaredoxin type I [Fritillaria agrestis] >gi|2724052|gb|AAB92656.1| glutaredoxin type I [Fritillaria agrestis] >gi|2724054|gb|AAB92657.1| glutaredoxin type I [Fritillaria agrestis] >gi|2724056|gb|AAB92658.1| glutaredoxin type I [Fritillaria agrestis])

HSP 1 Score: 107.457 bits (267), Expect = 1.090e-27
Identity = 50/92 (54.35%), Postives = 65/92 (70.65%), Query Frame = 0
Query:   42 DGITSNACFVVSKSYCPFCMRAKSTLASVGADCEIIELDQRADGPALQRVLADMTGRRTVPNVFIGGKSIGGADDTLLLHSKGELKRLLVSA 133
            D + SN   V SKSYCP+C+R K  L  + A  ++IELD  +DG A+Q  LA+ TG+RTVPNVFIGGK IGG D T+ L++ G+L+ LLV A
Sbjct:    8 DLVASNPVVVFSKSYCPYCIRVKELLVKLKATYKVIELDLESDGSAIQAALAEWTGQRTVPNVFIGGKHIGGCDKTMELYNSGKLQPLLVEA 99          
BLAST of EWM24375.1 vs. NCBI_GenBank
Match: gi|659107140|ref|XP_008453540.1| (PREDICTED: glutaredoxin-C4-like [Cucumis melo])

HSP 1 Score: 108.227 bits (269), Expect = 1.199e-27
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 0
Query:   30 CSGNSKEEAFLVDGITSNACFVVSKSYCPFCMRAKSTLASVGADCEIIELDQRADGPALQRVLADMTGRRTVPNVFIGGKSIGGADDTLLLHSKGELKRLL 130
            C  +S  E+F+ + I S+   + SKSYCP+C RAK+    +     ++ELDQR DG ALQ  L+ + GRRTVP VFI GK IGG+DDT+  +  GEL +LL
Sbjct:   27 CRASSSPESFIKNAIASHQIVIFSKSYCPYCRRAKAVFKELNKVPHVVELDQRDDGSALQNALSVLFGRRTVPQVFIDGKHIGGSDDTVEAYESGELSKLL 127          
BLAST of EWM24375.1 vs. NCBI_GenBank
Match: gi|695001349|ref|XP_009415793.1| (PREDICTED: glutaredoxin-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 107.457 bits (267), Expect = 1.206e-27
Identity = 50/90 (55.56%), Postives = 64/90 (71.11%), Query Frame = 0
Query:   44 ITSNACFVVSKSYCPFCMRAKSTLASVGADCEIIELDQRADGPALQRVLADMTGRRTVPNVFIGGKSIGGADDTLLLHSKGELKRLLVSA 133
            ++SN   V SK++CPFC+R K  L  +GA  + IELD  +DG  +Q  LA+ TG+RTVPNVFIGGK IGG DDTL  H +G+LK LL+ A
Sbjct:   10 VSSNPVVVFSKTFCPFCVRVKKLLDQLGARYKAIELDVESDGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDDTLAKHQQGKLKPLLIEA 99          
BLAST of EWM24375.1 vs. NCBI_GenBank
Match: gi|449457215|ref|XP_004146344.1| (PREDICTED: glutaredoxin-C4-like [Cucumis sativus] >gi|700210406|gb|KGN65502.1| hypothetical protein Csa_1G427520 [Cucumis sativus])

HSP 1 Score: 108.227 bits (269), Expect = 1.490e-27
Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 0
Query:   30 CSGNSKEEAFLVDGITSNACFVVSKSYCPFCMRAKSTLASVGADCEIIELDQRADGPALQRVLADMTGRRTVPNVFIGGKSIGGADDTLLLHSKGELKRLL 130
            C  +S  E+F+ + I S+   + SKSYCP+C RAK+    +     ++ELDQR DG +LQ  L+ + GRRTVP VFI GK IGG+DDTL  +  GEL++LL
Sbjct:   27 CGASSSPESFIKNTIASHQIVIFSKSYCPYCRRAKAVFKELHKVPHVVELDQRDDGSSLQNALSVLFGRRTVPQVFIDGKHIGGSDDTLEAYESGELRKLL 127          
BLAST of EWM24375.1 vs. NCBI_GenBank
Match: gi|568036607|gb|ETM34213.1| (glutaredoxin [Phytophthora parasitica] >gi|568036608|gb|ETM34214.1| glutaredoxin, variant [Phytophthora parasitica])

HSP 1 Score: 105.916 bits (263), Expect = 6.255e-27
Identity = 51/111 (45.95%), Postives = 68/111 (61.26%), Query Frame = 0
Query:   20 VATKCPSGLTCSGNSKEEAFLVDGITSNACFVVSKSYCPFCMRAKSTLASVGADCEIIELDQRADGPALQRVLADMTGRRTVPNVFIGGKSIGGADDTLLLHSKGELKRLL 130
            VA   P+G         +A + D I      V SK++CP+C R K TL  + A  E++ELD R DG  +Q +L D+TG+RTVPNVFI GK IGG DD ++LH+K EL  +L
Sbjct:   13 VARFSPAGARAFHVEASKASITDAIAKEKVLVFSKTHCPYCARVKGTLDVLDAKYEVVELDTRDDGAEIQSLLLDITGQRTVPNVFINGKHIGGCDDVMVLHAKSELVPML 123          
The following BLAST results are available for this feature:
BLAST of EWM24375.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553191769|ref|XP_005855450.1|1.886e-93100.00glutaredoxin type i [Nannochloropsis gaditana CCMP... [more]
gi|168036781|ref|XP_001770884.1|2.455e-3056.67predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|695016208|ref|XP_009395004.1|1.963e-2956.67PREDICTED: glutaredoxin-like [Musa acuminata subsp... [more]
gi|953500623|emb|CEG38332.1|1.632e-2851.61glutaredoxin [Plasmopara halstedii][more]
gi|729328416|ref|XP_010535822.1|4.834e-2848.51PREDICTED: glutaredoxin-C4 [Tarenaya hassleriana][more]
gi|2708324|gb|AAB92419.1|1.090e-2754.35glutaredoxin type 1 [Fritillaria agrestis] >gi|272... [more]
gi|659107140|ref|XP_008453540.1|1.199e-2748.51PREDICTED: glutaredoxin-C4-like [Cucumis melo][more]
gi|695001349|ref|XP_009415793.1|1.206e-2755.56PREDICTED: glutaredoxin-like [Musa acuminata subsp... [more]
gi|449457215|ref|XP_004146344.1|1.490e-2748.51PREDICTED: glutaredoxin-C4-like [Cucumis sativus] ... [more]
gi|568036607|gb|ETM34213.1|6.255e-2745.95glutaredoxin [Phytophthora parasitica] >gi|5680366... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6322rna6322Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications