EWM24524.1, cds6149 (CDS) Nannochloropsis gaditana

Overview
NameEWM24524.1
Unique Namecds6149
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:747215..747280 -
Alignment locationCM002467.1:746896..747025 -
Alignment locationCM002467.1:746527..746663 -
Alignment locationCM002467.1:746181..746330 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24524.1
Productfatty acid desaturase
Orig transcript idgnl|cribi|Naga_100545g1.4568.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:747215..747280 -
CM002467.1supercontigCM002467.1:746896..747025 -
CM002467.1supercontigCM002467.1:746527..746663 -
CM002467.1supercontigCM002467.1:746181..746330 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006629lipid metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR005804Fatty_acid_desaturase-1
Homology
BLAST of EWM24524.1 vs. NCBI_GenBank
Match: gi|585106029|gb|EWM24524.1| (fatty acid desaturase [Nannochloropsis gaditana])

HSP 1 Score: 336.265 bits (861), Expect = 5.654e-117
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0
Query:    1 MVEQTLPTLSQLKKAIPEKCFQKSLLRSVYYMLRDFAALAALYIIYPSVQANFGLAGLFVWWNLAGFFMWCLFVIGHDCGHGSFSEYKWFNDVCGHICHAPLMVPYWPWQKSHRLHHMYHNHLTKDMSHPWMTQEIFEVGRGGGREGGREGGRKGGRGEG 160
            MVEQTLPTLSQLKKAIPEKCFQKSLLRSVYYMLRDFAALAALYIIYPSVQANFGLAGLFVWWNLAGFFMWCLFVIGHDCGHGSFSEYKWFNDVCGHICHAPLMVPYWPWQKSHRLHHMYHNHLTKDMSHPWMTQEIFEVGRGGGREGGREGGRKGGRGEG
Sbjct:    1 MVEQTLPTLSQLKKAIPEKCFQKSLLRSVYYMLRDFAALAALYIIYPSVQANFGLAGLFVWWNLAGFFMWCLFVIGHDCGHGSFSEYKWFNDVCGHICHAPLMVPYWPWQKSHRLHHMYHNHLTKDMSHPWMTQEIFEVGRGGGREGGREGGRKGGRGEG 160          
BLAST of EWM24524.1 vs. NCBI_GenBank
Match: gi|1154501355|gb|AQX92138.1| (Om [Nannochloropsis oceanica])

HSP 1 Score: 283.493 bits (724), Expect = 1.417e-92
Identity = 126/138 (91.30%), Postives = 133/138 (96.38%), Query Frame = 0
Query:    1 MVEQTLPTLSQLKKAIPEKCFQKSLLRSVYYMLRDFAALAALYIIYPSVQANFGLAGLFVWWNLAGFFMWCLFVIGHDCGHGSFSEYKWFNDVCGHICHAPLMVPYWPWQKSHRLHHMYHNHLTKDMSHPWMTQEIFE 138
            MVEQTLPTLSQ+KKAIPEKCFQKSLLRS YYMLRDFAALAALY +YP+VQA +GL GLFVWWNLAGFFMWCLFVIGHDCGHGSFSEYKW ND+CGHICHAPLMVPYWPWQKSHRLHHMYHNHLTKDMSHPWMT+E+FE
Sbjct:    1 MVEQTLPTLSQIKKAIPEKCFQKSLLRSFYYMLRDFAALAALYFVYPTVQAKYGLPGLFVWWNLAGFFMWCLFVIGHDCGHGSFSEYKWLNDICGHICHAPLMVPYWPWQKSHRLHHMYHNHLTKDMSHPWMTKEVFE 138          
BLAST of EWM24524.1 vs. NCBI_GenBank
Match: gi|748396879|gb|KIH65868.1| (hypothetical protein ANCDUO_03809 [Ancylostoma duodenale])

HSP 1 Score: 171.785 bits (434), Expect = 2.096e-51
Identity = 74/133 (55.64%), Postives = 96/133 (72.18%), Query Frame = 0
Query:    6 LPTLSQLKKAIPEKCFQKSLLRSVYYMLRDFAALAALYIIYPSVQANFGLAGLFVWWNLAGFFMWCLFVIGHDCGHGSFSEYKWFNDVCGHICHAPLMVPYWPWQKSHRLHHMYHNHLTKDMSHPWMTQEIFE 138
            LPT+  ++KAIP  CF+K+LL+SV Y+++D   LA LY + P V+   G AG   W  + G     LFV+GHDCGHGSFS Y+W ND+CGHI HAP++ PYWPWQKSHR HH Y +HL KD  HPW+T+++FE
Sbjct:   54 LPTVDDVRKAIPPHCFEKNLLKSVRYLVQDLIVLACLYAVLPYVEQYLGWAGYLAWCCVFGICACSLFVVGHDCGHGSFSNYEWVNDLCGHIAHAPILAPYWPWQKSHRQHHQYTSHLDKDKGHPWVTEQVFE 186          
BLAST of EWM24524.1 vs. NCBI_GenBank
Match: gi|732889152|gb|KHJ93340.1| (hypothetical protein OESDEN_06753 [Oesophagostomum dentatum])

HSP 1 Score: 163.31 bits (412), Expect = 1.588e-48
Identity = 70/133 (52.63%), Postives = 97/133 (72.93%), Query Frame = 0
Query:    6 LPTLSQLKKAIPEKCFQKSLLRSVYYMLRDFAALAALYIIYPSVQANFGLAGLFVWWNLAGFFMWCLFVIGHDCGHGSFSEYKWFNDVCGHICHAPLMVPYWPWQKSHRLHHMYHNHLTKDMSHPWMTQEIFE 138
            LPT+ +++KA+P  CF+K+LL+S+ Y+++D+  LA LY+I P V+ + G  G   W    G     LFV+GHDCGHGSFSEY+W ND+CGHI HAP++ P+WPWQKSHR HH Y +HL KD  HPW+T++ + 
Sbjct:   11 LPTVDEVRKAVPAHCFEKNLLKSLRYLIQDYLILAFLYLILPYVEQHLGWVGYLAWCWAFGICGSALFVVGHDCGHGSFSEYEWVNDICGHIAHAPILAPFWPWQKSHRQHHQYTSHLEKDKGHPWVTEKDYN 143          
BLAST of EWM24524.1 vs. NCBI_GenBank
Match: gi|597864141|gb|EYC13543.1| (hypothetical protein Y032_0043g777 [Ancylostoma ceylanicum])

HSP 1 Score: 169.474 bits (428), Expect = 1.655e-48
Identity = 75/133 (56.39%), Postives = 95/133 (71.43%), Query Frame = 0
Query:    6 LPTLSQLKKAIPEKCFQKSLLRSVYYMLRDFAALAALYIIYPSVQANFGLAGLFVWWNLAGFFMWCLFVIGHDCGHGSFSEYKWFNDVCGHICHAPLMVPYWPWQKSHRLHHMYHNHLTKDMSHPWMTQEIFE 138
            LPT+  ++KAIP  CF+K+LL+SV Y+++D   LA LY I P V+   G AG   W  + G     LFV+GHDCGHGSFS Y+W ND+CGHI HAP++ PYWPWQKSHR HH Y +HL KD  HPW+T++ FE
Sbjct:   23 LPTVDDVRKAIPPHCFEKNLLKSVRYLVQDLIVLACLYAILPYVEQYLGWAGYLAWCCVFGICACSLFVVGHDCGHGSFSNYEWVNDLCGHIAHAPILAPYWPWQKSHRQHHQYTSHLDKDKGHPWVTEQDFE 155          
BLAST of EWM24524.1 vs. NCBI_GenBank
Match: gi|597864143|gb|EYC13545.1| (hypothetical protein Y032_0043g777 [Ancylostoma ceylanicum])

HSP 1 Score: 169.088 bits (427), Expect = 1.968e-48
Identity = 75/133 (56.39%), Postives = 95/133 (71.43%), Query Frame = 0
Query:    6 LPTLSQLKKAIPEKCFQKSLLRSVYYMLRDFAALAALYIIYPSVQANFGLAGLFVWWNLAGFFMWCLFVIGHDCGHGSFSEYKWFNDVCGHICHAPLMVPYWPWQKSHRLHHMYHNHLTKDMSHPWMTQEIFE 138
            LPT+  ++KAIP  CF+K+LL+SV Y+++D   LA LY I P V+   G AG   W  + G     LFV+GHDCGHGSFS Y+W ND+CGHI HAP++ PYWPWQKSHR HH Y +HL KD  HPW+T++ FE
Sbjct:   13 LPTVDDVRKAIPPHCFEKNLLKSVRYLVQDLIVLACLYAILPYVEQYLGWAGYLAWCCVFGICACSLFVVGHDCGHGSFSNYEWVNDLCGHIAHAPILAPYWPWQKSHRQHHQYTSHLDKDKGHPWVTEQDFE 145          
BLAST of EWM24524.1 vs. NCBI_GenBank
Match: gi|597864142|gb|EYC13544.1| (hypothetical protein Y032_0043g777 [Ancylostoma ceylanicum])

HSP 1 Score: 169.859 bits (429), Expect = 2.496e-48
Identity = 75/133 (56.39%), Postives = 95/133 (71.43%), Query Frame = 0
Query:    6 LPTLSQLKKAIPEKCFQKSLLRSVYYMLRDFAALAALYIIYPSVQANFGLAGLFVWWNLAGFFMWCLFVIGHDCGHGSFSEYKWFNDVCGHICHAPLMVPYWPWQKSHRLHHMYHNHLTKDMSHPWMTQEIFE 138
            LPT+  ++KAIP  CF+K+LL+SV Y+++D   LA LY I P V+   G AG   W  + G     LFV+GHDCGHGSFS Y+W ND+CGHI HAP++ PYWPWQKSHR HH Y +HL KD  HPW+T++ FE
Sbjct:   54 LPTVDDVRKAIPPHCFEKNLLKSVRYLVQDLIVLACLYAILPYVEQYLGWAGYLAWCCVFGICACSLFVVGHDCGHGSFSNYEWVNDLCGHIAHAPILAPYWPWQKSHRQHHQYTSHLDKDKGHPWVTEQDFE 186          
BLAST of EWM24524.1 vs. NCBI_GenBank
Match: gi|732882259|gb|KHJ90840.1| (stearoyl-CoA 9-desaturase [Oesophagostomum dentatum])

HSP 1 Score: 164.466 bits (415), Expect = 2.165e-47
Identity = 71/133 (53.38%), Postives = 97/133 (72.93%), Query Frame = 0
Query:    6 LPTLSQLKKAIPEKCFQKSLLRSVYYMLRDFAALAALYIIYPSVQANFGLAGLFVWWNLAGFFMWCLFVIGHDCGHGSFSEYKWFNDVCGHICHAPLMVPYWPWQKSHRLHHMYHNHLTKDMSHPWMTQEIFE 138
            LPT+ +++KA+P  CF+K+LL+S+ Y+++D+  LA LYII P V+ + G  G   W    G     LFV+GHDCGHGSFSEY+W ND+CGHI HAP++ P+WPWQKSHR HH Y +HL KD  HPW+T++ + 
Sbjct:   11 LPTVDEVRKAVPAHCFEKNLLKSLRYLIQDYLILAFLYIILPYVEQHLGWVGYLAWCWAFGICGSALFVVGHDCGHGSFSEYEWVNDICGHIAHAPILAPFWPWQKSHRQHHQYTSHLEKDKGHPWVTEKDYN 143          
BLAST of EWM24524.1 vs. NCBI_GenBank
Match: gi|541048972|gb|ERG87666.1| (omega-3 fatty acid endoplasmic reticulum [Ascaris suum])

HSP 1 Score: 160.614 bits (405), Expect = 3.533e-47
Identity = 71/132 (53.79%), Postives = 98/132 (74.24%), Query Frame = 0
Query:    6 LPTLSQLKKAIPEKCFQKSLLRSVYYMLRDFAALAALYIIYPSVQANFGLAGLFVWWNLAGFFMWCLFVIGHDCGHGSFSEYKWFNDVCGHICHAPLMVPYWPWQKSHRLHHMYHNHLTKDMSHPWMTQEIF 137
            LPT+  +++A+P +CF++SL +S+++++ D A LA+LY+   S   +FG+AGL +W+ L G F   LFV+GHDCGHG+FSEY   ND  GHI HAPL+ PYWPWQKSHR HH Y +H+ KD  HPW+T+E F
Sbjct:   19 LPTIDAIRRAVPAQCFERSLPKSLFFLVLDLAILASLYLAV-SYFEHFGIAGLLLWYWLMGMFGSSLFVVGHDCGHGTFSEYTIVNDFFGHIAHAPLLAPYWPWQKSHRQHHQYTSHIDKDKGHPWITEEEF 149          
BLAST of EWM24524.1 vs. NCBI_GenBank
Match: gi|915251322|ref|XP_013296756.1| (stearoyl-CoA 9-desaturase [Necator americanus] >gi|568281728|gb|ETN74529.1| stearoyl-CoA 9-desaturase [Necator americanus])

HSP 1 Score: 162.925 bits (411), Expect = 6.340e-46
Identity = 70/130 (53.85%), Postives = 91/130 (70.00%), Query Frame = 0
Query:    6 LPTLSQLKKAIPEKCFQKSLLRSVYYMLRDFAALAALYIIYPSVQANFGLAGLFVWWNLAGFFMWCLFVIGHDCGHGSFSEYKWFNDVCGHICHAPLMVPYWPWQKSHRLHHMYHNHLTKDMSHPWMTQE 135
            LPT+  ++K +P  CF+K L++S+ Y+++D   L  LY I P V+  FG  G   W    GF    LFV+GHDCGHGSFS+Y+W ND+CGHI HAPL+ PYWPWQKSHR HH Y +HL KD  HPW+T++
Sbjct:   23 LPTVDDVRKVVPPHCFEKKLVKSISYLVQDLIVLVGLYAILPYVEQYFGWVGYLAWCWAFGFCGCSLFVVGHDCGHGSFSDYEWVNDICGHIAHAPLLAPYWPWQKSHRQHHQYTSHLDKDKGHPWVTEK 152          
The following BLAST results are available for this feature:
BLAST of EWM24524.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106029|gb|EWM24524.1|5.654e-117100.00fatty acid desaturase [Nannochloropsis gaditana][more]
gi|1154501355|gb|AQX92138.1|1.417e-9291.30Om [Nannochloropsis oceanica][more]
gi|748396879|gb|KIH65868.1|2.096e-5155.64hypothetical protein ANCDUO_03809 [Ancylostoma duo... [more]
gi|732889152|gb|KHJ93340.1|1.588e-4852.63hypothetical protein OESDEN_06753 [Oesophagostomum... [more]
gi|597864141|gb|EYC13543.1|1.655e-4856.39hypothetical protein Y032_0043g777 [Ancylostoma ce... [more]
gi|597864143|gb|EYC13545.1|1.968e-4856.39hypothetical protein Y032_0043g777 [Ancylostoma ce... [more]
gi|597864142|gb|EYC13544.1|2.496e-4856.39hypothetical protein Y032_0043g777 [Ancylostoma ce... [more]
gi|732882259|gb|KHJ90840.1|2.165e-4753.38stearoyl-CoA 9-desaturase [Oesophagostomum dentatu... [more]
gi|541048972|gb|ERG87666.1|3.533e-4753.79omega-3 fatty acid endoplasmic reticulum [Ascaris ... [more]
gi|915251322|ref|XP_013296756.1|6.340e-4653.85stearoyl-CoA 9-desaturase [Necator americanus] >gi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6164rna6164Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications