EWM24375.1, cds6307 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24375.1 vs. NCBI_GenBank
Match: gi|553191769|ref|XP_005855450.1| (glutaredoxin type i [Nannochloropsis gaditana CCMP526] >gi|422293609|gb|EKU20909.1| glutaredoxin type i [Nannochloropsis gaditana CCMP526] >gi|585105772|gb|EWM24375.1| glutaredoxin type i [Nannochloropsis gaditana]) HSP 1 Score: 274.633 bits (701), Expect = 1.886e-93 Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0 Query: 1 MKSFAAPIFLLAATLLQLAVATKCPSGLTCSGNSKEEAFLVDGITSNACFVVSKSYCPFCMRAKSTLASVGADCEIIELDQRADGPALQRVLADMTGRRTVPNVFIGGKSIGGADDTLLLHSKGELKRLLVSAKDL 136 MKSFAAPIFLLAATLLQLAVATKCPSGLTCSGNSKEEAFLVDGITSNACFVVSKSYCPFCMRAKSTLASVGADCEIIELDQRADGPALQRVLADMTGRRTVPNVFIGGKSIGGADDTLLLHSKGELKRLLVSAKDL Sbjct: 1 MKSFAAPIFLLAATLLQLAVATKCPSGLTCSGNSKEEAFLVDGITSNACFVVSKSYCPFCMRAKSTLASVGADCEIIELDQRADGPALQRVLADMTGRRTVPNVFIGGKSIGGADDTLLLHSKGELKRLLVSAKDL 136
BLAST of EWM24375.1 vs. NCBI_GenBank
Match: gi|168036781|ref|XP_001770884.1| (predicted protein [Physcomitrella patens] >gi|162677748|gb|EDQ64214.1| predicted protein, partial [Physcomitrella patens]) HSP 1 Score: 114.005 bits (284), Expect = 2.455e-30 Identity = 51/90 (56.67%), Postives = 67/90 (74.44%), Query Frame = 0 Query: 44 ITSNACFVVSKSYCPFCMRAKSTLASVGADCEIIELDQRADGPALQRVLADMTGRRTVPNVFIGGKSIGGADDTLLLHSKGELKRLLVSA 133 I+ NA V SKSYCPFC+R KS L S+GA+ +++ELD+ +DG +Q LA ++G+RTVPNVFIGG+ IGG DDT +H KG+L LL A Sbjct: 10 ISQNAVVVFSKSYCPFCLRVKSLLKSIGAEMKVVELDEESDGSDIQAALAKLSGQRTVPNVFIGGQHIGGRDDTTAMHKKGQLLPLLNGA 99
BLAST of EWM24375.1 vs. NCBI_GenBank
Match: gi|695016208|ref|XP_009395004.1| (PREDICTED: glutaredoxin-like [Musa acuminata subsp. malaccensis]) HSP 1 Score: 112.079 bits (279), Expect = 1.963e-29 Identity = 51/90 (56.67%), Postives = 63/90 (70.00%), Query Frame = 0 Query: 44 ITSNACFVVSKSYCPFCMRAKSTLASVGADCEIIELDQRADGPALQRVLADMTGRRTVPNVFIGGKSIGGADDTLLLHSKGELKRLLVSA 133 ++SN V SKSYCP+C R K L +GA + IELD +DGP +Q LA+ TG+RTVPNVF+GGK IGG D+T+ H KGEL LLV A Sbjct: 10 VSSNPVVVFSKSYCPYCTRVKQLLTQLGAKYKAIELDVESDGPQIQEALAEWTGQRTVPNVFVGGKHIGGCDNTMASHGKGELVPLLVDA 99
BLAST of EWM24375.1 vs. NCBI_GenBank
Match: gi|953500623|emb|CEG38332.1| (glutaredoxin [Plasmopara halstedii]) HSP 1 Score: 110.923 bits (276), Expect = 1.632e-28 Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = 0 Query: 40 LVDGITSNACFVVSKSYCPFCMRAKSTLASVGADCEIIELDQRADGPALQRVLADMTGRRTVPNVFIGGKSIGGADDTLLLHSKGELKRLLVS 132 ++D I V SK++CP+C R KSTL +GA +++ELD R DG +Q +L D+TG+RTVPN+FIGGK IGG DD + LH+K EL +L S Sbjct: 53 IMDAIAKEKVLVFSKTHCPYCARVKSTLEIIGAKYQVVELDTRDDGTQIQSLLLDLTGQRTVPNIFIGGKHIGGCDDIIALHAKSELSSMLQS 145
BLAST of EWM24375.1 vs. NCBI_GenBank
Match: gi|729328416|ref|XP_010535822.1| (PREDICTED: glutaredoxin-C4 [Tarenaya hassleriana]) HSP 1 Score: 108.997 bits (271), Expect = 4.834e-28 Identity = 49/101 (48.51%), Postives = 68/101 (67.33%), Query Frame = 0 Query: 36 EEAFLVDGITSNACFVVSKSYCPFCMRAKSTLASVGADCEIIELDQRADGPALQRVLADMTGRRTVPNVFIGGKSIGGADDTLLLHSKGELKRLLVSAKDL 136 E AF+ I+S+ + SKSYCP+C RAKS + ++ELD+R DG ++Q +A+M GRRTVP VFI GK IGG+DDT+ + GEL +LL A+D+ Sbjct: 29 EAAFVQKTISSHKIVIFSKSYCPYCRRAKSVFKELHQVPHVVELDEREDGSSIQSAVAEMVGRRTVPQVFINGKHIGGSDDTVEAYENGELAKLLGVAEDI 129
BLAST of EWM24375.1 vs. NCBI_GenBank
Match: gi|2708324|gb|AAB92419.1| (glutaredoxin type 1 [Fritillaria agrestis] >gi|2724048|gb|AAB92654.1| glutaredoxin type II [Fritillaria agrestis] >gi|2724050|gb|AAB92655.1| glutaredoxin type I [Fritillaria agrestis] >gi|2724052|gb|AAB92656.1| glutaredoxin type I [Fritillaria agrestis] >gi|2724054|gb|AAB92657.1| glutaredoxin type I [Fritillaria agrestis] >gi|2724056|gb|AAB92658.1| glutaredoxin type I [Fritillaria agrestis]) HSP 1 Score: 107.457 bits (267), Expect = 1.090e-27 Identity = 50/92 (54.35%), Postives = 65/92 (70.65%), Query Frame = 0 Query: 42 DGITSNACFVVSKSYCPFCMRAKSTLASVGADCEIIELDQRADGPALQRVLADMTGRRTVPNVFIGGKSIGGADDTLLLHSKGELKRLLVSA 133 D + SN V SKSYCP+C+R K L + A ++IELD +DG A+Q LA+ TG+RTVPNVFIGGK IGG D T+ L++ G+L+ LLV A Sbjct: 8 DLVASNPVVVFSKSYCPYCIRVKELLVKLKATYKVIELDLESDGSAIQAALAEWTGQRTVPNVFIGGKHIGGCDKTMELYNSGKLQPLLVEA 99
BLAST of EWM24375.1 vs. NCBI_GenBank
Match: gi|659107140|ref|XP_008453540.1| (PREDICTED: glutaredoxin-C4-like [Cucumis melo]) HSP 1 Score: 108.227 bits (269), Expect = 1.199e-27 Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 0 Query: 30 CSGNSKEEAFLVDGITSNACFVVSKSYCPFCMRAKSTLASVGADCEIIELDQRADGPALQRVLADMTGRRTVPNVFIGGKSIGGADDTLLLHSKGELKRLL 130 C +S E+F+ + I S+ + SKSYCP+C RAK+ + ++ELDQR DG ALQ L+ + GRRTVP VFI GK IGG+DDT+ + GEL +LL Sbjct: 27 CRASSSPESFIKNAIASHQIVIFSKSYCPYCRRAKAVFKELNKVPHVVELDQRDDGSALQNALSVLFGRRTVPQVFIDGKHIGGSDDTVEAYESGELSKLL 127
BLAST of EWM24375.1 vs. NCBI_GenBank
Match: gi|695001349|ref|XP_009415793.1| (PREDICTED: glutaredoxin-like [Musa acuminata subsp. malaccensis]) HSP 1 Score: 107.457 bits (267), Expect = 1.206e-27 Identity = 50/90 (55.56%), Postives = 64/90 (71.11%), Query Frame = 0 Query: 44 ITSNACFVVSKSYCPFCMRAKSTLASVGADCEIIELDQRADGPALQRVLADMTGRRTVPNVFIGGKSIGGADDTLLLHSKGELKRLLVSA 133 ++SN V SK++CPFC+R K L +GA + IELD +DG +Q LA+ TG+RTVPNVFIGGK IGG DDTL H +G+LK LL+ A Sbjct: 10 VSSNPVVVFSKTFCPFCVRVKKLLDQLGARYKAIELDVESDGSDIQAALAEWTGQRTVPNVFIGGKHIGGCDDTLAKHQQGKLKPLLIEA 99
BLAST of EWM24375.1 vs. NCBI_GenBank
Match: gi|449457215|ref|XP_004146344.1| (PREDICTED: glutaredoxin-C4-like [Cucumis sativus] >gi|700210406|gb|KGN65502.1| hypothetical protein Csa_1G427520 [Cucumis sativus]) HSP 1 Score: 108.227 bits (269), Expect = 1.490e-27 Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 0 Query: 30 CSGNSKEEAFLVDGITSNACFVVSKSYCPFCMRAKSTLASVGADCEIIELDQRADGPALQRVLADMTGRRTVPNVFIGGKSIGGADDTLLLHSKGELKRLL 130 C +S E+F+ + I S+ + SKSYCP+C RAK+ + ++ELDQR DG +LQ L+ + GRRTVP VFI GK IGG+DDTL + GEL++LL Sbjct: 27 CGASSSPESFIKNTIASHQIVIFSKSYCPYCRRAKAVFKELHKVPHVVELDQRDDGSSLQNALSVLFGRRTVPQVFIDGKHIGGSDDTLEAYESGELRKLL 127
BLAST of EWM24375.1 vs. NCBI_GenBank
Match: gi|568036607|gb|ETM34213.1| (glutaredoxin [Phytophthora parasitica] >gi|568036608|gb|ETM34214.1| glutaredoxin, variant [Phytophthora parasitica]) HSP 1 Score: 105.916 bits (263), Expect = 6.255e-27 Identity = 51/111 (45.95%), Postives = 68/111 (61.26%), Query Frame = 0 Query: 20 VATKCPSGLTCSGNSKEEAFLVDGITSNACFVVSKSYCPFCMRAKSTLASVGADCEIIELDQRADGPALQRVLADMTGRRTVPNVFIGGKSIGGADDTLLLHSKGELKRLL 130 VA P+G +A + D I V SK++CP+C R K TL + A E++ELD R DG +Q +L D+TG+RTVPNVFI GK IGG DD ++LH+K EL +L Sbjct: 13 VARFSPAGARAFHVEASKASITDAIAKEKVLVFSKTHCPYCARVKGTLDVLDAKYEVVELDTRDDGAEIQSLLLDITGQRTVPNVFINGKHIGGCDDVMVLHAKSELVPML 123 The following BLAST results are available for this feature:
BLAST of EWM24375.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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