EWM24417.1, cds6257 (CDS) Nannochloropsis gaditana

Overview
NameEWM24417.1
Unique Namecds6257
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:143963..144181 -
Alignment locationCM002468.1:143500..143664 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24417.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101269g1.10057.mrna
GbkeyCDS
End range.
End range144181
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:143963..144181 -
CM002468.1supercontigCM002468.1:143500..143664 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
Homology
BLAST of EWM24417.1 vs. NCBI_GenBank
Match: gi|585105843|gb|EWM24417.1| (hypothetical protein Naga_101269g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 257.684 bits (657), Expect = 6.664e-87
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0
Query:    1 PPSLHPSLPFSGAYDAVLLANVLCRLPDPRLALEMIGGREGGREGVLAPGGLFMLTTPFSWKECFTPKEKWLGGAAPDGKDSHAELKRLMGGLGFKLLKEQEMPLIIHQHARLFELITPMATVWQKM 127
            PPSLHPSLPFSGAYDAVLLANVLCRLPDPRLALEMIGGREGGREGVLAPGGLFMLTTPFSWKECFTPKEKWLGGAAPDGKDSHAELKRLMGGLGFKLLKEQEMPLIIHQHARLFELITPMATVWQKM
Sbjct:    1 PPSLHPSLPFSGAYDAVLLANVLCRLPDPRLALEMIGGREGGREGVLAPGGLFMLTTPFSWKECFTPKEKWLGGAAPDGKDSHAELKRLMGGLGFKLLKEQEMPLIIHQHARLFELITPMATVWQKM 127          
BLAST of EWM24417.1 vs. NCBI_GenBank
Match: gi|167517014|ref|XP_001742848.1| (hypothetical protein [Monosiga brevicollis MX1] >gi|163779472|gb|EDQ93086.1| predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 100.523 bits (249), Expect = 3.441e-23
Identity = 48/116 (41.38%), Postives = 76/116 (65.52%), Query Frame = 0
Query:   12 GAYDAVLLANVLCRLPDPRLALEMIGGREGGREGVLAPGGLFMLTTPFSWKECFTPKEKWLGGAAPDGKDSHAELKRLMGGLGFKLLKEQEMPLIIHQHARLFELITPMATVWQKM 127
            G +D VLLAN+LCRLPDP   LE +       + ++ PGG+ + T+PFSW + FT + +WLGG   DGK+S  +L  ++   GF+L+KE +MP +I +H R ++L+ P   V++++
Sbjct:  185 GQFDVVLLANLLCRLPDPVACLERM-------QHLVKPGGILVTTSPFSWLDQFTERTQWLGGY--DGKESRDKLVEVVTNAGFELVKEGDMPFLIREHRRKYQLVFPHLAVFRRV 291          
BLAST of EWM24417.1 vs. NCBI_GenBank
Match: gi|1160388879|ref|WP_079433228.1| (hypothetical protein [Zoogloea sp. LCSB751])

HSP 1 Score: 103.219 bits (256), Expect = 3.697e-23
Identity = 54/115 (46.96%), Postives = 73/115 (63.48%), Query Frame = 0
Query:   14 YDAVLLANVLCRLPDPRLALEMIGGREGGREGVLAPGGLFMLTTPFSWKECFTPKEKWLGGAAPDGK--DSHAELKRLMGGLGFKLLKEQEMPLIIHQHARLFELITPMATVWQK 126
            +DAVLLAN+LCRLP P   L    GR GG+ G++  GGL  L +P+SW E FTP+E WLGG   DG+   S   LK  +   GF L +E+E+PL+I +HAR ++ I     +WQ+
Sbjct:  687 FDAVLLANLLCRLPSPMSLL----GRLGGQRGLVKVGGLVALFSPYSWLEQFTPREAWLGGYEKDGQAVRSADTLKAFLAAEGFVLRREEEVPLVIREHARKYQFIVTHGMLWQR 797          
BLAST of EWM24417.1 vs. NCBI_GenBank
Match: gi|736412225|ref|WP_034434745.1| (hypothetical protein [Candidatus Contendobacter odensis])

HSP 1 Score: 102.834 bits (255), Expect = 5.837e-23
Identity = 53/115 (46.09%), Postives = 74/115 (64.35%), Query Frame = 0
Query:   14 YDAVLLANVLCRLPDPRLALEMIGGREGGREGVLAPGGLFMLTTPFSWKECFTPKEKWLGGAAPDGKDSHA--ELKRLMGGLGFKLLKEQEMPLIIHQHARLFELITPMATVWQK 126
            +DAVL+AN+LCRLP P+  L    GR  G  G++ PGGL  + +P+SW E FTP E WLGG   DG+  H+   L  L+   GF LL+E E+PL+I +HAR ++ I   A +W++
Sbjct:  694 FDAVLMANLLCRLPSPKALL----GRLSGPLGLVKPGGLLAIFSPYSWLESFTPPEAWLGGYEKDGQPIHSATALGALLRAEGFDLLREAEVPLVIREHARKYQYIVTHAMLWRR 804          
BLAST of EWM24417.1 vs. NCBI_GenBank
Match: gi|577001465|emb|CDH46193.1| (conserved hypothetical protein [Candidatus Contendobacter odensis Run_B_J11])

HSP 1 Score: 102.834 bits (255), Expect = 6.070e-23
Identity = 53/115 (46.09%), Postives = 74/115 (64.35%), Query Frame = 0
Query:   14 YDAVLLANVLCRLPDPRLALEMIGGREGGREGVLAPGGLFMLTTPFSWKECFTPKEKWLGGAAPDGKDSHA--ELKRLMGGLGFKLLKEQEMPLIIHQHARLFELITPMATVWQK 126
            +DAVL+AN+LCRLP P+  L    GR  G  G++ PGGL  + +P+SW E FTP E WLGG   DG+  H+   L  L+   GF LL+E E+PL+I +HAR ++ I   A +W++
Sbjct:  696 FDAVLMANLLCRLPSPKALL----GRLSGPLGLVKPGGLLAIFSPYSWLESFTPPEAWLGGYEKDGQPIHSATALGALLRAEGFDLLREAEVPLVIREHARKYQYIVTHAMLWRR 806          
BLAST of EWM24417.1 vs. NCBI_GenBank
Match: gi|1180721378|ref|WP_084205034.1| (hypothetical protein [Azoarcus tolulyticus] >gi|1132000087|emb|SIQ61252.1| 5-histidylcysteine sulfoxide synthase/putative 4-mercaptohistidine N1-methyltranferase [Azoarcus tolulyticus])

HSP 1 Score: 101.679 bits (252), Expect = 1.464e-22
Identity = 55/117 (47.01%), Postives = 76/117 (64.96%), Query Frame = 0
Query:   14 YDAVLLANVLCRLPDPRLALEMIGGREGGREGVLAPGGLFMLTTPFSWKECFTPKEKWLGGAAPDGKD---SHAELKRLMGGLGFKLLKEQEMPLIIHQHARLFELITPMATVWQKM 127
            YDAVLLAN+LCRLP P+  L    GR GG  G++  GG+  + +P++W E FTP+  WLGG   DG+    S   LK L+G  GF+L +E EMPL+I +HAR ++ I   A +WQ++
Sbjct:  681 YDAVLLANLLCRLPSPKSLL----GRLGGPRGLVRTGGVVAILSPYTWLEQFTPRGAWLGGYM-DGERAVRSADTLKTLLGADGFELRREAEMPLVIREHARKYQYIVTHAMLWQRV 792          
BLAST of EWM24417.1 vs. NCBI_GenBank
Match: gi|1179924589|ref|WP_083446944.1| (hypothetical protein [Azoarcus sp. CIB] >gi|909829016|gb|AKU11814.1| hypothetical protein AzCIB_1919 [Azoarcus sp. CIB])

HSP 1 Score: 101.293 bits (251), Expect = 1.830e-22
Identity = 55/117 (47.01%), Postives = 76/117 (64.96%), Query Frame = 0
Query:   14 YDAVLLANVLCRLPDPRLALEMIGGREGGREGVLAPGGLFMLTTPFSWKECFTPKEKWLGGAAPDGKD---SHAELKRLMGGLGFKLLKEQEMPLIIHQHARLFELITPMATVWQKM 127
            YDAVLLAN+LCRLP P+  L    GR GG  G++  GG+  + +P++W E FTP+  WLGG   DG+    S   LK L+G  GF+L +E EMPL+I +HAR ++ I   A +WQ++
Sbjct:  681 YDAVLLANLLCRLPSPKSLL----GRLGGPRGLVRTGGVVAILSPYTWLEQFTPRGAWLGGYM-DGERAVRSADTLKALLGADGFELRREAEMPLVIREHARKYQYIVTHAMLWQRV 792          
BLAST of EWM24417.1 vs. NCBI_GenBank
Match: gi|1197345297|gb|ART37598.1| (E387 [uncultured bacterium])

HSP 1 Score: 100.523 bits (249), Expect = 3.408e-22
Identity = 54/115 (46.96%), Postives = 72/115 (62.61%), Query Frame = 0
Query:   14 YDAVLLANVLCRLPDPRLALEMIGGREGGREGVLAPGGLFMLTTPFSWKECFTPKEKWLGGAAPDGK--DSHAELKRLMGGLGFKLLKEQEMPLIIHQHARLFELITPMATVWQK 126
            +DAVL+AN+LCRLP P+  L    GR GG  G++  GGL  L +P+SW E FTP   WLGG A DG   +S   L+ L    GF L +E EMPL+I +H+R ++ I   A +WQ+
Sbjct:  689 FDAVLMANLLCRLPSPKSLL----GRLGGPRGLVRVGGLVALFSPYSWLEQFTPHGAWLGGYAKDGHEVNSADALRGLFTQQGFVLRREAEMPLVIREHSRKYQYIVAHAMLWQR 799          
BLAST of EWM24417.1 vs. NCBI_GenBank
Match: gi|514680666|ref|XP_004987920.1| (hypothetical protein PTSG_10993 [Salpingoeca rosetta] >gi|326435480|gb|EGD81050.1| hypothetical protein PTSG_10993 [Salpingoeca rosetta])

HSP 1 Score: 93.5893 bits (231), Expect = 1.657e-21
Identity = 51/124 (41.13%), Postives = 75/124 (60.48%), Query Frame = 0
Query:    3 SLHPSLPFSGAYDAVLLANVLCRLPDPRLALEMIGGREGGREGVLAPGGLFMLTTPFSWKECFTPKEKWLGGAAPDGKDSHAELKRLMGGLGFKLLKEQEMPLIIHQHARLFELITPMATVWQK 126
            SL+P L   G +D VL+AN+LCRLP+P   L+ +          +  GG  ++T+PFSW + FT +++WLGG   DGK S   L   M   GFKL+KE  +P +I +HAR ++L+ P   V+Q+
Sbjct:   68 SLNPDL---GQFDVVLMANLLCRLPNPTACLDSL-------PTFVPRGGHVVITSPFSWLDEFTDRDQWLGGH--DGKASRDGLVERMSANGFKLVKEDSIPFLIREHARKYQLVFPHLGVFQR 179          
BLAST of EWM24417.1 vs. NCBI_GenBank
Match: gi|517819890|ref|WP_018990098.1| (hypothetical protein [Azoarcus toluclasticus])

HSP 1 Score: 97.4413 bits (241), Expect = 4.199e-21
Identity = 53/117 (45.30%), Postives = 75/117 (64.10%), Query Frame = 0
Query:   14 YDAVLLANVLCRLPDPRLALEMIGGREGGREGVLAPGGLFMLTTPFSWKECFTPKEKWLGGAAPDGK---DSHAELKRLMGGLGFKLLKEQEMPLIIHQHARLFELITPMATVWQKM 127
            YDAVLLAN+LCRLP P+  L    GR GG  G++  GG+  + +P++W E FTP+  WLGG   DG+    S   LK L+   GF+L +E E+PL+I +HAR ++ I   A +WQ++
Sbjct:  681 YDAVLLANLLCRLPSPKSLL----GRLGGPRGLVRTGGVVAILSPYTWLEQFTPRGAWLGGYM-DGERAVRSADALKALLDADGFELRREAEIPLVIREHARKYQYIVTHAMLWQRV 792          
The following BLAST results are available for this feature:
BLAST of EWM24417.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105843|gb|EWM24417.1|6.664e-87100.00hypothetical protein Naga_101269g1, partial [Nanno... [more]
gi|167517014|ref|XP_001742848.1|3.441e-2341.38hypothetical protein [Monosiga brevicollis MX1] >g... [more]
gi|1160388879|ref|WP_079433228.1|3.697e-2346.96hypothetical protein [Zoogloea sp. LCSB751][more]
gi|736412225|ref|WP_034434745.1|5.837e-2346.09hypothetical protein [Candidatus Contendobacter od... [more]
gi|577001465|emb|CDH46193.1|6.070e-2346.09conserved hypothetical protein [Candidatus Contend... [more]
gi|1180721378|ref|WP_084205034.1|1.464e-2247.01hypothetical protein [Azoarcus tolulyticus] >gi|11... [more]
gi|1179924589|ref|WP_083446944.1|1.830e-2247.01hypothetical protein [Azoarcus sp. CIB] >gi|909829... [more]
gi|1197345297|gb|ART37598.1|3.408e-2246.96E387 [uncultured bacterium][more]
gi|514680666|ref|XP_004987920.1|1.657e-2141.13hypothetical protein PTSG_10993 [Salpingoeca roset... [more]
gi|517819890|ref|WP_018990098.1|4.199e-2145.30hypothetical protein [Azoarcus toluclasticus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6272rna6272Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications