EWM24561.1, cds6115 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24561.1 vs. NCBI_GenBank
Match: gi|585106075|gb|EWM24561.1| (40s ribosomal protein s10 [Nannochloropsis gaditana]) HSP 1 Score: 528.48 bits (1360), Expect = 0.000e+0 Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0
Query: 1 MAGSSSASPSHHCSPFVVLASLPSTPDVVIAPTTTVTRSLVVFLKEASRQGAVHSLILLCASALSMSHLLSRPTFPVPIATLVTRSCEGGTSWHFLIIMFITKKNRLAVYHNLFKEGVLVAKKDNYSVWSYKSPEGDKDLALPNLEVVNLMKSLKSSGYVKETFNWQFTYYYLTAEGIEYLRQYLNLPQDVVPQTHSKKEGRPARPAGFGERGDRPEGERRPFDKEKRLGPDGSFAPSFGGGGFGRGGGGNREYRG 256
MAGSSSASPSHHCSPFVVLASLPSTPDVVIAPTTTVTRSLVVFLKEASRQGAVHSLILLCASALSMSHLLSRPTFPVPIATLVTRSCEGGTSWHFLIIMFITKKNRLAVYHNLFKEGVLVAKKDNYSVWSYKSPEGDKDLALPNLEVVNLMKSLKSSGYVKETFNWQFTYYYLTAEGIEYLRQYLNLPQDVVPQTHSKKEGRPARPAGFGERGDRPEGERRPFDKEKRLGPDGSFAPSFGGGGFGRGGGGNREYRG
Sbjct: 1 MAGSSSASPSHHCSPFVVLASLPSTPDVVIAPTTTVTRSLVVFLKEASRQGAVHSLILLCASALSMSHLLSRPTFPVPIATLVTRSCEGGTSWHFLIIMFITKKNRLAVYHNLFKEGVLVAKKDNYSVWSYKSPEGDKDLALPNLEVVNLMKSLKSSGYVKETFNWQFTYYYLTAEGIEYLRQYLNLPQDVVPQTHSKKEGRPARPAGFGERGDRPEGERRPFDKEKRLGPDGSFAPSFGGGGFGRGGGGNREYRG 256
BLAST of EWM24561.1 vs. NCBI_GenBank
Match: gi|695427798|ref|XP_009529785.1| (hypothetical protein PHYSODRAFT_286426 [Phytophthora sojae] >gi|348676218|gb|EGZ16036.1| hypothetical protein PHYSODRAFT_286426 [Phytophthora sojae]) HSP 1 Score: 144.436 bits (363), Expect = 4.935e-40 Identity = 80/150 (53.33%), Postives = 99/150 (66.00%), Query Frame = 0
Query: 99 MFITKKNRLAVYHNLFKEGVLVAKKDNYSVWSYKSPEGDKDLALPNLEVVNLMKSLKSSGYVKETFNWQFTYYYLTAEGIEYLRQYLNLPQDVVPQTHSKKEGRPARP-----AGFGERGDRPEGERRPFDKEKRLGPDGSFAPSFGGGG 243
M + K NR+AVY LFKEGV+VAKKD +S+ +++ E +PNL+V+ LM+SLKS GYVKETFNWQ+ Y+YLT EGIEYLR YL+LP ++VP T K+ RP RP GFG R FDKEK +GP G F P F GG
Sbjct: 1 MLVPKTNRIAVYSYLFKEGVMVAKKD-FSLPKHEAVE------VPNLQVIKLMQSLKSRGYVKETFNWQYFYWYLTNEGIEYLRSYLHLPAEIVPATLKKQAARPTRPQAPSAGGFG---------RGRFDKEKGVGPSGDFNPEFRRGG 134
BLAST of EWM24561.1 vs. NCBI_GenBank
Match: gi|675191547|ref|XP_008904658.1| (hypothetical protein PPTG_10908 [Phytophthora parasitica INRA-310] >gi|566025043|gb|ETI47954.1| hypothetical protein F443_07933 [Phytophthora parasitica P1569] >gi|567962327|gb|ETK87853.1| hypothetical protein L915_07763 [Phytophthora parasitica] >gi|567991055|gb|ETL41272.1| hypothetical protein L916_07693 [Phytophthora parasitica] >gi|568020296|gb|ETL94428.1| hypothetical protein L917_07578 [Phytophthora parasitica] >gi|568050728|gb|ETM47660.1| hypothetical protein L914_07657 [Phytophthora parasitica] >gi|568095453|gb|ETN10221.1| hypothetical protein PPTG_10908 [Phytophthora parasitica INRA-310] >gi|570328694|gb|ETO76642.1| hypothetical protein F444_07980 [Phytophthora parasitica P1976] >gi|570952467|gb|ETP17724.1| hypothetical protein F441_07906 [Phytophthora parasitica CJ01A1] >gi|570986823|gb|ETP45741.1| hypothetical protein F442_07874 [Phytophthora parasitica P10297] >gi|970663379|gb|KUG00569.1| 40S ribosomal protein S10 [Phytophthora nicotianae]) HSP 1 Score: 142.895 bits (359), Expect = 2.244e-39 Identity = 79/150 (52.67%), Postives = 99/150 (66.00%), Query Frame = 0
Query: 99 MFITKKNRLAVYHNLFKEGVLVAKKDNYSVWSYKSPEGDKDLALPNLEVVNLMKSLKSSGYVKETFNWQFTYYYLTAEGIEYLRQYLNLPQDVVPQTHSKKEGRPARP-----AGFGERGDRPEGERRPFDKEKRLGPDGSFAPSFGGGG 243
M + K NR+AVY LFKEGV+VAKKD +S+ +++ + +PNL+V+ LM+SLKS GYVKETFNWQ+ Y+YLT EGIEYLR YL+LP ++VP T K+ RP RP GFG R FDKEK +GP G F P F GG
Sbjct: 1 MLVPKTNRIAVYSYLFKEGVMVAKKD-FSLPKHEA------VDVPNLQVIKLMQSLKSRGYVKETFNWQWFYWYLTNEGIEYLRSYLHLPAEIVPATLKKQAARPTRPQAPSAGGFG---------RGRFDKEKGVGPSGDFNPEFRRGG 134
BLAST of EWM24561.1 vs. NCBI_GenBank
Match: gi|1214713018|gb|OWZ23929.1| (40S ribosomal protein S10 [Phytophthora megakarya]) HSP 1 Score: 142.51 bits (358), Expect = 2.528e-39 Identity = 79/150 (52.67%), Postives = 97/150 (64.67%), Query Frame = 0
Query: 99 MFITKKNRLAVYHNLFKEGVLVAKKDNYSVWSYKSPEGDKDLALPNLEVVNLMKSLKSSGYVKETFNWQFTYYYLTAEGIEYLRQYLNLPQDVVPQTHSKKEGRPARP-----AGFGERGDRPEGERRPFDKEKRLGPDGSFAPSFGGGG 243
M + K NR+AVY LFKEGV+VAKKD + P+ + + +PNL+V+ LM+SLKS GYVKETFNWQ+ Y+YLT EGIEYLR YL+LP ++VP T K+ RP RP GFG R FDKEK +GP G F P F GG
Sbjct: 1 MLVPKTNRIAVYSYLFKEGVMVAKKD------FALPKHEA-VDVPNLQVIKLMQSLKSRGYVKETFNWQWFYWYLTNEGIEYLRSYLHLPAEIVPATLKKQAARPTRPQAPSAGGFG---------RGRFDKEKGVGPSGDFNPEFRRGG 134
BLAST of EWM24561.1 vs. NCBI_GenBank
Match: gi|301122321|ref|XP_002908887.1| (40S ribosomal protein S10 [Phytophthora infestans T30-4] >gi|66270167|gb|AAY43413.1| ribosomal protein S10 [Phytophthora infestans] >gi|262099649|gb|EEY57701.1| 40S ribosomal protein S10 [Phytophthora infestans T30-4]) HSP 1 Score: 142.51 bits (358), Expect = 2.697e-39 Identity = 79/150 (52.67%), Postives = 97/150 (64.67%), Query Frame = 0
Query: 99 MFITKKNRLAVYHNLFKEGVLVAKKDNYSVWSYKSPEGDKDLALPNLEVVNLMKSLKSSGYVKETFNWQFTYYYLTAEGIEYLRQYLNLPQDVVPQTHSKKEGRPARP-----AGFGERGDRPEGERRPFDKEKRLGPDGSFAPSFGGGG 243
M + K NR+AVY LFKEGV+VAKKD + P+ + + +PNL+V+ LM+SLKS GYVKETFNWQ+ Y+YLT EGIEYLR YL+LP ++VP T K+ RP RP GFG R FDKEK +GP G F P F GG
Sbjct: 1 MLVPKTNRIAVYSYLFKEGVMVAKKD------FSLPKHEA-VDVPNLQVIKLMQSLKSRGYVKETFNWQWFYWYLTNEGIEYLRSYLHLPAEIVPATLKKQAARPTRPQAPSAGGFG---------RGRFDKEKGVGPSGDFNPEFRRGG 134
BLAST of EWM24561.1 vs. NCBI_GenBank
Match: gi|953488282|emb|CEG47766.1| (40s ribosomal protein s10 [Plasmopara halstedii]) HSP 1 Score: 138.658 bits (348), Expect = 8.212e-38 Identity = 79/156 (50.64%), Postives = 101/156 (64.74%), Query Frame = 0
Query: 99 MFITKKNRLAVYHNLFKEGVLVAKKDNYSVWSYKSPEGDKDLALPNLEVVNLMKSLKSSGYVKETFNWQFTYYYLTAEGIEYLRQYLNLPQDVVPQTHSKKEGRPARP-----AGFGERGDRPEGERRPFDKEKRLGPDGSFAPSF---GGGGFGR 246
M + K NR+AVY LFKEGV+VAKKD +S+ +++ + +PNL+V+ LM+SLKS GYVKETFNWQ+ Y+YLT EGIEYLR YL+LP ++VP T K+ RP RP GFG R FDK+K +GP G F P F G G+ R
Sbjct: 1 MLVPKANRIAVYSYLFKEGVMVAKKD-FSLPKHQA------VDVPNLQVIKLMQSLKSRGYVKETFNWQWFYWYLTNEGIEYLRCYLHLPAEIVPATLKKQAARPTRPQAPPTGGFG---------RGRFDKDKGVGPSGDFNPEFLRTGQDGYRR 140
BLAST of EWM24561.1 vs. NCBI_GenBank
Match: gi|673047301|ref|XP_008877611.1| (hypothetical protein H310_12365 [Aphanomyces invadans] >gi|574466775|gb|ETV93802.1| hypothetical protein H310_12365 [Aphanomyces invadans]) HSP 1 Score: 138.658 bits (348), Expect = 9.657e-38 Identity = 78/148 (52.70%), Postives = 95/148 (64.19%), Query Frame = 0
Query: 99 MFITKKNRLAVYHNLFKEGVLVAKKDNYSVWSYKSPEGDKDLALPNLEVVNLMKSLKSSGYVKETFNWQFTYYYLTAEGIEYLRQYLNLPQDVVPQTHSKKEGRPARP-----AGFGERGDRPEGERRPFDKEKRLGPDGSFAPSFGG 241
M + KKNR+AVY LFKEGV+V KKD ++ GD D+ PNL+V+ LM+SL S GYVKETFNWQ+ Y+YLTAEGIEYLR YL+LP ++VP T K+ RP RP G+G RG K+K LGP G F P F G
Sbjct: 1 MLVPKKNRIAVYSYLFKEGVMVGKKDFFA-----PKHGDVDV--PNLQVIKLMQSLHSRGYVKETFNWQWYYWYLTAEGIEYLRAYLHLPTEIVPATLKKQAARPQRPQAPSAGGYG-RG-----------KDKNLGPSGDFNPEFRG 129
BLAST of EWM24561.1 vs. NCBI_GenBank
Match: gi|698823187|ref|XP_009844622.1| (hypothetical protein H257_17507 [Aphanomyces astaci] >gi|574100286|gb|ETV65869.1| hypothetical protein H257_17507 [Aphanomyces astaci]) HSP 1 Score: 137.502 bits (345), Expect = 2.614e-37 Identity = 75/143 (52.45%), Postives = 92/143 (64.34%), Query Frame = 0
Query: 99 MFITKKNRLAVYHNLFKEGVLVAKKDNYSVWSYKSPEGDKDLALPNLEVVNLMKSLKSSGYVKETFNWQFTYYYLTAEGIEYLRQYLNLPQDVVPQTHSKKEGRPARPAGFGERGDRPEGERRPFDKEKRLGPDGSFAPSFGG 241
M + KKNR+AVY LFKEGV+V KKD ++ GD D+ PNL+V+ L++SL S GYVKETFNWQ+ Y+YLTAEGIEYLR YL+LP ++VP T K+ RP RP G G K+K LGP G F P F G
Sbjct: 1 MLVPKKNRIAVYSYLFKEGVMVGKKDFFA-----PKHGDVDV--PNLQVIKLLQSLHSRGYVKETFNWQWYYWYLTAEGIEYLRAYLHLPTEIVPATLKKQAARPQRPQAPTGAGGYGRG------KDKNLGPSGDFNPEFRG 130
BLAST of EWM24561.1 vs. NCBI_GenBank
Match: gi|298714391|emb|CBJ27448.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 137.502 bits (345), Expect = 4.081e-37 Identity = 79/149 (53.02%), Postives = 97/149 (65.10%), Query Frame = 0
Query: 99 MFITKKNRLAVYHNLFKEGVLVAKKDNYSVWSYKSPEGDKDLALPNLEVVNLMKSLKSSGYVKETFNWQFTYYYLTAEGIEYLRQYLNLPQDVVPQTHSKKEGRPARPA----GFGERGDRPEGERRPFDKEKRLGPDGSFAPSFGGGG 243
MFI KKNRLAVY LFKEGVLVAKKD + + D+ +PNLEV+ LMKS+KS G V+ETFNWQ+ Y+YLT EGIEYLR+YL+LP+++VP T K RPARP G + G G +K++GP G F P F GG
Sbjct: 1 MFILKKNRLAVYSYLFKEGVLVAKKDFFKA------KHDEIEDVPNLEVLALMKSMKSRGLVRETFNWQYFYWYLTVEGIEYLREYLHLPEEIVPATLKKSASRPARPGPAPGGDRDGGRGGYGGGGDRFGDKKMGPGGDFNPEFQRGG 143
BLAST of EWM24561.1 vs. NCBI_GenBank
Match: gi|646387862|gb|KDQ52763.1| (hypothetical protein JAAARDRAFT_40040 [Jaapia argillacea MUCL 33604]) HSP 1 Score: 136.732 bits (343), Expect = 5.413e-37 Identity = 76/152 (50.00%), Postives = 98/152 (64.47%), Query Frame = 0
Query: 99 MFITKKNRLAVYHNLFKEGVLVAKKDNYSVWSYKSPEGDKDLALPNLEVVNLMKSLKSSGYVKETFNWQFTYYYLTAEGIEYLRQYLNLPQDVVPQTHSKKEGRPARPAGFGERGDR-----PEGERRPFDKEKRLGPDGSFAPSFGGGGFG 245
M I+K+NR +Y NLFKEGVLVAKKD Y +P+ + +L +PNLEV+ M+SL S G+VK F+WQ+ YY LT EG+EYLR++L+LP ++VPQTH KK RP RPAG + G P G+R D K+ G F P F G G G
Sbjct: 1 MIISKQNRRLIYENLFKEGVLVAKKD------YNAPKHE-ELEMPNLEVIKAMQSLTSKGFVKTQFSWQWYYYTLTPEGVEYLREWLHLPNEIVPQTH-KKAARPPRPAGVRQGGGEGTYRPPRGDRE--DYRKKESAPGEFRPQFAGVGRG 142 The following BLAST results are available for this feature:
BLAST of EWM24561.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|