EWM24459.1, cds6215 (CDS) Nannochloropsis gaditana

Overview
NameEWM24459.1
Unique Namecds6215
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:30913..30966 -
Alignment locationCM002468.1:30595..30735 -
Alignment locationCM002468.1:30139..30196 -
Alignment locationCM002468.1:29761..29876 -
Alignment locationCM002468.1:29170..29441 -
Alignment locationCM002468.1:28748..28883 -
Alignment locationCM002468.1:28446..28586 -
Alignment locationCM002468.1:28112..28216 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24459.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100512g2.9606.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:30913..30966 -
CM002468.1supercontigCM002468.1:30595..30735 -
CM002468.1supercontigCM002468.1:30139..30196 -
CM002468.1supercontigCM002468.1:29761..29876 -
CM002468.1supercontigCM002468.1:29170..29441 -
CM002468.1supercontigCM002468.1:28748..28883 -
CM002468.1supercontigCM002468.1:28446..28586 -
CM002468.1supercontigCM002468.1:28112..28216 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM24459.1 vs. NCBI_GenBank
Match: gi|585105923|gb|EWM24459.1| (hypothetical protein Naga_100512g2 [Nannochloropsis gaditana])

HSP 1 Score: 696.812 bits (1797), Expect = 0.000e+0
Identity = 340/340 (100.00%), Postives = 340/340 (100.00%), Query Frame = 0
Query:    1 MQFLAQRFPATDRALLDWNSFLLIGPVTLIAAVLGSILNVVLPEAIIYTGLPIILALLACYSVQKSMELFHSEGGWAHVCSRQTESSASQGGRNDKRDGGKIVSDRGERKTTPESFKEEAKCEKIVVGISDYGTTNRAPAPSATPSFASSSSKKKKKTLLVPVGDGLHGGMEDGIEGEVWASPFQETIYTFSPSKPSEPSPTHEAAEVEEEMTSKDKDKLLSPPADVRMAVQGKKEANLWKPMILAVCFLGVALTEMVQGGRGFPSPFGISCGSSTYWILTLGSISWAGGFFLWVRQYLLLDCEAKRREGRIFSPGDVLWTPKNTLLYPLCSALGVRGVK 340
            MQFLAQRFPATDRALLDWNSFLLIGPVTLIAAVLGSILNVVLPEAIIYTGLPIILALLACYSVQKSMELFHSEGGWAHVCSRQTESSASQGGRNDKRDGGKIVSDRGERKTTPESFKEEAKCEKIVVGISDYGTTNRAPAPSATPSFASSSSKKKKKTLLVPVGDGLHGGMEDGIEGEVWASPFQETIYTFSPSKPSEPSPTHEAAEVEEEMTSKDKDKLLSPPADVRMAVQGKKEANLWKPMILAVCFLGVALTEMVQGGRGFPSPFGISCGSSTYWILTLGSISWAGGFFLWVRQYLLLDCEAKRREGRIFSPGDVLWTPKNTLLYPLCSALGVRGVK
Sbjct:    1 MQFLAQRFPATDRALLDWNSFLLIGPVTLIAAVLGSILNVVLPEAIIYTGLPIILALLACYSVQKSMELFHSEGGWAHVCSRQTESSASQGGRNDKRDGGKIVSDRGERKTTPESFKEEAKCEKIVVGISDYGTTNRAPAPSATPSFASSSSKKKKKTLLVPVGDGLHGGMEDGIEGEVWASPFQETIYTFSPSKPSEPSPTHEAAEVEEEMTSKDKDKLLSPPADVRMAVQGKKEANLWKPMILAVCFLGVALTEMVQGGRGFPSPFGISCGSSTYWILTLGSISWAGGFFLWVRQYLLLDCEAKRREGRIFSPGDVLWTPKNTLLYPLCSALGVRGVK 340          
BLAST of EWM24459.1 vs. NCBI_GenBank
Match: gi|553193456|ref|XP_005855780.1| (hypothetical protein NGA_0626200, partial [Nannochloropsis gaditana CCMP526] >gi|422293284|gb|EKU20584.1| hypothetical protein NGA_0626200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 99.7525 bits (247), Expect = 3.996e-22
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0
Query:  214 SKDKDKLLSPPADVRMAVQGKKEANLWKPMILAVCFLGVALTEMVQG 260
            SKDKDKLLSPPADVRMAVQGKKEANLWKPMILAVCFLGVALTEMVQG
Sbjct:   23 SKDKDKLLSPPADVRMAVQGKKEANLWKPMILAVCFLGVALTEMVQG 69          
BLAST of EWM24459.1 vs. NCBI_GenBank
Match: gi|1129164611|gb|OLP76855.1| (E3 ubiquitin-protein ligase Nedd-4, partial [Symbiodinium microadriaticum])

HSP 1 Score: 83.5741 bits (205), Expect = 4.295e-14
Identity = 43/103 (41.75%), Postives = 59/103 (57.28%), Query Frame = 0
Query:  233 GKKEANL-WKPMILAVCFLGVALTEMVQGGRGFPSPFGISCGSSTYWILTLGSISWAGGFFLWVRQYLLLDCEAKRREGRIFSPGDVLWTPKNTLLYPLCSAL 334
            GK  + L +K   L VCF G     +++GG    SPFG+ CGS+ YWIL+ G+  W   F +  R  L+ + EAK + G  F PG+V W  KNT+ YPL  A+
Sbjct:  254 GKGRSRLCYKIAALTVCFAGTCALTLLKGGGHLKSPFGVECGSAGYWILSFGAAPWVLIFAVAFRILLVREFEAKLQHGYAFGPGEVRWDSKNTITYPLLCAV 356          
BLAST of EWM24459.1 vs. NCBI_GenBank
Match: gi|219112381|ref|XP_002177942.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410827|gb|EEC50756.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 72.4034 bits (176), Expect = 2.576e-10
Identity = 33/92 (35.87%), Postives = 50/92 (54.35%), Query Frame = 0
Query:  244 ILAVCFLGVALTEMVQGGRGFPSPFGISCGSSTYWILTLGSISWAGGFFLWVRQYLLLDCEAKRREGRIFSPGDVLWTPKNTLLYPLCSALG 335
            IL   F+ V    +++GG  FPSP GI CGS  +WI  L  ++W G   + +R YL+   E KRR    +  GD+ W  + T++YP+   + 
Sbjct:  424 ILVTMFIVVLTINVLKGGGAFPSPLGIRCGSRAFWIANLVMLAWIGIISVGIRAYLVRRFEQKRRLSFPYVEGDIRWDARATIVYPVVCCMA 515          
BLAST of EWM24459.1 vs. NCBI_GenBank
Match: gi|397620930|gb|EJK66001.1| (hypothetical protein THAOC_13100 [Thalassiosira oceanica])

HSP 1 Score: 67.3958 bits (163), Expect = 5.261e-9
Identity = 34/92 (36.96%), Postives = 50/92 (54.35%), Query Frame = 0
Query:  245 LAVCFLGVALTEMVQGGRGFPSPFGISCGSSTYWILTLGSISWAGGFFLWVRQYLLLDCEAKRREGRIFSPGDVLWTPKNTLLYP-LCSALG 335
            LAV F  V +  +++GG  F SP GI CGS ++W      + W      + R YL+  CE K R G  +  GD+ W  + T++YP +C+A G
Sbjct:  124 LAVTFAVVLVVNLLKGGGAFKSPLGIRCGSPSFWTANGLILGWILVVSFFARSYLVHRCEDKERVGYPYVEGDIRWDSRATVVYPAVCTAAG 215          
BLAST of EWM24459.1 vs. NCBI_GenBank
Match: gi|1210517804|dbj|GAX23205.1| (hypothetical protein FisN_21Hh114 [Fistulifera solaris])

HSP 1 Score: 68.1662 bits (165), Expect = 6.090e-9
Identity = 31/94 (32.98%), Postives = 52/94 (55.32%), Query Frame = 0
Query:  243 MILAVCFLGVALTEMVQGGRGFPSPFGISCGSSTYWILTLGSISWAGGFFLWVRQYLLLDCEAKRREGRIFSPGDVLWTPKNTLLYP-LCSALG 335
            ++L V F+ V +  + +GG  F SP GI+CGSS +W+     ++W     +  R  LL   E K     ++ PGD++W  + T++YP +C+  G
Sbjct:  446 ILLVVMFIVVLIINVSKGGGAFKSPLGITCGSSAFWMSNFLLLAWILAISIHARVVLLHKYERKAACNYVYQPGDIVWDERATVVYPIICTFAG 539          
BLAST of EWM24459.1 vs. NCBI_GenBank
Match: gi|223992571|ref|XP_002285969.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977284|gb|EED95610.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 68.1662 bits (165), Expect = 6.432e-9
Identity = 39/122 (31.97%), Postives = 63/122 (51.64%), Query Frame = 0
Query:  215 KDKDKLLSPPADVRMAVQGKKEANLWKPMILAVCFLGVALTEMVQGGRGFPSPFGISCGSSTYWILTLGSISWAGGFFLWVRQYLLLDCEAKRREGRIFSPGDVLWTPKNTLLYPL-CSALG 335
            K+K++L    ++ R   +G  +       +L V F  +    +++GG  FPSP GI CGS ++W+     I W     ++ R YL+   E K R G  +  GD+ W  + T++YPL C+A G
Sbjct:  321 KNKEELSKILSEERTVPKGNVQ-------VLLVTFTVILFINIMKGGGAFPSPLGIRCGSPSFWVSNGIMIGWILLVSVFARSYLVRRYEIKERVGFPYVEGDIRWDGRATVVYPLVCTAAG 435          
BLAST of EWM24459.1 vs. NCBI_GenBank
Match: gi|1210530877|dbj|GAX10417.1| (hypothetical protein FisN_21Lh114 [Fistulifera solaris])

HSP 1 Score: 67.0106 bits (162), Expect = 1.482e-8
Identity = 31/94 (32.98%), Postives = 51/94 (54.26%), Query Frame = 0
Query:  243 MILAVCFLGVALTEMVQGGRGFPSPFGISCGSSTYWILTLGSISWAGGFFLWVRQYLLLDCEAKRREGRIFSPGDVLWTPKNTLLYP-LCSALG 335
            ++L V F+ V +    +GG  F SP GI+CGSS +W+     ++W     +  R  LL   E K     ++ PGD++W  + T++YP +C+  G
Sbjct:  452 ILLVVMFIVVLIINASKGGGAFKSPLGITCGSSAFWMSNFLLLAWILAISIHARVVLLHKYERKAACNYVYQPGDIVWDERATVVYPIICTFAG 545          
BLAST of EWM24459.1 vs. NCBI_GenBank
Match: gi|669149614|ref|XP_008610369.1| (hypothetical protein SDRG_06368 [Saprolegnia diclina VS20] >gi|530738021|gb|EQC36263.1| hypothetical protein SDRG_06368 [Saprolegnia diclina VS20])

HSP 1 Score: 66.2402 bits (160), Expect = 2.639e-8
Identity = 81/337 (24.04%), Postives = 133/337 (39.47%), Query Frame = 0
Query:   12 DRALLDWNSFLLIGPVTLIAAVLGSILNVVLPEAIIYTGLPIILALLACYSVQKSMELFHSEGGWAHVCSRQTESSAS-----QGGRNDKRDGGKIVSDRGERKTTPESFKEEAKCEKIVVGISDYGTT-NRAPAPSATPSFASSSSKKKKKTLLVPVGDGLHGGMEDGIEGEVWASPFQETIYTFSPSKPSEPSPTHEAAEVEEEMTSKDKDKLLSPPADVRMAVQGKKEANLWKPM-ILAVCFLGVALTEMVQGGRGFPSPFGISCGSSTYWILTLGSISWAGGFFLWVRQYLLLDCEAKRRE----GRIFSPGDVLWTPKNTLLYP-LCSALGV 336
            DR L+D+   +++ P+TL   ++G  +N + PE +I   L  +L+  +   + K   ++ +E       +++    AS     Q     +R G  +V    + +        EA+   + + I D+  T N   A  AT   ASS              D ++   +D                               A+ +    T+K     LS     R  V        W  + IL   + G+ L  M++GG G PS  G+ CGS+ YW+LT  S+     FF+ V     L   A+       G  +  GD++WT + T+LYP LC+  GV
Sbjct:  172 DRQLIDYEVVVMMEPMTLAGTIIGVHMNKMCPEWLITVLLVWLLSSTSLRMITKGKSVWRAEA------AKEKALLASVVAHWQSLVAARRFGAAVVVAARKWRALKALKALEAEATAVALSIKDHSITINLQEADEATT--ASSDDD-----------DTINDAYDDD-----------------------------HASLLGRATTTKKAHLSLSSLLAFRKFVP-------WGDLTILFFAWFGLLLFSMLKGGHGAPSVIGLDCGSAAYWLLTTLSLP----FFVGVTAIFGLKIAARHEALQAFGYKYVEGDIVWTKRTTVLYPALCTVAGV 449          
BLAST of EWM24459.1 vs. NCBI_GenBank
Match: gi|1072224682|gb|OEU09431.1| (hypothetical protein FRACYDRAFT_248281 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 65.4698 bits (158), Expect = 3.512e-8
Identity = 32/98 (32.65%), Postives = 51/98 (52.04%), Query Frame = 0
Query:  239 LWKPMILAVCFLGVALTEMVQGGRGFPSPFGISCGSSTYWILTLGSISWAGGFFLWVRQYLLLDCEAKRREGRIFSPGDVLWTPKNTLLYP-LCSALG 335
            ++   IL   F+ V    +++GG  FPSP GI CGS  +WI     + W     ++ R YL+   E K + G  +  GD+ W  ++T++YP +C   G
Sbjct:  260 MFNVNILVGLFVVVLAINLLKGGGAFPSPIGIVCGSQNFWIANAIMLGWIILISIYCRAYLVQRFELKHKVGYKYIEGDIQWDDRSTIIYPGICCLAG 357          
The following BLAST results are available for this feature:
BLAST of EWM24459.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Position :
0
Zoom :
x 1
01SequenceEWM24459.1XP_005855780.1OLP76855.1XP_002177942.1EJK66001.1GAX23205.1XP_002285969.1GAX10417.1XP_008610369.1OEU09431.1
Match NameE-valueIdentityDescription
gi|585105923|gb|EWM24459.1|0.000e+0100.00hypothetical protein Naga_100512g2 [Nannochloropsi... [more]
gi|553193456|ref|XP_005855780.1|3.996e-22100.00hypothetical protein NGA_0626200, partial [Nannoch... [more]
gi|1129164611|gb|OLP76855.1|4.295e-1441.75E3 ubiquitin-protein ligase Nedd-4, partial [Symbi... [more]
gi|219112381|ref|XP_002177942.1|2.576e-1035.87predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|397620930|gb|EJK66001.1|5.261e-936.96hypothetical protein THAOC_13100 [Thalassiosira oc... [more]
gi|1210517804|dbj|GAX23205.1|6.090e-932.98hypothetical protein FisN_21Hh114 [Fistulifera sol... [more]
gi|223992571|ref|XP_002285969.1|6.432e-931.97predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210530877|dbj|GAX10417.1|1.482e-832.98hypothetical protein FisN_21Lh114 [Fistulifera sol... [more]
gi|669149614|ref|XP_008610369.1|2.639e-824.04hypothetical protein SDRG_06368 [Saprolegnia dicli... [more]
gi|1072224682|gb|OEU09431.1|3.512e-832.65hypothetical protein FRACYDRAFT_248281 [Fragilario... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6230rna6230Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications