EWM24561.1, cds6115 (CDS) Nannochloropsis gaditana

Overview
NameEWM24561.1
Unique Namecds6115
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:654096..654392 +
Alignment locationCM002467.1:654527..654575 +
Alignment locationCM002467.1:654747..654897 +
Alignment locationCM002467.1:655149..655422 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24561.1
Product40s ribosomal protein s10
Orig transcript idgnl|cribi|Naga_100140g4.4485.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:654096..654392 +
CM002467.1supercontigCM002467.1:654527..654575 +
CM002467.1supercontigCM002467.1:654747..654897 +
CM002467.1supercontigCM002467.1:655149..655422 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR005326S10_plectin_N
Homology
BLAST of EWM24561.1 vs. NCBI_GenBank
Match: gi|585106075|gb|EWM24561.1| (40s ribosomal protein s10 [Nannochloropsis gaditana])

HSP 1 Score: 528.48 bits (1360), Expect = 0.000e+0
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0
Query:    1 MAGSSSASPSHHCSPFVVLASLPSTPDVVIAPTTTVTRSLVVFLKEASRQGAVHSLILLCASALSMSHLLSRPTFPVPIATLVTRSCEGGTSWHFLIIMFITKKNRLAVYHNLFKEGVLVAKKDNYSVWSYKSPEGDKDLALPNLEVVNLMKSLKSSGYVKETFNWQFTYYYLTAEGIEYLRQYLNLPQDVVPQTHSKKEGRPARPAGFGERGDRPEGERRPFDKEKRLGPDGSFAPSFGGGGFGRGGGGNREYRG 256
            MAGSSSASPSHHCSPFVVLASLPSTPDVVIAPTTTVTRSLVVFLKEASRQGAVHSLILLCASALSMSHLLSRPTFPVPIATLVTRSCEGGTSWHFLIIMFITKKNRLAVYHNLFKEGVLVAKKDNYSVWSYKSPEGDKDLALPNLEVVNLMKSLKSSGYVKETFNWQFTYYYLTAEGIEYLRQYLNLPQDVVPQTHSKKEGRPARPAGFGERGDRPEGERRPFDKEKRLGPDGSFAPSFGGGGFGRGGGGNREYRG
Sbjct:    1 MAGSSSASPSHHCSPFVVLASLPSTPDVVIAPTTTVTRSLVVFLKEASRQGAVHSLILLCASALSMSHLLSRPTFPVPIATLVTRSCEGGTSWHFLIIMFITKKNRLAVYHNLFKEGVLVAKKDNYSVWSYKSPEGDKDLALPNLEVVNLMKSLKSSGYVKETFNWQFTYYYLTAEGIEYLRQYLNLPQDVVPQTHSKKEGRPARPAGFGERGDRPEGERRPFDKEKRLGPDGSFAPSFGGGGFGRGGGGNREYRG 256          
BLAST of EWM24561.1 vs. NCBI_GenBank
Match: gi|695427798|ref|XP_009529785.1| (hypothetical protein PHYSODRAFT_286426 [Phytophthora sojae] >gi|348676218|gb|EGZ16036.1| hypothetical protein PHYSODRAFT_286426 [Phytophthora sojae])

HSP 1 Score: 144.436 bits (363), Expect = 4.935e-40
Identity = 80/150 (53.33%), Postives = 99/150 (66.00%), Query Frame = 0
Query:   99 MFITKKNRLAVYHNLFKEGVLVAKKDNYSVWSYKSPEGDKDLALPNLEVVNLMKSLKSSGYVKETFNWQFTYYYLTAEGIEYLRQYLNLPQDVVPQTHSKKEGRPARP-----AGFGERGDRPEGERRPFDKEKRLGPDGSFAPSFGGGG 243
            M + K NR+AVY  LFKEGV+VAKKD +S+  +++ E      +PNL+V+ LM+SLKS GYVKETFNWQ+ Y+YLT EGIEYLR YL+LP ++VP T  K+  RP RP      GFG         R  FDKEK +GP G F P F  GG
Sbjct:    1 MLVPKTNRIAVYSYLFKEGVMVAKKD-FSLPKHEAVE------VPNLQVIKLMQSLKSRGYVKETFNWQYFYWYLTNEGIEYLRSYLHLPAEIVPATLKKQAARPTRPQAPSAGGFG---------RGRFDKEKGVGPSGDFNPEFRRGG 134          
BLAST of EWM24561.1 vs. NCBI_GenBank
Match: gi|675191547|ref|XP_008904658.1| (hypothetical protein PPTG_10908 [Phytophthora parasitica INRA-310] >gi|566025043|gb|ETI47954.1| hypothetical protein F443_07933 [Phytophthora parasitica P1569] >gi|567962327|gb|ETK87853.1| hypothetical protein L915_07763 [Phytophthora parasitica] >gi|567991055|gb|ETL41272.1| hypothetical protein L916_07693 [Phytophthora parasitica] >gi|568020296|gb|ETL94428.1| hypothetical protein L917_07578 [Phytophthora parasitica] >gi|568050728|gb|ETM47660.1| hypothetical protein L914_07657 [Phytophthora parasitica] >gi|568095453|gb|ETN10221.1| hypothetical protein PPTG_10908 [Phytophthora parasitica INRA-310] >gi|570328694|gb|ETO76642.1| hypothetical protein F444_07980 [Phytophthora parasitica P1976] >gi|570952467|gb|ETP17724.1| hypothetical protein F441_07906 [Phytophthora parasitica CJ01A1] >gi|570986823|gb|ETP45741.1| hypothetical protein F442_07874 [Phytophthora parasitica P10297] >gi|970663379|gb|KUG00569.1| 40S ribosomal protein S10 [Phytophthora nicotianae])

HSP 1 Score: 142.895 bits (359), Expect = 2.244e-39
Identity = 79/150 (52.67%), Postives = 99/150 (66.00%), Query Frame = 0
Query:   99 MFITKKNRLAVYHNLFKEGVLVAKKDNYSVWSYKSPEGDKDLALPNLEVVNLMKSLKSSGYVKETFNWQFTYYYLTAEGIEYLRQYLNLPQDVVPQTHSKKEGRPARP-----AGFGERGDRPEGERRPFDKEKRLGPDGSFAPSFGGGG 243
            M + K NR+AVY  LFKEGV+VAKKD +S+  +++      + +PNL+V+ LM+SLKS GYVKETFNWQ+ Y+YLT EGIEYLR YL+LP ++VP T  K+  RP RP      GFG         R  FDKEK +GP G F P F  GG
Sbjct:    1 MLVPKTNRIAVYSYLFKEGVMVAKKD-FSLPKHEA------VDVPNLQVIKLMQSLKSRGYVKETFNWQWFYWYLTNEGIEYLRSYLHLPAEIVPATLKKQAARPTRPQAPSAGGFG---------RGRFDKEKGVGPSGDFNPEFRRGG 134          
BLAST of EWM24561.1 vs. NCBI_GenBank
Match: gi|1214713018|gb|OWZ23929.1| (40S ribosomal protein S10 [Phytophthora megakarya])

HSP 1 Score: 142.51 bits (358), Expect = 2.528e-39
Identity = 79/150 (52.67%), Postives = 97/150 (64.67%), Query Frame = 0
Query:   99 MFITKKNRLAVYHNLFKEGVLVAKKDNYSVWSYKSPEGDKDLALPNLEVVNLMKSLKSSGYVKETFNWQFTYYYLTAEGIEYLRQYLNLPQDVVPQTHSKKEGRPARP-----AGFGERGDRPEGERRPFDKEKRLGPDGSFAPSFGGGG 243
            M + K NR+AVY  LFKEGV+VAKKD      +  P+ +  + +PNL+V+ LM+SLKS GYVKETFNWQ+ Y+YLT EGIEYLR YL+LP ++VP T  K+  RP RP      GFG         R  FDKEK +GP G F P F  GG
Sbjct:    1 MLVPKTNRIAVYSYLFKEGVMVAKKD------FALPKHEA-VDVPNLQVIKLMQSLKSRGYVKETFNWQWFYWYLTNEGIEYLRSYLHLPAEIVPATLKKQAARPTRPQAPSAGGFG---------RGRFDKEKGVGPSGDFNPEFRRGG 134          
BLAST of EWM24561.1 vs. NCBI_GenBank
Match: gi|301122321|ref|XP_002908887.1| (40S ribosomal protein S10 [Phytophthora infestans T30-4] >gi|66270167|gb|AAY43413.1| ribosomal protein S10 [Phytophthora infestans] >gi|262099649|gb|EEY57701.1| 40S ribosomal protein S10 [Phytophthora infestans T30-4])

HSP 1 Score: 142.51 bits (358), Expect = 2.697e-39
Identity = 79/150 (52.67%), Postives = 97/150 (64.67%), Query Frame = 0
Query:   99 MFITKKNRLAVYHNLFKEGVLVAKKDNYSVWSYKSPEGDKDLALPNLEVVNLMKSLKSSGYVKETFNWQFTYYYLTAEGIEYLRQYLNLPQDVVPQTHSKKEGRPARP-----AGFGERGDRPEGERRPFDKEKRLGPDGSFAPSFGGGG 243
            M + K NR+AVY  LFKEGV+VAKKD      +  P+ +  + +PNL+V+ LM+SLKS GYVKETFNWQ+ Y+YLT EGIEYLR YL+LP ++VP T  K+  RP RP      GFG         R  FDKEK +GP G F P F  GG
Sbjct:    1 MLVPKTNRIAVYSYLFKEGVMVAKKD------FSLPKHEA-VDVPNLQVIKLMQSLKSRGYVKETFNWQWFYWYLTNEGIEYLRSYLHLPAEIVPATLKKQAARPTRPQAPSAGGFG---------RGRFDKEKGVGPSGDFNPEFRRGG 134          
BLAST of EWM24561.1 vs. NCBI_GenBank
Match: gi|953488282|emb|CEG47766.1| (40s ribosomal protein s10 [Plasmopara halstedii])

HSP 1 Score: 138.658 bits (348), Expect = 8.212e-38
Identity = 79/156 (50.64%), Postives = 101/156 (64.74%), Query Frame = 0
Query:   99 MFITKKNRLAVYHNLFKEGVLVAKKDNYSVWSYKSPEGDKDLALPNLEVVNLMKSLKSSGYVKETFNWQFTYYYLTAEGIEYLRQYLNLPQDVVPQTHSKKEGRPARP-----AGFGERGDRPEGERRPFDKEKRLGPDGSFAPSF---GGGGFGR 246
            M + K NR+AVY  LFKEGV+VAKKD +S+  +++      + +PNL+V+ LM+SLKS GYVKETFNWQ+ Y+YLT EGIEYLR YL+LP ++VP T  K+  RP RP      GFG         R  FDK+K +GP G F P F   G  G+ R
Sbjct:    1 MLVPKANRIAVYSYLFKEGVMVAKKD-FSLPKHQA------VDVPNLQVIKLMQSLKSRGYVKETFNWQWFYWYLTNEGIEYLRCYLHLPAEIVPATLKKQAARPTRPQAPPTGGFG---------RGRFDKDKGVGPSGDFNPEFLRTGQDGYRR 140          
BLAST of EWM24561.1 vs. NCBI_GenBank
Match: gi|673047301|ref|XP_008877611.1| (hypothetical protein H310_12365 [Aphanomyces invadans] >gi|574466775|gb|ETV93802.1| hypothetical protein H310_12365 [Aphanomyces invadans])

HSP 1 Score: 138.658 bits (348), Expect = 9.657e-38
Identity = 78/148 (52.70%), Postives = 95/148 (64.19%), Query Frame = 0
Query:   99 MFITKKNRLAVYHNLFKEGVLVAKKDNYSVWSYKSPEGDKDLALPNLEVVNLMKSLKSSGYVKETFNWQFTYYYLTAEGIEYLRQYLNLPQDVVPQTHSKKEGRPARP-----AGFGERGDRPEGERRPFDKEKRLGPDGSFAPSFGG 241
            M + KKNR+AVY  LFKEGV+V KKD ++        GD D+  PNL+V+ LM+SL S GYVKETFNWQ+ Y+YLTAEGIEYLR YL+LP ++VP T  K+  RP RP      G+G RG           K+K LGP G F P F G
Sbjct:    1 MLVPKKNRIAVYSYLFKEGVMVGKKDFFA-----PKHGDVDV--PNLQVIKLMQSLHSRGYVKETFNWQWYYWYLTAEGIEYLRAYLHLPTEIVPATLKKQAARPQRPQAPSAGGYG-RG-----------KDKNLGPSGDFNPEFRG 129          
BLAST of EWM24561.1 vs. NCBI_GenBank
Match: gi|698823187|ref|XP_009844622.1| (hypothetical protein H257_17507 [Aphanomyces astaci] >gi|574100286|gb|ETV65869.1| hypothetical protein H257_17507 [Aphanomyces astaci])

HSP 1 Score: 137.502 bits (345), Expect = 2.614e-37
Identity = 75/143 (52.45%), Postives = 92/143 (64.34%), Query Frame = 0
Query:   99 MFITKKNRLAVYHNLFKEGVLVAKKDNYSVWSYKSPEGDKDLALPNLEVVNLMKSLKSSGYVKETFNWQFTYYYLTAEGIEYLRQYLNLPQDVVPQTHSKKEGRPARPAGFGERGDRPEGERRPFDKEKRLGPDGSFAPSFGG 241
            M + KKNR+AVY  LFKEGV+V KKD ++        GD D+  PNL+V+ L++SL S GYVKETFNWQ+ Y+YLTAEGIEYLR YL+LP ++VP T  K+  RP RP      G    G      K+K LGP G F P F G
Sbjct:    1 MLVPKKNRIAVYSYLFKEGVMVGKKDFFA-----PKHGDVDV--PNLQVIKLLQSLHSRGYVKETFNWQWYYWYLTAEGIEYLRAYLHLPTEIVPATLKKQAARPQRPQAPTGAGGYGRG------KDKNLGPSGDFNPEFRG 130          
BLAST of EWM24561.1 vs. NCBI_GenBank
Match: gi|298714391|emb|CBJ27448.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 137.502 bits (345), Expect = 4.081e-37
Identity = 79/149 (53.02%), Postives = 97/149 (65.10%), Query Frame = 0
Query:   99 MFITKKNRLAVYHNLFKEGVLVAKKDNYSVWSYKSPEGDKDLALPNLEVVNLMKSLKSSGYVKETFNWQFTYYYLTAEGIEYLRQYLNLPQDVVPQTHSKKEGRPARPA----GFGERGDRPEGERRPFDKEKRLGPDGSFAPSFGGGG 243
            MFI KKNRLAVY  LFKEGVLVAKKD +        + D+   +PNLEV+ LMKS+KS G V+ETFNWQ+ Y+YLT EGIEYLR+YL+LP+++VP T  K   RPARP     G  + G    G       +K++GP G F P F  GG
Sbjct:    1 MFILKKNRLAVYSYLFKEGVLVAKKDFFKA------KHDEIEDVPNLEVLALMKSMKSRGLVRETFNWQYFYWYLTVEGIEYLREYLHLPEEIVPATLKKSASRPARPGPAPGGDRDGGRGGYGGGGDRFGDKKMGPGGDFNPEFQRGG 143          
BLAST of EWM24561.1 vs. NCBI_GenBank
Match: gi|646387862|gb|KDQ52763.1| (hypothetical protein JAAARDRAFT_40040 [Jaapia argillacea MUCL 33604])

HSP 1 Score: 136.732 bits (343), Expect = 5.413e-37
Identity = 76/152 (50.00%), Postives = 98/152 (64.47%), Query Frame = 0
Query:   99 MFITKKNRLAVYHNLFKEGVLVAKKDNYSVWSYKSPEGDKDLALPNLEVVNLMKSLKSSGYVKETFNWQFTYYYLTAEGIEYLRQYLNLPQDVVPQTHSKKEGRPARPAGFGERGDR-----PEGERRPFDKEKRLGPDGSFAPSFGGGGFG 245
            M I+K+NR  +Y NLFKEGVLVAKKD      Y +P+ + +L +PNLEV+  M+SL S G+VK  F+WQ+ YY LT EG+EYLR++L+LP ++VPQTH KK  RP RPAG  + G       P G+R   D  K+    G F P F G G G
Sbjct:    1 MIISKQNRRLIYENLFKEGVLVAKKD------YNAPKHE-ELEMPNLEVIKAMQSLTSKGFVKTQFSWQWYYYTLTPEGVEYLREWLHLPNEIVPQTH-KKAARPPRPAGVRQGGGEGTYRPPRGDRE--DYRKKESAPGEFRPQFAGVGRG 142          
The following BLAST results are available for this feature:
BLAST of EWM24561.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106075|gb|EWM24561.1|0.000e+0100.0040s ribosomal protein s10 [Nannochloropsis gaditan... [more]
gi|695427798|ref|XP_009529785.1|4.935e-4053.33hypothetical protein PHYSODRAFT_286426 [Phytophtho... [more]
gi|675191547|ref|XP_008904658.1|2.244e-3952.67hypothetical protein PPTG_10908 [Phytophthora para... [more]
gi|1214713018|gb|OWZ23929.1|2.528e-3952.6740S ribosomal protein S10 [Phytophthora megakarya][more]
gi|301122321|ref|XP_002908887.1|2.697e-3952.6740S ribosomal protein S10 [Phytophthora infestans ... [more]
gi|953488282|emb|CEG47766.1|8.212e-3850.6440s ribosomal protein s10 [Plasmopara halstedii][more]
gi|673047301|ref|XP_008877611.1|9.657e-3852.70hypothetical protein H310_12365 [Aphanomyces invad... [more]
gi|698823187|ref|XP_009844622.1|2.614e-3752.45hypothetical protein H257_17507 [Aphanomyces astac... [more]
gi|298714391|emb|CBJ27448.1|4.081e-3753.02conserved unknown protein [Ectocarpus siliculosus][more]
gi|646387862|gb|KDQ52763.1|5.413e-3750.00hypothetical protein JAAARDRAFT_40040 [Jaapia argi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6130rna6130Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications