EWM24459.1, cds6215 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24459.1 vs. NCBI_GenBank
Match: gi|585105923|gb|EWM24459.1| (hypothetical protein Naga_100512g2 [Nannochloropsis gaditana]) HSP 1 Score: 696.812 bits (1797), Expect = 0.000e+0 Identity = 340/340 (100.00%), Postives = 340/340 (100.00%), Query Frame = 0 Query: 1 MQFLAQRFPATDRALLDWNSFLLIGPVTLIAAVLGSILNVVLPEAIIYTGLPIILALLACYSVQKSMELFHSEGGWAHVCSRQTESSASQGGRNDKRDGGKIVSDRGERKTTPESFKEEAKCEKIVVGISDYGTTNRAPAPSATPSFASSSSKKKKKTLLVPVGDGLHGGMEDGIEGEVWASPFQETIYTFSPSKPSEPSPTHEAAEVEEEMTSKDKDKLLSPPADVRMAVQGKKEANLWKPMILAVCFLGVALTEMVQGGRGFPSPFGISCGSSTYWILTLGSISWAGGFFLWVRQYLLLDCEAKRREGRIFSPGDVLWTPKNTLLYPLCSALGVRGVK 340 MQFLAQRFPATDRALLDWNSFLLIGPVTLIAAVLGSILNVVLPEAIIYTGLPIILALLACYSVQKSMELFHSEGGWAHVCSRQTESSASQGGRNDKRDGGKIVSDRGERKTTPESFKEEAKCEKIVVGISDYGTTNRAPAPSATPSFASSSSKKKKKTLLVPVGDGLHGGMEDGIEGEVWASPFQETIYTFSPSKPSEPSPTHEAAEVEEEMTSKDKDKLLSPPADVRMAVQGKKEANLWKPMILAVCFLGVALTEMVQGGRGFPSPFGISCGSSTYWILTLGSISWAGGFFLWVRQYLLLDCEAKRREGRIFSPGDVLWTPKNTLLYPLCSALGVRGVK Sbjct: 1 MQFLAQRFPATDRALLDWNSFLLIGPVTLIAAVLGSILNVVLPEAIIYTGLPIILALLACYSVQKSMELFHSEGGWAHVCSRQTESSASQGGRNDKRDGGKIVSDRGERKTTPESFKEEAKCEKIVVGISDYGTTNRAPAPSATPSFASSSSKKKKKTLLVPVGDGLHGGMEDGIEGEVWASPFQETIYTFSPSKPSEPSPTHEAAEVEEEMTSKDKDKLLSPPADVRMAVQGKKEANLWKPMILAVCFLGVALTEMVQGGRGFPSPFGISCGSSTYWILTLGSISWAGGFFLWVRQYLLLDCEAKRREGRIFSPGDVLWTPKNTLLYPLCSALGVRGVK 340
BLAST of EWM24459.1 vs. NCBI_GenBank
Match: gi|553193456|ref|XP_005855780.1| (hypothetical protein NGA_0626200, partial [Nannochloropsis gaditana CCMP526] >gi|422293284|gb|EKU20584.1| hypothetical protein NGA_0626200, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 99.7525 bits (247), Expect = 3.996e-22 Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0 Query: 214 SKDKDKLLSPPADVRMAVQGKKEANLWKPMILAVCFLGVALTEMVQG 260 SKDKDKLLSPPADVRMAVQGKKEANLWKPMILAVCFLGVALTEMVQG Sbjct: 23 SKDKDKLLSPPADVRMAVQGKKEANLWKPMILAVCFLGVALTEMVQG 69
BLAST of EWM24459.1 vs. NCBI_GenBank
Match: gi|1129164611|gb|OLP76855.1| (E3 ubiquitin-protein ligase Nedd-4, partial [Symbiodinium microadriaticum]) HSP 1 Score: 83.5741 bits (205), Expect = 4.295e-14 Identity = 43/103 (41.75%), Postives = 59/103 (57.28%), Query Frame = 0 Query: 233 GKKEANL-WKPMILAVCFLGVALTEMVQGGRGFPSPFGISCGSSTYWILTLGSISWAGGFFLWVRQYLLLDCEAKRREGRIFSPGDVLWTPKNTLLYPLCSAL 334 GK + L +K L VCF G +++GG SPFG+ CGS+ YWIL+ G+ W F + R L+ + EAK + G F PG+V W KNT+ YPL A+ Sbjct: 254 GKGRSRLCYKIAALTVCFAGTCALTLLKGGGHLKSPFGVECGSAGYWILSFGAAPWVLIFAVAFRILLVREFEAKLQHGYAFGPGEVRWDSKNTITYPLLCAV 356
BLAST of EWM24459.1 vs. NCBI_GenBank
Match: gi|219112381|ref|XP_002177942.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410827|gb|EEC50756.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 72.4034 bits (176), Expect = 2.576e-10 Identity = 33/92 (35.87%), Postives = 50/92 (54.35%), Query Frame = 0 Query: 244 ILAVCFLGVALTEMVQGGRGFPSPFGISCGSSTYWILTLGSISWAGGFFLWVRQYLLLDCEAKRREGRIFSPGDVLWTPKNTLLYPLCSALG 335 IL F+ V +++GG FPSP GI CGS +WI L ++W G + +R YL+ E KRR + GD+ W + T++YP+ + Sbjct: 424 ILVTMFIVVLTINVLKGGGAFPSPLGIRCGSRAFWIANLVMLAWIGIISVGIRAYLVRRFEQKRRLSFPYVEGDIRWDARATIVYPVVCCMA 515
BLAST of EWM24459.1 vs. NCBI_GenBank
Match: gi|397620930|gb|EJK66001.1| (hypothetical protein THAOC_13100 [Thalassiosira oceanica]) HSP 1 Score: 67.3958 bits (163), Expect = 5.261e-9 Identity = 34/92 (36.96%), Postives = 50/92 (54.35%), Query Frame = 0 Query: 245 LAVCFLGVALTEMVQGGRGFPSPFGISCGSSTYWILTLGSISWAGGFFLWVRQYLLLDCEAKRREGRIFSPGDVLWTPKNTLLYP-LCSALG 335 LAV F V + +++GG F SP GI CGS ++W + W + R YL+ CE K R G + GD+ W + T++YP +C+A G Sbjct: 124 LAVTFAVVLVVNLLKGGGAFKSPLGIRCGSPSFWTANGLILGWILVVSFFARSYLVHRCEDKERVGYPYVEGDIRWDSRATVVYPAVCTAAG 215
BLAST of EWM24459.1 vs. NCBI_GenBank
Match: gi|1210517804|dbj|GAX23205.1| (hypothetical protein FisN_21Hh114 [Fistulifera solaris]) HSP 1 Score: 68.1662 bits (165), Expect = 6.090e-9 Identity = 31/94 (32.98%), Postives = 52/94 (55.32%), Query Frame = 0 Query: 243 MILAVCFLGVALTEMVQGGRGFPSPFGISCGSSTYWILTLGSISWAGGFFLWVRQYLLLDCEAKRREGRIFSPGDVLWTPKNTLLYP-LCSALG 335 ++L V F+ V + + +GG F SP GI+CGSS +W+ ++W + R LL E K ++ PGD++W + T++YP +C+ G Sbjct: 446 ILLVVMFIVVLIINVSKGGGAFKSPLGITCGSSAFWMSNFLLLAWILAISIHARVVLLHKYERKAACNYVYQPGDIVWDERATVVYPIICTFAG 539
BLAST of EWM24459.1 vs. NCBI_GenBank
Match: gi|223992571|ref|XP_002285969.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977284|gb|EED95610.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 68.1662 bits (165), Expect = 6.432e-9 Identity = 39/122 (31.97%), Postives = 63/122 (51.64%), Query Frame = 0 Query: 215 KDKDKLLSPPADVRMAVQGKKEANLWKPMILAVCFLGVALTEMVQGGRGFPSPFGISCGSSTYWILTLGSISWAGGFFLWVRQYLLLDCEAKRREGRIFSPGDVLWTPKNTLLYPL-CSALG 335 K+K++L ++ R +G + +L V F + +++GG FPSP GI CGS ++W+ I W ++ R YL+ E K R G + GD+ W + T++YPL C+A G Sbjct: 321 KNKEELSKILSEERTVPKGNVQ-------VLLVTFTVILFINIMKGGGAFPSPLGIRCGSPSFWVSNGIMIGWILLVSVFARSYLVRRYEIKERVGFPYVEGDIRWDGRATVVYPLVCTAAG 435
BLAST of EWM24459.1 vs. NCBI_GenBank
Match: gi|1210530877|dbj|GAX10417.1| (hypothetical protein FisN_21Lh114 [Fistulifera solaris]) HSP 1 Score: 67.0106 bits (162), Expect = 1.482e-8 Identity = 31/94 (32.98%), Postives = 51/94 (54.26%), Query Frame = 0 Query: 243 MILAVCFLGVALTEMVQGGRGFPSPFGISCGSSTYWILTLGSISWAGGFFLWVRQYLLLDCEAKRREGRIFSPGDVLWTPKNTLLYP-LCSALG 335 ++L V F+ V + +GG F SP GI+CGSS +W+ ++W + R LL E K ++ PGD++W + T++YP +C+ G Sbjct: 452 ILLVVMFIVVLIINASKGGGAFKSPLGITCGSSAFWMSNFLLLAWILAISIHARVVLLHKYERKAACNYVYQPGDIVWDERATVVYPIICTFAG 545
BLAST of EWM24459.1 vs. NCBI_GenBank
Match: gi|669149614|ref|XP_008610369.1| (hypothetical protein SDRG_06368 [Saprolegnia diclina VS20] >gi|530738021|gb|EQC36263.1| hypothetical protein SDRG_06368 [Saprolegnia diclina VS20]) HSP 1 Score: 66.2402 bits (160), Expect = 2.639e-8 Identity = 81/337 (24.04%), Postives = 133/337 (39.47%), Query Frame = 0 Query: 12 DRALLDWNSFLLIGPVTLIAAVLGSILNVVLPEAIIYTGLPIILALLACYSVQKSMELFHSEGGWAHVCSRQTESSAS-----QGGRNDKRDGGKIVSDRGERKTTPESFKEEAKCEKIVVGISDYGTT-NRAPAPSATPSFASSSSKKKKKTLLVPVGDGLHGGMEDGIEGEVWASPFQETIYTFSPSKPSEPSPTHEAAEVEEEMTSKDKDKLLSPPADVRMAVQGKKEANLWKPM-ILAVCFLGVALTEMVQGGRGFPSPFGISCGSSTYWILTLGSISWAGGFFLWVRQYLLLDCEAKRRE----GRIFSPGDVLWTPKNTLLYP-LCSALGV 336 DR L+D+ +++ P+TL ++G +N + PE +I L +L+ + + K ++ +E +++ AS Q +R G +V + + EA+ + + I D+ T N A AT ASS D ++ +D A+ + T+K LS R V W + IL + G+ L M++GG G PS G+ CGS+ YW+LT S+ FF+ V L A+ G + GD++WT + T+LYP LC+ GV Sbjct: 172 DRQLIDYEVVVMMEPMTLAGTIIGVHMNKMCPEWLITVLLVWLLSSTSLRMITKGKSVWRAEA------AKEKALLASVVAHWQSLVAARRFGAAVVVAARKWRALKALKALEAEATAVALSIKDHSITINLQEADEATT--ASSDDD-----------DTINDAYDDD-----------------------------HASLLGRATTTKKAHLSLSSLLAFRKFVP-------WGDLTILFFAWFGLLLFSMLKGGHGAPSVIGLDCGSAAYWLLTTLSLP----FFVGVTAIFGLKIAARHEALQAFGYKYVEGDIVWTKRTTVLYPALCTVAGV 449
BLAST of EWM24459.1 vs. NCBI_GenBank
Match: gi|1072224682|gb|OEU09431.1| (hypothetical protein FRACYDRAFT_248281 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 65.4698 bits (158), Expect = 3.512e-8 Identity = 32/98 (32.65%), Postives = 51/98 (52.04%), Query Frame = 0 Query: 239 LWKPMILAVCFLGVALTEMVQGGRGFPSPFGISCGSSTYWILTLGSISWAGGFFLWVRQYLLLDCEAKRREGRIFSPGDVLWTPKNTLLYP-LCSALG 335 ++ IL F+ V +++GG FPSP GI CGS +WI + W ++ R YL+ E K + G + GD+ W ++T++YP +C G Sbjct: 260 MFNVNILVGLFVVVLAINLLKGGGAFPSPIGIVCGSQNFWIANAIMLGWIILISIYCRAYLVQRFELKHKVGYKYIEGDIQWDDRSTIIYPGICCLAG 357 The following BLAST results are available for this feature:
BLAST of EWM24459.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10 Position : 0 Zoom : x 1
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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