EWM24408.1, cds6266 (CDS) Nannochloropsis gaditana

Overview
NameEWM24408.1
Unique Namecds6266
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:164795..165331 -
Alignment locationCM002468.1:164565..164660 -
Alignment locationCM002468.1:164417..164470 -

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Properties
Property NameValue
Protein idEWM24408.1
Productkef-type k transport systems -binding component
Orig transcript idgnl|cribi|Naga_100832g2.991.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:164795..165331 -
CM002468.1supercontigCM002468.1:164565..164660 -
CM002468.1supercontigCM002468.1:164417..164470 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0005886plasma membrane
Homology
[Close]
BLAST of EWM24408.1 vs. NCBI_GenBank
Match: gi|585105819|gb|EWM24408.1| (kef-type k+ transport systems -binding component [Nannochloropsis gaditana])

HSP 1 Score: 458.373 bits (1178), Expect = 4.692e-163
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0 
Query:    1 MALLCCRRRRRAPAVVPGMEGGREGGKEGGKEGGKEGGRLVGGLKTEADSTPSQSPRRPWRDFYIERENTVAQRVLRKEKELAEEKAKEDALVREIEAQVWAQEQEERAQVGAEGEEEGRARCDGKEGGKCQGYTLAASVLEGRGSNVPSAHLMTCIHQANRGGASASAALQAIPLAKKVRKQQQQIEKLAHIVGDQLHHIHALSEALTEMERATVYLMSRFDELESD 228
            MALLCCRRRRRAPAVVPGMEGGREGGKEGGKEGGKEGGRLVGGLKTEADSTPSQSPRRPWRDFYIERENTVAQRVLRKEKELAEEKAKEDALVREIEAQVWAQEQEERAQVGAEGEEEGRARCDGKEGGKCQGYTLAASVLEGRGSNVPSAHLMTCIHQANRGGASASAALQAIPLAKKVRKQQQQIEKLAHIVGDQLHHIHALSEALTEMERATVYLMSRFDELESD
Sbjct:    1 MALLCCRRRRRAPAVVPGMEGGREGGKEGGKEGGKEGGRLVGGLKTEADSTPSQSPRRPWRDFYIERENTVAQRVLRKEKELAEEKAKEDALVREIEAQVWAQEQEERAQVGAEGEEEGRARCDGKEGGKCQGYTLAASVLEGRGSNVPSAHLMTCIHQANRGGASASAALQAIPLAKKVRKQQQQIEKLAHIVGDQLHHIHALSEALTEMERATVYLMSRFDELESD 228
[Close]
BLAST of EWM24408.1 vs. NCBI_GenBank
Match: gi|585105818|gb|EWM24407.1| (kef-type k+ transport systems -binding component [Nannochloropsis gaditana])

HSP 1 Score: 461.07 bits (1185), Expect = 8.565e-163
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0 
Query:    1 MALLCCRRRRRAPAVVPGMEGGREGGKEGGKEGGKEGGRLVGGLKTEADSTPSQSPRRPWRDFYIERENTVAQRVLRKEKELAEEKAKEDALVREIEAQVWAQEQEERAQVGAEGEEEGRARCDGKEGGKCQGYTLAASVLEGRGSNVPSAHLMTCIHQANRGGASASAALQAIPLAKKVRKQQQQIEKLAHIVGDQLHHIHALSEALTEMERATVYLMSRFDELESD 228
            MALLCCRRRRRAPAVVPGMEGGREGGKEGGKEGGKEGGRLVGGLKTEADSTPSQSPRRPWRDFYIERENTVAQRVLRKEKELAEEKAKEDALVREIEAQVWAQEQEERAQVGAEGEEEGRARCDGKEGGKCQGYTLAASVLEGRGSNVPSAHLMTCIHQANRGGASASAALQAIPLAKKVRKQQQQIEKLAHIVGDQLHHIHALSEALTEMERATVYLMSRFDELESD
Sbjct:   84 MALLCCRRRRRAPAVVPGMEGGREGGKEGGKEGGKEGGRLVGGLKTEADSTPSQSPRRPWRDFYIERENTVAQRVLRKEKELAEEKAKEDALVREIEAQVWAQEQEERAQVGAEGEEEGRARCDGKEGGKCQGYTLAASVLEGRGSNVPSAHLMTCIHQANRGGASASAALQAIPLAKKVRKQQQQIEKLAHIVGDQLHHIHALSEALTEMERATVYLMSRFDELESD 311
The following BLAST results are available for this feature:
BLAST of EWM24408.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105819|gb|EWM24408.1|4.692e-163100.00kef-type k+ transport systems -binding component [... [more]
gi|585105818|gb|EWM24407.1|8.565e-163100.00kef-type k+ transport systems -binding component [... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6281rna6281Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications