EWM24460.1, cds6213 (CDS) Nannochloropsis gaditana

Overview
NameEWM24460.1
Unique Namecds6213
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:18234..18343 +
Alignment locationCM002468.1:18447..18687 +
Alignment locationCM002468.1:18808..18902 +
Alignment locationCM002468.1:19245..19374 +
Alignment locationCM002468.1:19612..19690 +
Alignment locationCM002468.1:19919..19972 +
Alignment locationCM002468.1:20123..20244 +
Alignment locationCM002468.1:20377..20442 +
Alignment locationCM002468.1:20648..20806 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24460.1
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100779g1.3631.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:18234..18343 +
CM002468.1supercontigCM002468.1:18447..18687 +
CM002468.1supercontigCM002468.1:18808..18902 +
CM002468.1supercontigCM002468.1:19245..19374 +
CM002468.1supercontigCM002468.1:19612..19690 +
CM002468.1supercontigCM002468.1:19919..19972 +
CM002468.1supercontigCM002468.1:20123..20244 +
CM002468.1supercontigCM002468.1:20377..20442 +
CM002468.1supercontigCM002468.1:20648..20806 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR002925Dienelactn_hydro
IPR029058AB_hydrolase
Homology
BLAST of EWM24460.1 vs. NCBI_GenBank
Match: gi|585105926|gb|EWM24460.1| (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 717.998 bits (1852), Expect = 0.000e+0
Identity = 351/351 (100.00%), Postives = 351/351 (100.00%), Query Frame = 0
Query:    1 MEKERRLQAAMPMLQTVEAWEEARMEGAKEVVEITPRLPRKPTARASEGKMKEKKKDGAGFKDEEGLRQEEEKEGVEAKEVKEEEEEEEEEEEEEEYVPIDAMFRDEVDVTAADGTSMRGYLVSSKMAQKFWRREERPVVLLLADERGWRSVQTRKLADHMSFLSNHVFFVPDLYRGQVFKKGQSKEAWRAAHPPIRLLQDARSAMESLVRNYNATATGIVGFGVGGGQALSAVASGFIKTHAVVAMCPVGYDAPKVAEALKSTPALVIFPGQDNPEAPLQNALTLMDGFASHKALPYMVRVFKDCHLHFLTRPAPNEESAAEDAIMLATSWLEIQLRRGKAKMIRDSRIL 351
            MEKERRLQAAMPMLQTVEAWEEARMEGAKEVVEITPRLPRKPTARASEGKMKEKKKDGAGFKDEEGLRQEEEKEGVEAKEVKEEEEEEEEEEEEEEYVPIDAMFRDEVDVTAADGTSMRGYLVSSKMAQKFWRREERPVVLLLADERGWRSVQTRKLADHMSFLSNHVFFVPDLYRGQVFKKGQSKEAWRAAHPPIRLLQDARSAMESLVRNYNATATGIVGFGVGGGQALSAVASGFIKTHAVVAMCPVGYDAPKVAEALKSTPALVIFPGQDNPEAPLQNALTLMDGFASHKALPYMVRVFKDCHLHFLTRPAPNEESAAEDAIMLATSWLEIQLRRGKAKMIRDSRIL
Sbjct:    1 MEKERRLQAAMPMLQTVEAWEEARMEGAKEVVEITPRLPRKPTARASEGKMKEKKKDGAGFKDEEGLRQEEEKEGVEAKEVKEEEEEEEEEEEEEEYVPIDAMFRDEVDVTAADGTSMRGYLVSSKMAQKFWRREERPVVLLLADERGWRSVQTRKLADHMSFLSNHVFFVPDLYRGQVFKKGQSKEAWRAAHPPIRLLQDARSAMESLVRNYNATATGIVGFGVGGGQALSAVASGFIKTHAVVAMCPVGYDAPKVAEALKSTPALVIFPGQDNPEAPLQNALTLMDGFASHKALPYMVRVFKDCHLHFLTRPAPNEESAAEDAIMLATSWLEIQLRRGKAKMIRDSRIL 351          
BLAST of EWM24460.1 vs. NCBI_GenBank
Match: gi|553193439|ref|XP_005855775.1| (alpha beta-hydrolase domain-containing protein [Nannochloropsis gaditana CCMP526] >gi|422293279|gb|EKU20579.1| alpha beta-hydrolase domain-containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 367.466 bits (942), Expect = 1.533e-125
Identity = 179/197 (90.86%), Postives = 179/197 (90.86%), Query Frame = 0
Query:  103 MFRDEVDVTAADGTSMRGYLVSSKMAQKFWRREERPVVLLLADERGWRSVQTRKLADHMSFLSNHVFFVPDLYRGQVFKKGQSKEAWRAAHPPIRLLQDARSAMESLVRNYNATATGIVGFGVGGGQALSAVASGFIKTHAVVAMCPVGYDAPKVAEALKSTPALVIFPGQDNPEAPLQNALTLMDGFASHKALPYM 299
            MFRDEVDVTAADGTSMRGYLVSSKMAQKFWRREERPVVLLLADERGWRSVQTRKLADHMSFLSNHVFFVPDLYRGQVFKKGQSKEAWRAAHPPIRLLQDARSAMESLVRNYNATAT                  GFIKTHAVVAMCPVGYDAPKVAEALKSTPALVIFPGQDNPEAPLQNALTLMDGFASHKALPYM
Sbjct:    1 MFRDEVDVTAADGTSMRGYLVSSKMAQKFWRREERPVVLLLADERGWRSVQTRKLADHMSFLSNHVFFVPDLYRGQVFKKGQSKEAWRAAHPPIRLLQDARSAMESLVRNYNATAT------------------GFIKTHAVVAMCPVGYDAPKVAEALKSTPALVIFPGQDNPEAPLQNALTLMDGFASHKALPYM 179          
BLAST of EWM24460.1 vs. NCBI_GenBank
Match: gi|299470810|emb|CBN78633.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 125.561 bits (314), Expect = 2.725e-28
Identity = 81/249 (32.53%), Postives = 129/249 (51.81%), Query Frame = 0
Query:  101 DAMFRDEVDVTAADGTSMRGYLVSSKMAQKFWR-----REERPVVLLLADERGWRSVQTRKLADHMSFLSNHVFFVPDLYRGQVFKKGQSKEA---WRAAHPPIRLLQDARSAMESLVRNYNATATGIVGFGVGGGQALSAVASGFIKTHAVVAMCPVGYDAPKVAEALKSTPALVIFPGQDN-PEAPLQNALTLMDGFASHKALP-YMVRVFKDCHLHFLTRPAPNEESAAEDAIMLATSWLEIQLRR 339
            +  F  E  +  AD      Y+VS+K A + W      R E  VV+LL D  G+    TR  AD ++ + + +  VPD++R + +   Q +E    WR++H P+ +  D R+ ++   + Y AT+ G+VGF  GGG+AL   A+G +K   VV   P  YD  +VA  + + P    F   D  P A +++A  L +    ++ +P + VR+       F  RP   +   AEDA++LATSWLE+ L++
Sbjct:  294 ETTFELEEGLQPADVPRSDAYVVSTKKALRPWDGPHADRAETHVVVLLTDVFGYGDSFTRNAADEIAEVCDAIVVVPDMFRRRPWTHEQPEEEYEDWRSSHDPVAVANDIRACVDFARKEYKATSLGLVGFCYGGGRALEEAAAGVVKPDNVVVFYPTRYDVSEVASRV-TCPVAAFFAEHDVLPGATVEDACALREQLRDNEKVPDFQVRLCPGAGHGFAHRPTEKDTENAEDAMLLATSWLELYLQK 541          
BLAST of EWM24460.1 vs. NCBI_GenBank
Match: gi|873236190|emb|CEL99425.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 84.3445 bits (207), Expect = 3.081e-14
Identity = 65/232 (28.02%), Postives = 106/232 (45.69%), Query Frame = 0
Query:  134 REERPVVLLLADERGWRSVQTRKLADHMSFLSNHVFFVPDLYRGQVFKKGQSK---EAWRAAHPPIRLLQDARSAMESLVRNYNATATGIVGFGVGGGQAL--------------SAVASGFI--KTHAVVAMCPVGYDAPKVAEALKSTPALVIFPGQDN-PEAPLQNALTLMDGF-ASHKALPYMVRVFKDCHLHFLTRPAPN-------EESAAEDAIMLATSWLEIQL 337
            R+ R  VL+L D  G+R    R++AD ++   +   FVPDL+ GQ +   +     EAWR+ H P R+     +++  L  +Y      +VGF  GGG+AL              +AV    +      VVA  P  YD   +   ++  P   ++   D  P A   +A  L + F A+     +MV++F +    F+ + A +       E+  AE A +++TS+LE  L
Sbjct:  233 RDPRRAVLMLTDVFGYRDRFMRRVADRLADTLSLPVFVPDLFLGQPWSADRPPAEYEAWRSQHDPDRVDDTIGASLRFLKESYKMDVIAVVGFCYGGGRALETGVRYGGMEEAEGAAVCRNRVDKSVRCVVAFYPTRYDVEAIGRQMR-VPTCCVYAANDTLPGARKADAERLYEAFRANEDLFDFMVQIFDNTTHGFVHQSARDWTNDLQEEDQKAEKAYLISTSFLEFWL 463          
BLAST of EWM24460.1 vs. NCBI_GenBank
Match: gi|546316576|ref|XP_005716187.1| (unnamed protein product [Chondrus crispus] >gi|507112700|emb|CDF36368.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 74.7146 bits (182), Expect = 7.294e-12
Identity = 67/241 (27.80%), Postives = 115/241 (47.72%), Query Frame = 0
Query:  106 DEVDVTAADGTSMRGYLVSSKMAQKFWRREERPVVLLLADERGWRSVQTRKLADHMSFLSNHVF--FVPDLYRGQVFKKGQSK---EAWRAAHPPIRLLQDARSAMESLVRNYNATATGIVGFGVGGGQALSAVA--SGFIKTHAVVAMCPVGYDAPKVAEALKSTPALVIFPGQDNPEAPLQNALTLMDGFASHKALP-YMVRVFKDCHLHFLTRPAPNEESA-AEDAIMLATSWLEIQL 337
            +E+ + A+DG ++  +LV S+       R  R  V+L+ D  G+ + +TR +A     L+ H F   VPDL+RG  + +G+ K   E+WR  H P  +  D   A ++L      T+ G+VGF  GGG+ +  VA  +  +   A VA  P  +D   V     +   L++  G  +   P+    TL +   ++ ++  + V V++     F   P+   + A +E A   A +WL+  L
Sbjct:    9 EELQLHASDGATVAAFLVRSQP-----HRPSRTAVVLMTDILGYENHETRAVA---MLLAAHGFTTIVPDLFRGNPWVQGRDKSEYESWRRTHDPATVRGDILLARQALTERSLGTSLGLVGFCFGGGRLMEEVALNTSGLNPDAAVAFYPTRFDPEDVGR--NAHCPLLVQTGDRDDLVPVYVVNTLRETLQANASVKEWNVEVYEGFGHAFAHHPSSEADKAQSEVAFARALAWLKRHL 239          
BLAST of EWM24460.1 vs. NCBI_GenBank
Match: gi|902229262|gb|KNA21438.1| (hypothetical protein SOVF_043210 [Spinacia oleracea])

HSP 1 Score: 68.5514 bits (166), Expect = 1.255e-9
Identity = 61/209 (29.19%), Postives = 99/209 (47.37%), Query Frame = 0
Query:  140 VLLLADERGWRSVQTRKLADHMSFLSNHVFFVPDLYRGQVFKKGQSK---EAWRAAHPPIRLLQDARSAMESLVRNYNATAT----GIVGFGVGGGQALSAVASGFIKTHAVVAMCPVGYDAPKVAEALKST---PALVIFPGQDNPEAPLQNALTLMDGFASHKALPYMVRVFKDCHLHFLTRPAPNEES-AAEDAIMLATSWLEIQL 337
            +LLL+D  G+    TR  A  ++  + +   VPDL+RG  + K QS+   E W A H PI + +D   + + +V  + A+ +    GI+GF  GGG+ L  +A    K    V    V +   ++  +  S    P L +   +D    PL   +T+++   +       V VFK     F+ RP   E+   AE+A M+  +WL+ QL
Sbjct:   54 ILLLSDIFGFEDSYTRDFAYRVA-CNGYNVLVPDLFRGDPWSKDQSQAQLEEWLAKHDPITMAKDIEMSTKWMVDEFMASESSKKLGIIGFCYGGGRVLEVLA----KDQGSVFGTGVSFYGTRMDLSTASNVKVPVLFVTGDKD----PLCQ-VTVLNELGNIIGNNSKVVVFKGQGHGFVHRPESLEQDEDAEEAFMIMRNWLQNQL 252          
BLAST of EWM24460.1 vs. NCBI_GenBank
Match: gi|1137197756|gb|OMO69398.1| (Dienelactone hydrolase [Corchorus capsularis])

HSP 1 Score: 67.0106 bits (162), Expect = 3.742e-9
Identity = 62/209 (29.67%), Postives = 95/209 (45.45%), Query Frame = 0
Query:  140 VLLLADERGWRSVQTRKLADHMSFLSNHVFFVPDLYRGQVFKKGQSK---EAWRAAHPPIRLLQDARSAMESLVRNYNATA----TGIVGFGVGGGQALSAVA---SGFIKTHAVVAMCPVGYDAPKVAEALKSTPALVIFPGQDNPEAPLQNALTLMDGFASHKALPYMVRVFKDCHLHFLTRP-APNEESAAEDAIMLATSWLEIQL 337
            VLLL D  G++   TR  A  ++    +V  VPDL+RG  + KG+ K   E W A+  P R+ +D  ++ + +V  + A       GI+GF  GGG+ +  +A    G   T    A+   G      A +    P L I  G ++P  P    +++++ F         V +FK     F  RP +P E+  AE A  L  +WL   L
Sbjct:   55 VLLLTDIFGFQDSATRDFAYQVACHGYNVL-VPDLFRGDPWGKGRPKTMFEQWLASQDPKRVARDIETSTKWMVDEFTAAGLSKKLGIMGFCFGGGRVIDVLAVDEGGCFST----AVSFYGTRMDLSAASKVKVPVLFI-SGDNDPLCP----VSVLNEFEKGIGRGSKVVIFKGRGHAFAHRPGSPEEDVDAEQAFTLMRNWLHDGL 253          
BLAST of EWM24460.1 vs. NCBI_GenBank
Match: gi|1109212627|ref|XP_019180771.1| (PREDICTED: carboxymethylenebutenolidase homolog isoform X2 [Ipomoea nil])

HSP 1 Score: 66.2402 bits (160), Expect = 1.017e-8
Identity = 63/239 (26.36%), Postives = 112/239 (46.86%), Query Frame = 0
Query:  108 VDVTAAD-GTSMRGYLVSSKMAQKFWRREERPVVLLLADERGWRSVQTRKLADHMSFLSNHVFFVPDLYRGQVFKKGQ---SKEAWRAAHPPIRLLQDARSAMESLVRNYNATAT----GIVGFGVGGGQALSAVASGFIKTHAVVAMCPVGYDAPKVAEALKS---TPALVIFPGQDNPEAPLQNALTLMDGFASHKALPYMVRVFKDCHLHFLTRP-APNEESAAEDAIMLATSWLE 334
            V+++  D G S+  YL+++       +      +LLL+D  G+    TR  A  ++  + +   VPDL+RG  + K +   S E W       R++QD  +++E +V  + A       G++GF  GGG  L  +A    K         + +   ++  +L +   +P L+I  G D+P  P+    ++++  A       +V VFK     F+ RP +P E+  AE+A ++  SWL 
Sbjct:   52 VELSIGDEGDSIDAYLLTAV------KNNNGTGILLLSDVFGFEDSFTRDFAYRVA-CNGYNVLVPDLFRGDPWGKDRPAASFEQWIGKQDRNRVIQDTFTSVEWMVNEFVAAGISKKLGVIGFCYGGGLTLDILA----KDQGSSFGAGISFYGTRINTSLSTKIKSPLLLI-SGNDDPLCPV----SVLNNVAKDVEKSKVV-VFKGRGHGFVHRPQSPEEDRDAEEAFVIMRSWLN 273          
BLAST of EWM24460.1 vs. NCBI_GenBank
Match: gi|1137210271|gb|OMO78867.1| (Dienelactone hydrolase [Corchorus olitorius])

HSP 1 Score: 65.855 bits (159), Expect = 1.838e-8
Identity = 62/209 (29.67%), Postives = 96/209 (45.93%), Query Frame = 0
Query:  140 VLLLADERGWRSVQTRKLADHMSFLSNHVFFVPDLYRGQVFKKGQSK---EAWRAAHPPIRLLQDARSAMESLVRNYNATA----TGIVGFGVGGGQALSAVAS---GFIKTHAVVAMCPVGYDAPKVAEALKSTPALVIFPGQDNPEAPLQNALTLMDGFASHKALPYMVRVFKDCHLHFLTRP-APNEESAAEDAIMLATSWLEIQL 337
            VLLL D  G++   TR  A  ++    +V  VPDL+RG  + KG+ K   E W A+  P R+ +D  ++ + +V  + A       GI+GF  GGG+ +  +A+   G   T    A+   G      A +    P L I  G ++P  P    +++++ F         V +FK     F  RP +P E+  AE A  L  +WL   L
Sbjct:  109 VLLLTDIFGFQDSATRDFAYQVACHGYNVL-VPDLFRGDPWGKGRPKTMFEQWLASQDPKRVARDIETSTKWMVDEFTAAGLSKKLGIMGFCFGGGRVIDILAADEGGCFST----AVSFYGTRMDVSAASKVKVPVLFI-SGDNDPLCP----VSVLNEFEKGIGRGSKVVIFKGRGHAFAHRPGSPEEDVDAEQAFTLMRTWLHDGL 307          
BLAST of EWM24460.1 vs. NCBI_GenBank
Match: gi|1109212625|ref|XP_019180770.1| (PREDICTED: carboxymethylenebutenolidase homolog isoform X1 [Ipomoea nil])

HSP 1 Score: 65.4698 bits (158), Expect = 2.470e-8
Identity = 70/277 (25.27%), Postives = 120/277 (43.32%), Query Frame = 0
Query:   70 EEEKEGVEAKEVKEEEEEEEEEEEEEEYVPIDAMFRDEVDVTAAD-GTSMRGYLVSSKMAQKFWRREERPVVLLLADERGWRSVQTRKLADHMSFLSNHVFFVPDLYRGQVFKKGQ---SKEAWRAAHPPIRLLQDARSAMESLVRNYNATAT----GIVGFGVGGGQALSAVASGFIKTHAVVAMCPVGYDAPKVAEALKS---TPALVIFPGQDNPEAPLQNALTLMDGFASHKALPYMVRVFKDCHLHFLTRP-APNEESAAEDAIMLATSWLE 334
            + +K  V   +VK E+E  E                + V+++  D G S+  YL+++       +      +LLL+D  G+    TR  A  ++  + +   VPDL+RG  + K +   S E W       R++QD  +++E +V  + A       G++GF  GGG  L  +A    K         + +   ++  +L +   +P L+I  G D+P  P+     +       K     V VFK     F+ RP +P E+  AE+A ++  SWL 
Sbjct:   50 KTKKHNVCCCQVKVEDEACE--------------LVNGVELSIGDEGDSIDAYLLTAV------KNNNGTGILLLSDVFGFEDSFTRDFAYRVA-CNGYNVLVPDLFRGDPWGKDRPAASFEQWIGKQDRNRVIQDTFTSVEWMVNEFVAAGISKKLGVIGFCYGGGLTLDILA----KDQGSSFGAGISFYGTRINTSLSTKIKSPLLLI-SGNDDPLCPVSVLNNVAKDVEKSK-----VVVFKGRGHGFVHRPQSPEEDRDAEEAFVIMRSWLN 295          
The following BLAST results are available for this feature:
BLAST of EWM24460.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105926|gb|EWM24460.1|0.000e+0100.00conserved unknown protein [Nannochloropsis gaditan... [more]
gi|553193439|ref|XP_005855775.1|1.533e-12590.86alpha beta-hydrolase domain-containing protein [Na... [more]
gi|299470810|emb|CBN78633.1|2.725e-2832.53conserved unknown protein [Ectocarpus siliculosus][more]
gi|873236190|emb|CEL99425.1|3.081e-1428.02unnamed protein product [Vitrella brassicaformis C... [more]
gi|546316576|ref|XP_005716187.1|7.294e-1227.80unnamed protein product [Chondrus crispus] >gi|507... [more]
gi|902229262|gb|KNA21438.1|1.255e-929.19hypothetical protein SOVF_043210 [Spinacia olerace... [more]
gi|1137197756|gb|OMO69398.1|3.742e-929.67Dienelactone hydrolase [Corchorus capsularis][more]
gi|1109212627|ref|XP_019180771.1|1.017e-826.36PREDICTED: carboxymethylenebutenolidase homolog is... [more]
gi|1137210271|gb|OMO78867.1|1.838e-829.67Dienelactone hydrolase [Corchorus olitorius][more]
gi|1109212625|ref|XP_019180770.1|2.470e-825.27PREDICTED: carboxymethylenebutenolidase homolog is... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6228rna6228Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications