EWM24525.1, cds6148 (CDS) Nannochloropsis gaditana

Overview
NameEWM24525.1
Unique Namecds6148
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:745554..745865 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24525.1
Productfatty acid desaturase
Orig transcript idgnl|cribi|Naga_102739g1.5806.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:745554..745865 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006629lipid metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM24525.1 vs. NCBI_GenBank
Match: gi|585106031|gb|EWM24525.1| (fatty acid desaturase [Nannochloropsis gaditana])

HSP 1 Score: 199.519 bits (506), Expect = 1.077e-64
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
Query:    1 MLVAGVLIYVGLEGGAEGGLARIGSMYLIPLLVFNAWITMVTYLQHHDEDTKVYAEGEWSYIKGALETIDREYGMGIDGEGGREGGREGGREGGREGARKRER 103
            MLVAGVLIYVGLEGGAEGGLARIGSMYLIPLLVFNAWITMVTYLQHHDEDTKVYAEGEWSYIKGALETIDREYGMGIDGEGGREGGREGGREGGREGARKRER
Sbjct:    1 MLVAGVLIYVGLEGGAEGGLARIGSMYLIPLLVFNAWITMVTYLQHHDEDTKVYAEGEWSYIKGALETIDREYGMGIDGEGGREGGREGGREGGREGARKRER 103          
BLAST of EWM24525.1 vs. NCBI_GenBank
Match: gi|1154501355|gb|AQX92138.1| (Om [Nannochloropsis oceanica])

HSP 1 Score: 158.303 bits (399), Expect = 8.589e-45
Identity = 68/78 (87.18%), Postives = 76/78 (97.44%), Query Frame = 0
Query:    1 MLVAGVLIYVGLEGGAEGGLARIGSMYLIPLLVFNAWITMVTYLQHHDEDTKVYAEGEWSYIKGALETIDREYGMGID 78
            M+VAG L+Y+GLEGG EGG+ARIGS+Y++PLLVFNAWITMVTYLQHHDEDTKVYAEGEW+YIKGALETIDREYGMGID
Sbjct:  196 MVVAGALVYIGLEGGKEGGMARIGSIYVVPLLVFNAWITMVTYLQHHDEDTKVYAEGEWNYIKGALETIDREYGMGID 273          
BLAST of EWM24525.1 vs. NCBI_GenBank
Match: gi|303288710|ref|XP_003063643.1| (predicted protein, partial [Micromonas pusilla CCMP1545] >gi|226454711|gb|EEH52016.1| predicted protein, partial [Micromonas pusilla CCMP1545])

HSP 1 Score: 87.0409 bits (214), Expect = 2.165e-18
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 0
Query:   19 GLARIGSMYLIPLLVFNAWITMVTYLQHHDEDTKVYAEGEWSYIKGALETIDREYGMGID 78
            G A+  + YL P L F+ W+  VTYLQHHD DTK Y EGEW Y+ G LETIDRE+G G+D
Sbjct:  218 GPAQWATQYLAPYLCFSWWLFTVTYLQHHDHDTKTYKEGEWEYVLGGLETIDREFGYGVD 277          
BLAST of EWM24525.1 vs. NCBI_GenBank
Match: gi|255087226|ref|XP_002505536.1| (predicted protein, partial [Micromonas commoda] >gi|226520806|gb|ACO66794.1| predicted protein, partial [Micromonas commoda])

HSP 1 Score: 78.1814 bits (191), Expect = 3.928e-15
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 0
Query:   15 GAEGGLARIGSMYLIPLLVFNAWITMVTYLQHHDEDTKVYAEGEWSYIKGALETIDREYGMGID 78
              +   A   + YL P L F+ W+  VTYLQHHD DT  Y EG+W Y+ G LETIDRE+G G+D
Sbjct:  211 ACDSNPAHWFAQYLAPYLCFSWWLFTVTYLQHHDYDTTTYEEGQWEYVLGGLETIDREFGHGVD 274          
BLAST of EWM24525.1 vs. NCBI_GenBank
Match: gi|802706924|gb|KKA71383.1| (fat-2 [Pristionchus pacificus])

HSP 1 Score: 73.9442 bits (180), Expect = 1.858e-13
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 0
Query:   18 GGLARIGSMYLIPLLVFNAWITMVTYLQHHDEDTKVYAEGEWSYIKGALETIDREYGMGID 78
            G  ++    Y+ P+L    W+TMVTYLQH  +D +VY +G W Y+KG L+TIDR YG GID
Sbjct:  168 GSFSQWVKFYVFPVLAQGFWLTMVTYLQHQTDDIQVYEDGTWGYVKGQLQTIDRPYGFGID 228          
BLAST of EWM24525.1 vs. NCBI_GenBank
Match: gi|802675401|gb|KKA68316.1| (hypothetical protein PRIPAC_12236, partial [Pristionchus pacificus])

HSP 1 Score: 73.9442 bits (180), Expect = 2.301e-13
Identity = 27/52 (51.92%), Postives = 39/52 (75.00%), Query Frame = 0
Query:   27 YLIPLLVFNAWITMVTYLQHHDEDTKVYAEGEWSYIKGALETIDREYGMGID 78
            Y++PL+  + W+ M+TYLQH  +D +VY +G W Y++G L+TIDR YG GID
Sbjct:  256 YVLPLIAHSFWLLMITYLQHQTDDIQVYEDGTWGYLRGQLQTIDRPYGFGID 307          
BLAST of EWM24525.1 vs. NCBI_GenBank
Match: gi|298709121|emb|CBJ31067.1| (Fatty acid desaturase [Ectocarpus siliculosus])

HSP 1 Score: 72.4034 bits (176), Expect = 6.982e-13
Identity = 26/52 (50.00%), Postives = 40/52 (76.92%), Query Frame = 0
Query:   27 YLIPLLVFNAWITMVTYLQHHDEDTKVYAEGEWSYIKGALETIDREYGMGID 78
            +L+P+++ N W+ MVTYLQHH+EDTK +   ++ +   A+ET+DR+YG GID
Sbjct:  210 HLVPVMIMNYWLVMVTYLQHHEEDTKTFDNSDFHFATAAMETVDRKYGWGID 261          
BLAST of EWM24525.1 vs. NCBI_GenBank
Match: gi|685836280|emb|CEF71200.1| (Fatty acid desaturase, type 1 domain-containing protein [Strongyloides ratti])

HSP 1 Score: 72.7886 bits (177), Expect = 7.032e-13
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 0
Query:   27 YLIPLLVFNAWITMVTYLQHHDEDTKVYAEGEWSYIKGALETIDREYGMGID 78
            Y IP L    W+ ++TYLQH  E  +VY EG W+Y+KG L+TIDR YG GID
Sbjct:  233 YYIPCLFQGFWLVIITYLQHQSETIEVYEEGSWNYVKGQLQTIDRTYGFGID 284          
BLAST of EWM24525.1 vs. NCBI_GenBank
Match: gi|1026950779|ref|XP_016613201.1| (hypothetical protein SPPG_00830 [Spizellomyces punctatus DAOM BR117] >gi|907099926|gb|KND05162.1| hypothetical protein SPPG_00830 [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 71.2478 bits (173), Expect = 1.978e-12
Identity = 26/47 (55.32%), Postives = 37/47 (78.72%), Query Frame = 0
Query:   27 YLIPLLVFNAWITMVTYLQHHDEDTKVYAEGEWSYIKGALETIDREY 73
            Y +P LV+NAW+ +VTYLQHH  +T+VY+   W++  GA+ET+DREY
Sbjct:  236 YAMPWLVYNAWLYIVTYLQHHTAETRVYSSASWTFTTGAVETVDREY 282          
BLAST of EWM24525.1 vs. NCBI_GenBank
Match: gi|1189393595|gb|OSX80488.1| (hypothetical protein BU14_0051s0008 [Porphyra umbilicalis])

HSP 1 Score: 70.0922 bits (170), Expect = 6.312e-12
Identity = 30/73 (41.10%), Postives = 44/73 (60.27%), Query Frame = 0
Query:    5 GVLIYVGLEGGA--EGGLARIGSMYLIPLLVFNAWITMVTYLQHHDEDTKVYAEGEWSYIKGALETIDREYGM 75
            G+L+  G  G A  E G   +   YLIP L  N W+ ++TYLQH D     Y  GEW++++GA+  +DR+YG+
Sbjct:  265 GLLLVFGAIGAAIKEWGFGAVARYYLIPYLFVNMWLVLITYLQHSDVRVPHYRNGEWTFVRGAVGAVDRDYGI 337          
The following BLAST results are available for this feature:
BLAST of EWM24525.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106031|gb|EWM24525.1|1.077e-64100.00fatty acid desaturase [Nannochloropsis gaditana][more]
gi|1154501355|gb|AQX92138.1|8.589e-4587.18Om [Nannochloropsis oceanica][more]
gi|303288710|ref|XP_003063643.1|2.165e-1860.00predicted protein, partial [Micromonas pusilla CCM... [more]
gi|255087226|ref|XP_002505536.1|3.928e-1551.56predicted protein, partial [Micromonas commoda] >g... [more]
gi|802706924|gb|KKA71383.1|1.858e-1350.82fat-2 [Pristionchus pacificus][more]
gi|802675401|gb|KKA68316.1|2.301e-1351.92hypothetical protein PRIPAC_12236, partial [Pristi... [more]
gi|298709121|emb|CBJ31067.1|6.982e-1350.00Fatty acid desaturase [Ectocarpus siliculosus][more]
gi|685836280|emb|CEF71200.1|7.032e-1355.77Fatty acid desaturase, type 1 domain-containing pr... [more]
gi|1026950779|ref|XP_016613201.1|1.978e-1255.32hypothetical protein SPPG_00830 [Spizellomyces pun... [more]
gi|1189393595|gb|OSX80488.1|6.312e-1241.10hypothetical protein BU14_0051s0008 [Porphyra umbi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6163rna6163Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications