EWM24452.1, cds6223 (CDS) Nannochloropsis gaditana

Overview
NameEWM24452.1
Unique Namecds6223
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:53418..54076 +
Alignment locationCM002468.1:54294..54361 +
Alignment locationCM002468.1:54682..56091 +
Alignment locationCM002468.1:56182..56276 +

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Properties
Property NameValue
Protein idEWM24452.1
Productbifunctional apoptosis regulator
Orig transcript idgnl|cribi|Naga_100486g3.7028.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:53418..54076 +
CM002468.1supercontigCM002468.1:54294..54361 +
CM002468.1supercontigCM002468.1:54682..56091 +
CM002468.1supercontigCM002468.1:56182..56276 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR017907Znf_RING_CS
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
Homology
[Close]
BLAST of EWM24452.1 vs. NCBI_GenBank
Match: gi|585105907|gb|EWM24452.1| (bifunctional apoptosis regulator [Nannochloropsis gaditana])

HSP 1 Score: 1505.73 bits (3897), Expect = 0.000e+0
Identity = 743/743 (100.00%), Postives = 743/743 (100.00%), Query Frame = 0 
Query:    1 MEPQGQHPQHEGPHQIPSPLDGLRRRWQKARRGLREAPAPEEDTGTRRQRQEGQLAADAQAQHHVHGICSQQVLHQKANSIGKTAEGAGALLLQDSSRKESVGSDTAGITQYGGRGREIRTHRRLSTEGEVDVAEDDLCCFDWGLLIEPVTMLCGHTFCRHCVGIILEDSQIKTQGGTPHTPGAMKCPLCCRSLPAVLPQPNVRLRNELRAKYPDLYAYRMETVGAAFVEKESKMRRQGQKRGTIMTPEDLEGLLAAHQRRVTAARREGLAGGQRAGPRGGGILRFLRRRQIDALAVGEEGEEEEEEEEGGRMAGIEEEEEEGMEVGEGDPVFEAVELFQSELVRIWRSRRYLCWILSLFVLMVGLHPLRLAPLPGKAAQVEAILRVDTWTEWLSLERCLAVGDKAGAVDEDSRRLSFCRLIRQESVSPRPSSVPAKGKESRMDDDVSPPHPRRGHGAPPFPSSSSPASRLEDTTFPGSELLATIYMYPSWGWIERVSRGVEGTVIDLLQVLQTPTPASILGAFPGFGMGVYALAHHGWSAPFRELVAFLAIEGEIRQFMAVWTVLTIPTRIPRNPLDIPPLGDMPAYAWTVLSLTLAQGAYLLACEMFATLLDVVALSPMLLALTQGTCWRSEASLIATVLVRFWLMLREDVRALEACLGRYTALEATILRLFILLSVFTAPLWAPRPMFNGSDLVSALTSAGGEVVTEIMVSSKKVDTCCICLQMARKPGCPRPMTGALTH 743
            MEPQGQHPQHEGPHQIPSPLDGLRRRWQKARRGLREAPAPEEDTGTRRQRQEGQLAADAQAQHHVHGICSQQVLHQKANSIGKTAEGAGALLLQDSSRKESVGSDTAGITQYGGRGREIRTHRRLSTEGEVDVAEDDLCCFDWGLLIEPVTMLCGHTFCRHCVGIILEDSQIKTQGGTPHTPGAMKCPLCCRSLPAVLPQPNVRLRNELRAKYPDLYAYRMETVGAAFVEKESKMRRQGQKRGTIMTPEDLEGLLAAHQRRVTAARREGLAGGQRAGPRGGGILRFLRRRQIDALAVGEEGEEEEEEEEGGRMAGIEEEEEEGMEVGEGDPVFEAVELFQSELVRIWRSRRYLCWILSLFVLMVGLHPLRLAPLPGKAAQVEAILRVDTWTEWLSLERCLAVGDKAGAVDEDSRRLSFCRLIRQESVSPRPSSVPAKGKESRMDDDVSPPHPRRGHGAPPFPSSSSPASRLEDTTFPGSELLATIYMYPSWGWIERVSRGVEGTVIDLLQVLQTPTPASILGAFPGFGMGVYALAHHGWSAPFRELVAFLAIEGEIRQFMAVWTVLTIPTRIPRNPLDIPPLGDMPAYAWTVLSLTLAQGAYLLACEMFATLLDVVALSPMLLALTQGTCWRSEASLIATVLVRFWLMLREDVRALEACLGRYTALEATILRLFILLSVFTAPLWAPRPMFNGSDLVSALTSAGGEVVTEIMVSSKKVDTCCICLQMARKPGCPRPMTGALTH
Sbjct:    1 MEPQGQHPQHEGPHQIPSPLDGLRRRWQKARRGLREAPAPEEDTGTRRQRQEGQLAADAQAQHHVHGICSQQVLHQKANSIGKTAEGAGALLLQDSSRKESVGSDTAGITQYGGRGREIRTHRRLSTEGEVDVAEDDLCCFDWGLLIEPVTMLCGHTFCRHCVGIILEDSQIKTQGGTPHTPGAMKCPLCCRSLPAVLPQPNVRLRNELRAKYPDLYAYRMETVGAAFVEKESKMRRQGQKRGTIMTPEDLEGLLAAHQRRVTAARREGLAGGQRAGPRGGGILRFLRRRQIDALAVGEEGEEEEEEEEGGRMAGIEEEEEEGMEVGEGDPVFEAVELFQSELVRIWRSRRYLCWILSLFVLMVGLHPLRLAPLPGKAAQVEAILRVDTWTEWLSLERCLAVGDKAGAVDEDSRRLSFCRLIRQESVSPRPSSVPAKGKESRMDDDVSPPHPRRGHGAPPFPSSSSPASRLEDTTFPGSELLATIYMYPSWGWIERVSRGVEGTVIDLLQVLQTPTPASILGAFPGFGMGVYALAHHGWSAPFRELVAFLAIEGEIRQFMAVWTVLTIPTRIPRNPLDIPPLGDMPAYAWTVLSLTLAQGAYLLACEMFATLLDVVALSPMLLALTQGTCWRSEASLIATVLVRFWLMLREDVRALEACLGRYTALEATILRLFILLSVFTAPLWAPRPMFNGSDLVSALTSAGGEVVTEIMVSSKKVDTCCICLQMARKPGCPRPMTGALTH 743
[Close]
BLAST of EWM24452.1 vs. NCBI_GenBank
Match: gi|553193442|ref|XP_005855776.1| (bifunctional apoptosis regulator [Nannochloropsis gaditana CCMP526] >gi|422293280|gb|EKU20580.1| bifunctional apoptosis regulator [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 696.427 bits (1796), Expect = 0.000e+0
Identity = 343/345 (99.42%), Postives = 343/345 (99.42%), Query Frame = 0 
Query:    1 MEPQGQHPQHEGPHQIPSPLDGLRRRWQKARRGLREAPAPEEDTGTRRQRQEGQLAADAQAQHHVHGICSQQVLHQKANSIGKTAEGAGALLLQDSSRKESVGSDTAGITQYGGRGREIRTHRRLSTEGEVDVAEDDLCCFDWGLLIEPVTMLCGHTFCRHCVGIILEDSQIKTQGGTPHTPGAMKCPLCCRSLPAVLPQPNVRLRNELRAKYPDLYAYRMETVGAAFVEKESKMRRQGQKRGTIMTPEDLEGLLAAHQRRVTAARREGLAGGQRAGPRGGGILRFLRRRQIDALAVGEEGEEEEEEEEGGRMAGIEEEEEEGMEVGEGDPVFEAVELFQSELVR 345
            MEPQGQHPQHEGPHQIPSPLDGLRRRWQKARRGLREAPAPE DTGTRRQRQEGQLAADAQAQHHVHGICSQQVLHQKANSIGKTAEGAGALLLQDSSRKESVGSDTAGITQYGGRGREIRTHRRLSTEGEVDVAEDDLCCFDWGLLIEPVTMLCGHTFCRHCVGIILEDSQIKTQGGTPHTPGAMKCPLCCRSLPAVLPQPNVRLRNELRAKYPDLYAYRMETVGAAFVEKESKMRRQGQKRGTIMTPEDLEGLLAAHQRRVTAARREGLAGGQRAGPRGGGILRFLRRRQIDALAVGEEGEEEEEEEEGGRMAGIEEEEEEGMEVGEGDPVFEAVELFQSEL R
Sbjct:    1 MEPQGQHPQHEGPHQIPSPLDGLRRRWQKARRGLREAPAPEGDTGTRRQRQEGQLAADAQAQHHVHGICSQQVLHQKANSIGKTAEGAGALLLQDSSRKESVGSDTAGITQYGGRGREIRTHRRLSTEGEVDVAEDDLCCFDWGLLIEPVTMLCGHTFCRHCVGIILEDSQIKTQGGTPHTPGAMKCPLCCRSLPAVLPQPNVRLRNELRAKYPDLYAYRMETVGAAFVEKESKMRRQGQKRGTIMTPEDLEGLLAAHQRRVTAARREGLAGGQRAGPRGGGILRFLRRRQIDALAVGEEGEEEEEEEEGGRMAGIEEEEEEGMEVGEGDPVFEAVELFQSELTR 345
The following BLAST results are available for this feature:
BLAST of EWM24452.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105907|gb|EWM24452.1|0.000e+0100.00bifunctional apoptosis regulator [Nannochloropsis ... [more]
gi|553193442|ref|XP_005855776.1|0.000e+099.42bifunctional apoptosis regulator [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6238rna6238Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications