EWM24525.1, cds6148 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24525.1 vs. NCBI_GenBank
Match: gi|585106031|gb|EWM24525.1| (fatty acid desaturase [Nannochloropsis gaditana]) HSP 1 Score: 199.519 bits (506), Expect = 1.077e-64 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
Query: 1 MLVAGVLIYVGLEGGAEGGLARIGSMYLIPLLVFNAWITMVTYLQHHDEDTKVYAEGEWSYIKGALETIDREYGMGIDGEGGREGGREGGREGGREGARKRER 103
MLVAGVLIYVGLEGGAEGGLARIGSMYLIPLLVFNAWITMVTYLQHHDEDTKVYAEGEWSYIKGALETIDREYGMGIDGEGGREGGREGGREGGREGARKRER
Sbjct: 1 MLVAGVLIYVGLEGGAEGGLARIGSMYLIPLLVFNAWITMVTYLQHHDEDTKVYAEGEWSYIKGALETIDREYGMGIDGEGGREGGREGGREGGREGARKRER 103
BLAST of EWM24525.1 vs. NCBI_GenBank
Match: gi|1154501355|gb|AQX92138.1| (Om [Nannochloropsis oceanica]) HSP 1 Score: 158.303 bits (399), Expect = 8.589e-45 Identity = 68/78 (87.18%), Postives = 76/78 (97.44%), Query Frame = 0
Query: 1 MLVAGVLIYVGLEGGAEGGLARIGSMYLIPLLVFNAWITMVTYLQHHDEDTKVYAEGEWSYIKGALETIDREYGMGID 78
M+VAG L+Y+GLEGG EGG+ARIGS+Y++PLLVFNAWITMVTYLQHHDEDTKVYAEGEW+YIKGALETIDREYGMGID
Sbjct: 196 MVVAGALVYIGLEGGKEGGMARIGSIYVVPLLVFNAWITMVTYLQHHDEDTKVYAEGEWNYIKGALETIDREYGMGID 273
BLAST of EWM24525.1 vs. NCBI_GenBank
Match: gi|303288710|ref|XP_003063643.1| (predicted protein, partial [Micromonas pusilla CCMP1545] >gi|226454711|gb|EEH52016.1| predicted protein, partial [Micromonas pusilla CCMP1545]) HSP 1 Score: 87.0409 bits (214), Expect = 2.165e-18 Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 0
Query: 19 GLARIGSMYLIPLLVFNAWITMVTYLQHHDEDTKVYAEGEWSYIKGALETIDREYGMGID 78
G A+ + YL P L F+ W+ VTYLQHHD DTK Y EGEW Y+ G LETIDRE+G G+D
Sbjct: 218 GPAQWATQYLAPYLCFSWWLFTVTYLQHHDHDTKTYKEGEWEYVLGGLETIDREFGYGVD 277
BLAST of EWM24525.1 vs. NCBI_GenBank
Match: gi|255087226|ref|XP_002505536.1| (predicted protein, partial [Micromonas commoda] >gi|226520806|gb|ACO66794.1| predicted protein, partial [Micromonas commoda]) HSP 1 Score: 78.1814 bits (191), Expect = 3.928e-15 Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 0
Query: 15 GAEGGLARIGSMYLIPLLVFNAWITMVTYLQHHDEDTKVYAEGEWSYIKGALETIDREYGMGID 78
+ A + YL P L F+ W+ VTYLQHHD DT Y EG+W Y+ G LETIDRE+G G+D
Sbjct: 211 ACDSNPAHWFAQYLAPYLCFSWWLFTVTYLQHHDYDTTTYEEGQWEYVLGGLETIDREFGHGVD 274
BLAST of EWM24525.1 vs. NCBI_GenBank
Match: gi|802706924|gb|KKA71383.1| (fat-2 [Pristionchus pacificus]) HSP 1 Score: 73.9442 bits (180), Expect = 1.858e-13 Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 0
Query: 18 GGLARIGSMYLIPLLVFNAWITMVTYLQHHDEDTKVYAEGEWSYIKGALETIDREYGMGID 78
G ++ Y+ P+L W+TMVTYLQH +D +VY +G W Y+KG L+TIDR YG GID
Sbjct: 168 GSFSQWVKFYVFPVLAQGFWLTMVTYLQHQTDDIQVYEDGTWGYVKGQLQTIDRPYGFGID 228
BLAST of EWM24525.1 vs. NCBI_GenBank
Match: gi|802675401|gb|KKA68316.1| (hypothetical protein PRIPAC_12236, partial [Pristionchus pacificus]) HSP 1 Score: 73.9442 bits (180), Expect = 2.301e-13 Identity = 27/52 (51.92%), Postives = 39/52 (75.00%), Query Frame = 0
Query: 27 YLIPLLVFNAWITMVTYLQHHDEDTKVYAEGEWSYIKGALETIDREYGMGID 78
Y++PL+ + W+ M+TYLQH +D +VY +G W Y++G L+TIDR YG GID
Sbjct: 256 YVLPLIAHSFWLLMITYLQHQTDDIQVYEDGTWGYLRGQLQTIDRPYGFGID 307
BLAST of EWM24525.1 vs. NCBI_GenBank
Match: gi|298709121|emb|CBJ31067.1| (Fatty acid desaturase [Ectocarpus siliculosus]) HSP 1 Score: 72.4034 bits (176), Expect = 6.982e-13 Identity = 26/52 (50.00%), Postives = 40/52 (76.92%), Query Frame = 0
Query: 27 YLIPLLVFNAWITMVTYLQHHDEDTKVYAEGEWSYIKGALETIDREYGMGID 78
+L+P+++ N W+ MVTYLQHH+EDTK + ++ + A+ET+DR+YG GID
Sbjct: 210 HLVPVMIMNYWLVMVTYLQHHEEDTKTFDNSDFHFATAAMETVDRKYGWGID 261
BLAST of EWM24525.1 vs. NCBI_GenBank
Match: gi|685836280|emb|CEF71200.1| (Fatty acid desaturase, type 1 domain-containing protein [Strongyloides ratti]) HSP 1 Score: 72.7886 bits (177), Expect = 7.032e-13 Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 0
Query: 27 YLIPLLVFNAWITMVTYLQHHDEDTKVYAEGEWSYIKGALETIDREYGMGID 78
Y IP L W+ ++TYLQH E +VY EG W+Y+KG L+TIDR YG GID
Sbjct: 233 YYIPCLFQGFWLVIITYLQHQSETIEVYEEGSWNYVKGQLQTIDRTYGFGID 284
BLAST of EWM24525.1 vs. NCBI_GenBank
Match: gi|1026950779|ref|XP_016613201.1| (hypothetical protein SPPG_00830 [Spizellomyces punctatus DAOM BR117] >gi|907099926|gb|KND05162.1| hypothetical protein SPPG_00830 [Spizellomyces punctatus DAOM BR117]) HSP 1 Score: 71.2478 bits (173), Expect = 1.978e-12 Identity = 26/47 (55.32%), Postives = 37/47 (78.72%), Query Frame = 0
Query: 27 YLIPLLVFNAWITMVTYLQHHDEDTKVYAEGEWSYIKGALETIDREY 73
Y +P LV+NAW+ +VTYLQHH +T+VY+ W++ GA+ET+DREY
Sbjct: 236 YAMPWLVYNAWLYIVTYLQHHTAETRVYSSASWTFTTGAVETVDREY 282
BLAST of EWM24525.1 vs. NCBI_GenBank
Match: gi|1189393595|gb|OSX80488.1| (hypothetical protein BU14_0051s0008 [Porphyra umbilicalis]) HSP 1 Score: 70.0922 bits (170), Expect = 6.312e-12 Identity = 30/73 (41.10%), Postives = 44/73 (60.27%), Query Frame = 0
Query: 5 GVLIYVGLEGGA--EGGLARIGSMYLIPLLVFNAWITMVTYLQHHDEDTKVYAEGEWSYIKGALETIDREYGM 75
G+L+ G G A E G + YLIP L N W+ ++TYLQH D Y GEW++++GA+ +DR+YG+
Sbjct: 265 GLLLVFGAIGAAIKEWGFGAVARYYLIPYLFVNMWLVLITYLQHSDVRVPHYRNGEWTFVRGAVGAVDRDYGI 337 The following BLAST results are available for this feature:
BLAST of EWM24525.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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