EWM24457.1, cds6214 (CDS) Nannochloropsis gaditana

Overview
NameEWM24457.1
Unique Namecds6214
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:26015..26149 -
Alignment locationCM002468.1:25761..25837 -
Alignment locationCM002468.1:25452..25587 -
Alignment locationCM002468.1:25155..25312 -
Alignment locationCM002468.1:24685..24967 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24457.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100512g1.9604.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:26015..26149 -
CM002468.1supercontigCM002468.1:25761..25837 -
CM002468.1supercontigCM002468.1:25452..25587 -
CM002468.1supercontigCM002468.1:25155..25312 -
CM002468.1supercontigCM002468.1:24685..24967 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM24457.1 vs. NCBI_GenBank
Match: gi|585105921|gb|EWM24457.1| (hypothetical protein Naga_100512g1 [Nannochloropsis gaditana])

HSP 1 Score: 530.02 bits (1364), Expect = 0.000e+0
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 0 
Query:    1 MRSKYSYLPVAVPIAGWLLAMMVIFVVHFISSWRRRKHLVGNLPKIFLWIDPRSFLATAFRQKWNRRTFDRLILEEFQRRNYPPVIAICGPIPWVAPIFASNDATLIAEMLLLGNKTLMKKAGIKEEPPLEPFNQAVFSTTRRVLHTRMKEWEQQSGLMVRSRTRRLAQYFTKRSTSSSFLSEQQHSEVDQENGHISSPVEVLCLPPSPPHSLPPSLLSFHLPPLPPTLPPFLPSFLSRPPRALLYPINGGVSFPSRSGTRH 262
            MRSKYSYLPVAVPIAGWLLAMMVIFVVHFISSWRRRKHLVGNLPKIFLWIDPRSFLATAFRQKWNRRTFDRLILEEFQRRNYPPVIAICGPIPWVAPIFASNDATLIAEMLLLGNKTLMKKAGIKEEPPLEPFNQAVFSTTRRVLHTRMKEWEQQSGLMVRSRTRRLAQYFTKRSTSSSFLSEQQHSEVDQENGHISSPVEVLCLPPSPPHSLPPSLLSFHLPPLPPTLPPFLPSFLSRPPRALLYPINGGVSFPSRSGTRH
Sbjct:    1 MRSKYSYLPVAVPIAGWLLAMMVIFVVHFISSWRRRKHLVGNLPKIFLWIDPRSFLATAFRQKWNRRTFDRLILEEFQRRNYPPVIAICGPIPWVAPIFASNDATLIAEMLLLGNKTLMKKAGIKEEPPLEPFNQAVFSTTRRVLHTRMKEWEQQSGLMVRSRTRRLAQYFTKRSTSSSFLSEQQHSEVDQENGHISSPVEVLCLPPSPPHSLPPSLLSFHLPPLPPTLPPFLPSFLSRPPRALLYPINGGVSFPSRSGTRH 262
[Close]
BLAST of EWM24457.1 vs. NCBI_GenBank
Match: gi|553193460|ref|XP_005855781.1| (hypothetical protein NGA_0626300, partial [Nannochloropsis gaditana CCMP526] >gi|422293285|gb|EKU20585.1| hypothetical protein NGA_0626300, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 81.2629 bits (199), Expect = 9.762e-17
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0 
Query:   21 MMVIFVVHFISSWRRRKHLVGNLPKIFLWIDPRSFLAT 58
            MMVIFVVHFISSWRRRKHLVGNLPKIFLWIDPRSFLAT
Sbjct:    1 MMVIFVVHFISSWRRRKHLVGNLPKIFLWIDPRSFLAT 38
The following BLAST results are available for this feature:
BLAST of EWM24457.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105921|gb|EWM24457.1|0.000e+0100.00hypothetical protein Naga_100512g1 [Nannochloropsi... [more]
gi|553193460|ref|XP_005855781.1|9.762e-17100.00hypothetical protein NGA_0626300, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6229rna6229Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications