EWM24557.1, cds6108 (CDS) Nannochloropsis gaditana

Overview
NameEWM24557.1
Unique Namecds6108
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:627216..627692 -
Alignment locationCM002467.1:626530..626848 -
Alignment locationCM002467.1:624994..626228 -
Alignment locationCM002467.1:624777..624857 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24557.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100140g13.4481.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:627216..627692 -
CM002467.1supercontigCM002467.1:626530..626848 -
CM002467.1supercontigCM002467.1:624994..626228 -
CM002467.1supercontigCM002467.1:624777..624857 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM24557.1 vs. NCBI_GenBank
Match: gi|585106071|gb|EWM24557.1| (hypothetical protein Naga_100140g13 [Nannochloropsis gaditana])

HSP 1 Score: 1368.99 bits (3542), Expect = 0.000e+0
Identity = 703/703 (100.00%), Postives = 703/703 (100.00%), Query Frame = 0 
Query:    1 MPRAVRGVAGEGATSGRDQAPASWQEDSSSRLASPSLSLASTDLKASQQLMAMLKLGGGPKDGGIQASEEGGKAMLDDERAGSLQPPVAASPSRLRSRHGGQEKRVPPKGRFGKIRYSVEELEALKERVKPLASRPTGLPPLVISSRDRTGLPHAGDQAASSEREKGQAQREEDLWENPTDDYWEMPSAGGLGGGGGKETGMSGLDKAFVPDEGLAAAFEAERAKYLRSQGIQASVRKPPGRSGREAPAEAEEEEEPAWAQEASAGFSTIDVYRDLASSSSVTYREGAGPARTKDSQGLQTGNTSSVIKPPSAAAAVATASSFPTSQVPPPARSHSPPETPLARPSPGMEASLRQAPSAPGQGPVVPGEGPTPPGPYRQGLPSPSLPPPGLAPFGRDSTLPLPVTRPQSRPSQAPPPPPAQNGARSAPVSAVDLSAMLFKPQAGGHPARPSPSRMAPSPVTFPPGPQQPLPLPPSSQHHRSSQPRPQAPRSHPFQEQHSQYPAHPPPRQVQQQQQPQPQQQPQQQQPQQQPQPQPQQQQQQPQQPQPQPPQQQQQQQGHHPSNLSAPRESSTLPPGDLMAILGFGAQGPDEASHARHAPQTKAETASSTPVPASKFAFHQGPTKRVLKRKPPGLNAKTLALTRGVIPSSVLISSAGKKKTESRTQVTGSPAPNPMAEECRSMTKLGKKNSPSATLGVKCSQNA 703
            MPRAVRGVAGEGATSGRDQAPASWQEDSSSRLASPSLSLASTDLKASQQLMAMLKLGGGPKDGGIQASEEGGKAMLDDERAGSLQPPVAASPSRLRSRHGGQEKRVPPKGRFGKIRYSVEELEALKERVKPLASRPTGLPPLVISSRDRTGLPHAGDQAASSEREKGQAQREEDLWENPTDDYWEMPSAGGLGGGGGKETGMSGLDKAFVPDEGLAAAFEAERAKYLRSQGIQASVRKPPGRSGREAPAEAEEEEEPAWAQEASAGFSTIDVYRDLASSSSVTYREGAGPARTKDSQGLQTGNTSSVIKPPSAAAAVATASSFPTSQVPPPARSHSPPETPLARPSPGMEASLRQAPSAPGQGPVVPGEGPTPPGPYRQGLPSPSLPPPGLAPFGRDSTLPLPVTRPQSRPSQAPPPPPAQNGARSAPVSAVDLSAMLFKPQAGGHPARPSPSRMAPSPVTFPPGPQQPLPLPPSSQHHRSSQPRPQAPRSHPFQEQHSQYPAHPPPRQVQQQQQPQPQQQPQQQQPQQQPQPQPQQQQQQPQQPQPQPPQQQQQQQGHHPSNLSAPRESSTLPPGDLMAILGFGAQGPDEASHARHAPQTKAETASSTPVPASKFAFHQGPTKRVLKRKPPGLNAKTLALTRGVIPSSVLISSAGKKKTESRTQVTGSPAPNPMAEECRSMTKLGKKNSPSATLGVKCSQNA
Sbjct:    1 MPRAVRGVAGEGATSGRDQAPASWQEDSSSRLASPSLSLASTDLKASQQLMAMLKLGGGPKDGGIQASEEGGKAMLDDERAGSLQPPVAASPSRLRSRHGGQEKRVPPKGRFGKIRYSVEELEALKERVKPLASRPTGLPPLVISSRDRTGLPHAGDQAASSEREKGQAQREEDLWENPTDDYWEMPSAGGLGGGGGKETGMSGLDKAFVPDEGLAAAFEAERAKYLRSQGIQASVRKPPGRSGREAPAEAEEEEEPAWAQEASAGFSTIDVYRDLASSSSVTYREGAGPARTKDSQGLQTGNTSSVIKPPSAAAAVATASSFPTSQVPPPARSHSPPETPLARPSPGMEASLRQAPSAPGQGPVVPGEGPTPPGPYRQGLPSPSLPPPGLAPFGRDSTLPLPVTRPQSRPSQAPPPPPAQNGARSAPVSAVDLSAMLFKPQAGGHPARPSPSRMAPSPVTFPPGPQQPLPLPPSSQHHRSSQPRPQAPRSHPFQEQHSQYPAHPPPRQVQQQQQPQPQQQPQQQQPQQQPQPQPQQQQQQPQQPQPQPPQQQQQQQGHHPSNLSAPRESSTLPPGDLMAILGFGAQGPDEASHARHAPQTKAETASSTPVPASKFAFHQGPTKRVLKRKPPGLNAKTLALTRGVIPSSVLISSAGKKKTESRTQVTGSPAPNPMAEECRSMTKLGKKNSPSATLGVKCSQNA 703
[Close]
BLAST of EWM24557.1 vs. NCBI_GenBank
Match: gi|553190373|ref|XP_005855177.1| (hypothetical protein NGA_0133600 [Nannochloropsis gaditana CCMP526] >gi|422293880|gb|EKU21180.1| hypothetical protein NGA_0133600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 262.307 bits (669), Expect = 5.027e-77
Identity = 134/144 (93.06%), Postives = 135/144 (93.75%), Query Frame = 0 
Query:  534 QPQQQQQQPQQPQPQPPQQQQQQQGHHPSNLSAPRESSTLPPGDLMAILGFGAQGPDEASHARHAPQTKAETASSTPVPASKFAFHQGPTKRVLKRKPPGLNAKTLALTRGVIPSSVLISSAGKKKTESRTQVTGSPAPNPMAE 677
            + QQQQQQPQQ      QQQQQQQGHHPSNLSAPRESST PPGDLMAILGFGAQGPDEASHARHAPQTKAETASSTPVPASKFAFHQGPT RVLKRKPPGLNAKTLALTRGVIPSSVLISSAGKKKTESRTQVTGSPAPNPMAE
Sbjct:  264 EDQQQQQQPQQ------QQQQQQQGHHPSNLSAPRESSTQPPGDLMAILGFGAQGPDEASHARHAPQTKAETASSTPVPASKFAFHQGPTNRVLKRKPPGLNAKTLALTRGVIPSSVLISSAGKKKTESRTQVTGSPAPNPMAE 401
The following BLAST results are available for this feature:
BLAST of EWM24557.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585106071|gb|EWM24557.1|0.000e+0100.00hypothetical protein Naga_100140g13 [Nannochlorops... [more]
gi|553190373|ref|XP_005855177.1|5.027e-7793.06hypothetical protein NGA_0133600 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6123rna6123Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications