EWM24477.1, cds6199 (CDS) Nannochloropsis gaditana

Overview
NameEWM24477.1
Unique Namecds6199
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:865237..865317 -
Alignment locationCM002467.1:864898..865032 -
Alignment locationCM002467.1:864679..864768 -
Alignment locationCM002467.1:864383..864543 -
Alignment locationCM002467.1:864168..864239 -
Alignment locationCM002467.1:863718..863973 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24477.1
ProductMitochondrial carrier domain protein
Orig transcript idgnl|cribi|Naga_100239g4.3875.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:865237..865317 -
CM002467.1supercontigCM002467.1:864898..865032 -
CM002467.1supercontigCM002467.1:864679..864768 -
CM002467.1supercontigCM002467.1:864383..864543 -
CM002467.1supercontigCM002467.1:864168..864239 -
CM002467.1supercontigCM002467.1:863718..863973 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0042221response to chemical
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR018108Mitochondrial_sb/sol_carrier
IPR023395Mt_carrier_dom
Homology
BLAST of EWM24477.1 vs. NCBI_GenBank
Match: gi|585105947|gb|EWM24477.1| (Mitochondrial carrier domain protein [Nannochloropsis gaditana])

HSP 1 Score: 536.569 bits (1381), Expect = 0.000e+0
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 0
Query:    1 MTHNEKRQHWLKEGAIGLGTGVLYGVTSVAVGHPFDTIKTKMQAQEGFIKGPGMVRSFSTVLKTQGLPGLYKGALPPLLGSGVYRSTQFAVFEALYTKWDNEVGREEIPHTQGVQVRVVGAAVAAATARSLLECPIEFAKVARQTGQDWKLGQVYRGFGLQLGRTGGVMTTYFVTVDAIRRHHPSVFETKIGQFLASAGAATFGFWVVWPLEVLKNQVTGPLRLFSSPLSSWQSLFLVLFSSFSPVHFYRIFLRCTRSSVLFFG 264
            MTHNEKRQHWLKEGAIGLGTGVLYGVTSVAVGHPFDTIKTKMQAQEGFIKGPGMVRSFSTVLKTQGLPGLYKGALPPLLGSGVYRSTQFAVFEALYTKWDNEVGREEIPHTQGVQVRVVGAAVAAATARSLLECPIEFAKVARQTGQDWKLGQVYRGFGLQLGRTGGVMTTYFVTVDAIRRHHPSVFETKIGQFLASAGAATFGFWVVWPLEVLKNQVTGPLRLFSSPLSSWQSLFLVLFSSFSPVHFYRIFLRCTRSSVLFFG
Sbjct:    1 MTHNEKRQHWLKEGAIGLGTGVLYGVTSVAVGHPFDTIKTKMQAQEGFIKGPGMVRSFSTVLKTQGLPGLYKGALPPLLGSGVYRSTQFAVFEALYTKWDNEVGREEIPHTQGVQVRVVGAAVAAATARSLLECPIEFAKVARQTGQDWKLGQVYRGFGLQLGRTGGVMTTYFVTVDAIRRHHPSVFETKIGQFLASAGAATFGFWVVWPLEVLKNQVTGPLRLFSSPLSSWQSLFLVLFSSFSPVHFYRIFLRCTRSSVLFFG 264          
BLAST of EWM24477.1 vs. NCBI_GenBank
Match: gi|553184811|ref|XP_005854150.1| (hypothetical protein NGA_0198700 [Nannochloropsis gaditana CCMP526] >gi|422294912|gb|EKU22212.1| hypothetical protein NGA_0198700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 444.121 bits (1141), Expect = 2.649e-156
Identity = 218/218 (100.00%), Postives = 218/218 (100.00%), Query Frame = 0
Query:    1 MTHNEKRQHWLKEGAIGLGTGVLYGVTSVAVGHPFDTIKTKMQAQEGFIKGPGMVRSFSTVLKTQGLPGLYKGALPPLLGSGVYRSTQFAVFEALYTKWDNEVGREEIPHTQGVQVRVVGAAVAAATARSLLECPIEFAKVARQTGQDWKLGQVYRGFGLQLGRTGGVMTTYFVTVDAIRRHHPSVFETKIGQFLASAGAATFGFWVVWPLEVLKNQV 218
            MTHNEKRQHWLKEGAIGLGTGVLYGVTSVAVGHPFDTIKTKMQAQEGFIKGPGMVRSFSTVLKTQGLPGLYKGALPPLLGSGVYRSTQFAVFEALYTKWDNEVGREEIPHTQGVQVRVVGAAVAAATARSLLECPIEFAKVARQTGQDWKLGQVYRGFGLQLGRTGGVMTTYFVTVDAIRRHHPSVFETKIGQFLASAGAATFGFWVVWPLEVLKNQV
Sbjct:    1 MTHNEKRQHWLKEGAIGLGTGVLYGVTSVAVGHPFDTIKTKMQAQEGFIKGPGMVRSFSTVLKTQGLPGLYKGALPPLLGSGVYRSTQFAVFEALYTKWDNEVGREEIPHTQGVQVRVVGAAVAAATARSLLECPIEFAKVARQTGQDWKLGQVYRGFGLQLGRTGGVMTTYFVTVDAIRRHHPSVFETKIGQFLASAGAATFGFWVVWPLEVLKNQV 218          
BLAST of EWM24477.1 vs. NCBI_GenBank
Match: gi|919011054|ref|XP_013389954.1| (PREDICTED: mitochondrial arginine transporter BAC2-like [Lingula anatina])

HSP 1 Score: 274.633 bits (701), Expect = 4.598e-89
Identity = 131/221 (59.28%), Postives = 170/221 (76.92%), Query Frame = 0
Query:    1 MTHNEKRQHWLKEGAIGLGTGVLYGVTSVAVGHPFDTIKTKMQAQEGFIKGPGMVRSFSTVLKTQGLPGLYKGALPPLLGSGVYRSTQFAVFEALYTKWDNEVGREEIPHTQGVQVRVVGAAVAAATARSLLECPIEFAKVARQTGQDWKLGQVYRGFGLQLGRTGGVMTTYFVTVDAIRRHHPSVFETK-IGQFLASAGAATFGFWVVWPLEVLKNQVTG 220
            MTHNE+R HW+KEG IGLG GVLYG TSVAVGHPFDTIKTKMQAQ GF KG GM+++ +  +K+QG+ GLY+G +PPL GSG+YRSTQFAVFEA+YTK D+  G+ EIP T G+Q+RV+   + A+TAR+++E P+E+AK+ RQ    W + +VY GFG+ L RT G+MT+YF+ VD IRR+H   F+   +G FL S  AAT  +W+VWPLE +K+QV G
Sbjct:    1 MTHNEERAHWIKEGFIGLGVGVLYGTTSVAVGHPFDTIKTKMQAQVGFEKG-GMLKTLAKTIKSQGVIGLYRGCIPPLCGSGIYRSTQFAVFEAVYTKMDSNFGKYEIPATAGLQIRVIIGGLVASTARAVIETPLEYAKIRRQIQSTWTIREVYNGFGISLSRTLGLMTSYFIMVDYIRRNHAEHFQRPLLGPFLTSGIAATLAWWLVWPLEFMKSQVQG 220          
BLAST of EWM24477.1 vs. NCBI_GenBank
Match: gi|1207976084|ref|XP_021378957.1| (protein dif-1-like [Mizuhopecten yessoensis] >gi|1205887159|gb|OWF38144.1| Mitochondrial substrate carrier family protein S [Mizuhopecten yessoensis])

HSP 1 Score: 273.863 bits (699), Expect = 9.141e-89
Identity = 140/265 (52.83%), Postives = 184/265 (69.43%), Query Frame = 0
Query:    1 MTHNEKRQHWLKEGAIGLGTGVLYGVTSVAVGHPFDTIKTKMQAQEGFIKGPGMVRSFSTVLKTQGLPGLYKGALPPLLGSGVYRSTQFAVFEALYTKWDNEVGREEIPHTQGVQVRVVGAAVAAATARSLLECPIEFAKVARQTGQDWKLGQVYRGFGLQLGRTGGVMTTYFVTVDAIRRHHPSVFETKI-GQFLASAGAATFGFWVVWPLEVLKNQVTGPLRLFSSPLSSWQSLFLVLFSSFSPVHFYRIFLRCTRSSVLFFG 264
            MTHNE+R HW+KEGAIGLG GVLYG+T+  VGHPFDTIKTKMQ Q G+ K   M ++    L+TQG+ GLY+G +PPL GSG+YRS+QFAVFEA+YT +D+ VGR EIP   G+Q+RVVGA V A+T+R+++E P+E+AKV RQT Q W+L +VY GFG+   RT G+MTTYF+ VD+IRRH P +F+  I G FL S  AAT  +W+VWPLE +K Q+      + + +  WQ +  ++         YR  +  T  S L  G
Sbjct:    1 MTHNEERAHWVKEGAIGLGVGVLYGLTNTCVGHPFDTIKTKMQGQVGYEK-TNMFQTLGKTLRTQGVIGLYRGCIPPLWGSGIYRSSQFAVFEAMYTYFDSPVGRYEIPGLAGLQLRVVGAGVIASTSRAIIETPLEYAKVRRQTQQTWQLRKVYTGFGVTWARTIGLMTTYFMLVDSIRRHFPDLFKQPILGPFLTSGLAATAAWWIVWPLEYMKCQIQAD---YGNKMPVWQRMRFIVRERGGFFALYRGIMPGTIRSFLANG 261          
BLAST of EWM24477.1 vs. NCBI_GenBank
Match: gi|240995037|ref|XP_002404567.1| (carnitine-acylcarnitine carrier protein, putative [Ixodes scapularis] >gi|215491589|gb|EEC01230.1| carnitine-acylcarnitine carrier protein, putative [Ixodes scapularis])

HSP 1 Score: 271.166 bits (692), Expect = 1.186e-87
Identity = 133/221 (60.18%), Postives = 165/221 (74.66%), Query Frame = 0
Query:    1 MTHNEKRQHWLKEGAIGLGTGVLYGVTSVAVGHPFDTIKTKMQAQEGFIKGPGMVRSFSTVLKTQGLPGLYKGALPPLLGSGVYRSTQFAVFEALYTKWDNEVGREEIPHTQGVQVRVVGAAVAAATARSLLECPIEFAKVARQTGQDWKLGQVYRGFGLQLGRTGGVMTTYFVTVDAIRRHHPSVFETK-IGQFLASAGAATFGFWVVWPLEVLKNQVTG 220
            MTHNE+R HW+KEGAIGLG GVLYGVT+V VGHPFDTIKTKMQAQ GF +   M +SF   LKT G+ GLY+G +PPLLGSG+YRS QFAVFEA YT  D  + R EIP T G+Q RVV   V A+TAR+++ECP+E+AK++RQ GQ W L +VY GFG+   RT G+MT+YF+ +D+ RRH    F+   +G FL S  AAT  +W+VWPLE +K+QV G
Sbjct:    1 MTHNEERTHWIKEGAIGLGVGVLYGVTNVCVGHPFDTIKTKMQAQAGF-ESCSMFQSFRKTLKTGGVIGLYRGCVPPLLGSGIYRSVQFAVFEAAYTYLDGSIARSEIPFTAGLQTRVVVGGVIASTARAIIECPLEYAKISRQIGQTWTLRKVYTGFGVTWLRTVGLMTSYFIFLDSGRRHFNDYFQRPLLGPFLISGLAATAAWWIVWPLEYMKSQVQG 220          
BLAST of EWM24477.1 vs. NCBI_GenBank
Match: gi|1191070218|ref|XP_020913754.1| (mitochondrial substrate carrier family protein L-like isoform X2 [Exaiptasia pallida])

HSP 1 Score: 265.774 bits (678), Expect = 4.511e-86
Identity = 134/221 (60.63%), Postives = 163/221 (73.76%), Query Frame = 0
Query:    1 MTHNEKRQHWLKEGAIGLGTGVLYGVTSVAVGHPFDTIKTKMQAQEGFIKGPGMVRSFSTVLKTQGLPGLYKGALPPLLGSGVYRSTQFAVFEALYTKWDNEVGREEIPHTQGVQVRVVGAAVAAATARSLLECPIEFAKVARQTGQDWKLGQVYRGFGLQLGRTGGVMTTYFVTVDAIRRHHPSVFETK-IGQFLASAGAATFGFWVVWPLEVLKNQVTG 220
            MTHNEKR  WL+EG IGLG GVLYG TSVAVGHPFDTIKTKMQAQ GF K  GM+ SF   L+ QG+ GLY+G +PPL GSG+YRSTQFAVFEA+YT  +   G +EIP T G+QVRV+ A   A+T R+++E P+E AK+ RQTGQ W+   +YRGFG+   RT G+M TYFV VD+ RRH P  F+   +G FL S  AAT  +W+VWPLE +K+QV G
Sbjct:    1 MTHNEKRIGWLQEGLIGLGVGVLYGTTSVAVGHPFDTIKTKMQAQAGFEK-TGMISSFVKTLRQQGIKGLYRGCVPPLWGSGIYRSTQFAVFEAIYTMMNTRRGVQEIPFTSGLQVRVLVAGAFASTTRAIIETPLELAKIRRQTGQSWQFKGLYRGFGVTWCRTMGLMCTYFVLVDSGRRHFPDHFKKPLLGPFLTSGIAATLAWWLVWPLEYMKSQVQG 220          
BLAST of EWM24477.1 vs. NCBI_GenBank
Match: gi|1191070216|ref|XP_020913753.1| (mitochondrial ornithine transporter 2-like isoform X1 [Exaiptasia pallida])

HSP 1 Score: 265.774 bits (678), Expect = 1.259e-85
Identity = 134/221 (60.63%), Postives = 163/221 (73.76%), Query Frame = 0
Query:    1 MTHNEKRQHWLKEGAIGLGTGVLYGVTSVAVGHPFDTIKTKMQAQEGFIKGPGMVRSFSTVLKTQGLPGLYKGALPPLLGSGVYRSTQFAVFEALYTKWDNEVGREEIPHTQGVQVRVVGAAVAAATARSLLECPIEFAKVARQTGQDWKLGQVYRGFGLQLGRTGGVMTTYFVTVDAIRRHHPSVFETK-IGQFLASAGAATFGFWVVWPLEVLKNQVTG 220
            MTHNEKR  WL+EG IGLG GVLYG TSVAVGHPFDTIKTKMQAQ GF K  GM+ SF   L+ QG+ GLY+G +PPL GSG+YRSTQFAVFEA+YT  +   G +EIP T G+QVRV+ A   A+T R+++E P+E AK+ RQTGQ W+   +YRGFG+   RT G+M TYFV VD+ RRH P  F+   +G FL S  AAT  +W+VWPLE +K+QV G
Sbjct:    1 MTHNEKRIGWLQEGLIGLGVGVLYGTTSVAVGHPFDTIKTKMQAQAGFEK-TGMISSFVKTLRQQGIKGLYRGCVPPLWGSGIYRSTQFAVFEAIYTMMNTRRGVQEIPFTSGLQVRVLVAGAFASTTRAIIETPLELAKIRRQTGQSWQFKGLYRGFGVTWCRTMGLMCTYFVLVDSGRRHFPDHFKKPLLGPFLTSGIAATLAWWLVWPLEYMKSQVQG 220          
BLAST of EWM24477.1 vs. NCBI_GenBank
Match: gi|1005455434|ref|XP_015764849.1| (PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Acropora digitifera])

HSP 1 Score: 261.922 bits (668), Expect = 4.215e-84
Identity = 140/221 (63.35%), Postives = 172/221 (77.83%), Query Frame = 0
Query:    1 MTHNEKRQHWLKEGAIGLGTGVLYGVTSVAVGHPFDTIKTKMQAQEGFIKGPGMVRSFSTVLKTQGLPGLYKGALPPLLGSGVYRSTQFAVFEALYTKWDNEVGREEIPHTQGVQVRVVGAAVAAATARSLLECPIEFAKVARQTGQDWKLGQVYRGFGLQLGRTGGVMTTYFVTVDAIRRHHPSVFETKI-GQFLASAGAATFGFWVVWPLEVLKNQVTG 220
            MTHNEKR HW++EG IGLG GVLYG TSVAVGHPFDTIKTKMQAQ+GF +  GM+R+F+  +K QG+ GLYKG++PPL GSG+YRSTQFAVFEALYT + N  GR EIP T G+QVRV+ A  AAATAR+++E P+E AK+ RQTGQ W+   +YRGFG+   RT G+M TYF+ +D+ RR  P +F   I G FLAS  AATF +W+VWPLE +K+QV G
Sbjct:    1 MTHNEKRIHWIQEGLIGLGVGVLYGTTSVAVGHPFDTIKTKMQAQKGF-EHEGMIRTFTRTVKAQGIRGLYKGSIPPLWGSGIYRSTQFAVFEALYT-YFNGFGRREIPLTGGLQVRVLLAGAAAATARAIIETPLELAKIRRQTGQTWQFKGLYRGFGVTWYRTMGLMCTYFILLDSGRRKFPDLFRRPILGPFLASGIAATFAWWIVWPLENMKSQVQG 219          
BLAST of EWM24477.1 vs. NCBI_GenBank
Match: gi|340380117|ref|XP_003388570.1| (PREDICTED: mitochondrial substrate carrier family protein S-like [Amphimedon queenslandica])

HSP 1 Score: 258.07 bits (658), Expect = 1.671e-82
Identity = 136/253 (53.75%), Postives = 173/253 (68.38%), Query Frame = 0
Query:    1 MTHNEKRQHWLKEGAIGLGTGVLYGVTSVAVGHPFDTIKTKMQAQEGFIKGPGMVRSFSTVLKTQGLPGLYKGALPPLLGSGVYRSTQFAVFEALYTKWD--NEVGREEIPHTQGVQVRVVGAAVAAATARSLLECPIEFAKVARQTGQDWKLGQVYRGFGLQLGRTGGVMTTYFVTVDAIRRHHPSVFETKI-GQFLASAGAATFGFWVVWPLEVLKNQVTGPLRLFSSPLSSWQSLFLVLFSSFSPVHFYR 250
            MTHNEKR  W +EG IGLG GVLYG TSVAVGHPFDTIKTKMQAQ+GF +   M  SF   L+TQG+ GLYKG LPPL+GSG++RS QFAVFE +YT  D  +  G+ EI  T G+Q RVV   +  +T R+++E P+E+AK+ RQT Q+W+LGQVY+GFG+   RT G+M TYF+ +D  RR +P +F   I G F+ S  AATF +WVVWP E +K+Q+ G     +  LS  Q + LV+      V  YR
Sbjct:    1 MTHNEKRTSWWREGLIGLGVGVLYGTTSVAVGHPFDTIKTKMQAQKGF-ESSSMYSSFIKTLQTQGIRGLYKGCLPPLMGSGIFRSAQFAVFEGVYTYLDKYDTFGKREIHFTCGLQHRVVIGGLCGSTVRAIIETPLEYAKIRRQTQQEWRLGQVYKGFGVTWLRTVGLMCTYFIIIDHNRRRNPHLFNIPILGPFIVSGFAATFAWWVVWPFEYMKSQIQGGYG--NKDLSLIQRMRLVVKERGGVVGLYR 250          
BLAST of EWM24477.1 vs. NCBI_GenBank
Match: gi|156356465|ref|XP_001623943.1| (predicted protein [Nematostella vectensis] >gi|156210688|gb|EDO31843.1| predicted protein [Nematostella vectensis])

HSP 1 Score: 256.529 bits (654), Expect = 6.742e-82
Identity = 132/222 (59.46%), Postives = 163/222 (73.42%), Query Frame = 0
Query:    1 MTHNEKRQHWLKEGAIGLGTGVLYGVTSVAVGHPFDTIKTKMQAQEGFIKGPGMVRSFSTVLKTQGLPGLYKGALPPLLGSGVYRSTQFAVFEALYTKWDN-EVGREEIPHTQGVQVRVVGAAVAAATARSLLECPIEFAKVARQTGQDWKLGQVYRGFGLQLGRTGGVMTTYFVTVDAIRRHHPSVFETK-IGQFLASAGAATFGFWVVWPLEVLKNQVTG 220
            MTHNEKR  WL+EG IGLG GVLYG TSVAVGHPFDTIKTKMQAQ GF K   M++SF   +KTQG+ GLY+G +PPL GSG+YRSTQFAVFEA YT   +     +EIP T G+Q+RVV A +  +T+R+++E P+E AKV RQTGQ W+   +Y+GFG+   RT G+MTTYF+ VD  RRH P  F+   +G FL S  AAT  +W+VWPLE +K+QV G
Sbjct:    1 MTHNEKRIGWLQEGMIGLGVGVLYGTTSVAVGHPFDTIKTKMQAQAGFEK-TSMIKSFIKTVKTQGIRGLYRGCVPPLWGSGIYRSTQFAVFEAAYTFLSHHRTCTKEIPFTGGLQLRVVLAGMLGSTSRAIIETPLELAKVRRQTGQSWQFRGLYKGFGVTWCRTMGLMTTYFILVDTGRRHFPEQFKRPLLGPFLTSGIAATLAWWIVWPLEYMKSQVQG 221          
The following BLAST results are available for this feature:
BLAST of EWM24477.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105947|gb|EWM24477.1|0.000e+0100.00Mitochondrial carrier domain protein [Nannochlorop... [more]
gi|553184811|ref|XP_005854150.1|2.649e-156100.00hypothetical protein NGA_0198700 [Nannochloropsis ... [more]
gi|919011054|ref|XP_013389954.1|4.598e-8959.28PREDICTED: mitochondrial arginine transporter BAC2... [more]
gi|1207976084|ref|XP_021378957.1|9.141e-8952.83protein dif-1-like [Mizuhopecten yessoensis] >gi|1... [more]
gi|240995037|ref|XP_002404567.1|1.186e-8760.18carnitine-acylcarnitine carrier protein, putative ... [more]
gi|1191070218|ref|XP_020913754.1|4.511e-8660.63mitochondrial substrate carrier family protein L-l... [more]
gi|1191070216|ref|XP_020913753.1|1.259e-8560.63mitochondrial ornithine transporter 2-like isoform... [more]
gi|1005455434|ref|XP_015764849.1|4.215e-8463.35PREDICTED: mitochondrial carnitine/acylcarnitine c... [more]
gi|340380117|ref|XP_003388570.1|1.671e-8253.75PREDICTED: mitochondrial substrate carrier family ... [more]
gi|156356465|ref|XP_001623943.1|6.742e-8259.46predicted protein [Nematostella vectensis] >gi|156... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6214rna6214Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications