EWM24586.1, cds6099 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24586.1 vs. NCBI_GenBank
Match: gi|585106102|gb|EWM24586.1| (JAB1/Mov34/MPN/PAD-1 [Nannochloropsis gaditana]) HSP 1 Score: 638.262 bits (1645), Expect = 0.000e+0 Identity = 314/314 (100.00%), Postives = 314/314 (100.00%), Query Frame = 0
Query: 1 MALQGSTADALFVDSVQNVHVEVHPVVIFGILDHYNRRPEQGPGQAPGRVIGTLLGTVVGNVVQIHNAFGVPHAENGNEVALGQDYHRTMYAQFTRINDKERIVGWYATTLEEGRALNSNSIIIHGFYAGNSDAAGARLVHLVVDAAVASGRVAIKAYVSTAVHISGAPVANIFHQVKVQVVSTAPERVCLDRMVRGQGREKAWSESDTFAKVLPGGGAVAAREDLEASVAALLKMLEEVIDFVDRVVAGKVEADSAIGCELADTLSAVPRVRPELFDSIFNGNLQDLLMVSYLASLTKANLAISEKLSGVRHK 314
MALQGSTADALFVDSVQNVHVEVHPVVIFGILDHYNRRPEQGPGQAPGRVIGTLLGTVVGNVVQIHNAFGVPHAENGNEVALGQDYHRTMYAQFTRINDKERIVGWYATTLEEGRALNSNSIIIHGFYAGNSDAAGARLVHLVVDAAVASGRVAIKAYVSTAVHISGAPVANIFHQVKVQVVSTAPERVCLDRMVRGQGREKAWSESDTFAKVLPGGGAVAAREDLEASVAALLKMLEEVIDFVDRVVAGKVEADSAIGCELADTLSAVPRVRPELFDSIFNGNLQDLLMVSYLASLTKANLAISEKLSGVRHK
Sbjct: 1 MALQGSTADALFVDSVQNVHVEVHPVVIFGILDHYNRRPEQGPGQAPGRVIGTLLGTVVGNVVQIHNAFGVPHAENGNEVALGQDYHRTMYAQFTRINDKERIVGWYATTLEEGRALNSNSIIIHGFYAGNSDAAGARLVHLVVDAAVASGRVAIKAYVSTAVHISGAPVANIFHQVKVQVVSTAPERVCLDRMVRGQGREKAWSESDTFAKVLPGGGAVAAREDLEASVAALLKMLEEVIDFVDRVVAGKVEADSAIGCELADTLSAVPRVRPELFDSIFNGNLQDLLMVSYLASLTKANLAISEKLSGVRHK 314
BLAST of EWM24586.1 vs. NCBI_GenBank
Match: gi|299115231|emb|CBN74067.1| (translation initiation factor eIF3 f subunit [Ectocarpus siliculosus]) HSP 1 Score: 276.174 bits (705), Expect = 2.368e-88 Identity = 143/295 (48.47%), Postives = 206/295 (69.83%), Query Frame = 0
Query: 15 SVQNVHVEVHPVVIFGILDHYNRRPEQGPGQAPGRVIGTLLGTVVGNVVQIHNAFGVPHAENGNEVALGQDYHRTMYAQFTRINDKERIVGWYATTLEEGRALNSNSIIIHGFYAGNSDAAGARLVHLVVDAAVASGRVAIKAYVSTAVHISGAPVANIFHQVKVQVVSTAPERVCLDRMVRGQGREKAWSESDTFAKVLPGGGAVAAREDLEASVAALLKMLEEVIDFVDRVVAGKVEADSAIGCELADTLSAVPRVRPELFDSIFNGNLQDLLMVSYLASLTKANLAISEKLS 309
S ++ V+VHP+V+F +LDHY RRPE RVIGTLLGTV NVV+I N+F VPH E +EVA+G+D++++M A R+N +E +VGWYAT+ + G + +S +IH FY G + R VHLVVD A+ + V KA++ST + I G+ +AN+FH+VKV +VS ER+C+DRMV+GQ E+A++ + A+V +A+ LE S+ L+ ML++ ++V VV GK+ AD +G +LADTL+A+PR+RPE F+ +F+ NLQDLLMVSYL+SLT+ LAI+EKL+
Sbjct: 43 SSNDIVVKVHPMVLFSVLDHYLRRPENQ-----KRVIGTLLGTVTANVVEITNSFAVPHLEKNDEVAVGKDFNKSMLALQQRVNGRESVVGWYATSFD-GVLIVDDSSLIHDFYTGECE----RPVHLVVDTALKNNIVGCKAFISTPLEIDGSALANVFHEVKVSLVSAEAERICIDRMVKGQ--EEAFTTPEGLAEV---DSRMAS---LETSMQRLVTMLQQAEEYVGTVVDGKLPADPHMGRKLADTLAAIPRMRPEAFNRLFDDNLQDLLMVSYLSSLTRTQLAIAEKLA 319
BLAST of EWM24586.1 vs. NCBI_GenBank
Match: gi|397639682|gb|EJK73701.1| (hypothetical protein THAOC_04661 [Thalassiosira oceanica]) HSP 1 Score: 253.447 bits (646), Expect = 1.951e-79 Identity = 132/296 (44.59%), Postives = 187/296 (63.18%), Query Frame = 0
Query: 19 VHVEVHPVVIFGILDHYNRRPEQGPGQAPGRVIGTLLGTVVGNVVQIHNAFGVPHAENGNEVALGQDYHRTMYAQFTRINDKERIVGWYATTLE-----EGRALNSNSIIIHGFYAGNSDAAGARLVHLVVDAAVASGRVAIKAYVSTAVHISGAPVANIFHQVKVQVVSTAPERVCLDRMVRGQGREKAWSESDTFAKVLPGGGAVAAREDLEASVAALLKMLEEVIDFVDRVVAGKVEADSAIGCELADTLSAVPRVRPELFDSIFNGNLQDLLMVSYLASLTKANLAISEKLS 309
V VHP+V+ +LDH+ RR E GRVIGTLLG G+ V+I N+F VPHAE G+EVA+G+D++R M + R N +E +VGWYAT L E + S +IH FYAG D +HLVVD A+ + +A++AY ST V I G P+AN+FH++++ V S+ ER+C+DRM+ ++S A G E L S+ LL MLE ++VD+VV G V AD A+G ++++ LS++PR+RPE FD +FN +LQDLLMV+YL+++TK L I+EKL+
Sbjct: 40 CQVNVHPLVLLSVLDHHTRRQEGA-----GRVIGTLLGKRNGDTVEITNSFAVPHAERGDEVAIGKDFNRQMLSLHLRANPRETVVGWYATALPDEATGESHCIADTSSLIHEFYAGECDDDP---IHLVVDTALKADAIALRAYKSTPVVIKGEPLANMFHEIRLSVRSSEAERICVDRMI-------GATDSPDGADPTQDEG-----EALRVSMEKLLAMLETCSEYVDKVVDGSVPADDALGMDISECLSSIPRIRPEAFDKMFNDSLQDLLMVTYLSNITKTQLTIAEKLN 315
BLAST of EWM24586.1 vs. NCBI_GenBank
Match: gi|224014492|ref|XP_002296908.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220968288|gb|EED86636.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 251.521 bits (641), Expect = 3.731e-79 Identity = 127/302 (42.05%), Postives = 191/302 (63.25%), Query Frame = 0
Query: 21 VEVHPVVIFGILDHYNRRPEQGPGQAPGRVIGTLLGTVVGNVVQIHNAFGVPHAENGNEVALGQDYHRTMYAQFTRINDKERIVGWYATTLE--------EGRALNSNSIIIHGFYAGNSDAAGARLVHLVVDAAVASGRVAIKAYVSTAVHISGAPVANIFHQVKVQVVSTAPERVCLDRMVRGQGREKAWSESDTFAKVLPGGGAVAARED---LEASVAALLKMLEEVIDFVDRVVAGKVEADSAIGCELADTLSAVPRVRPELFDSIFNGNLQDLLMVSYLASLTKANLAISEKLSGV 311
V VHP+V+ +LDH+ RR E GRVIGTLLG G+ V+I N F VPHAE G+EVA+G+D++R M A R N +E ++GWYAT L E + + S +IH FYA + +HLVVD ++ + +A++AY ST V + G P+AN+FH++++ V S+ ER+C+DRM+R + GA A++++ L+ S+ LL MLE ++VD+VV G + AD +G ++++TL++VPR+RPE+FD +FN +LQDLLMV+YL+++TK L I+EKL+
Sbjct: 1 VLVHPIVLLSVLDHHTRRQE-----GAGRVIGTLLGRRDGDKVEITNCFAVPHAERGDEVAIGKDFNRQMLALHLRANKRETVIGWYATALPDENDPVNGESKCIADTSSLIHEFYATECEDDP---IHLVVDTSLETDAMALRAYKSTPVSVKGEPLANLFHEIRLAVKSSESERICVDRMIRSASSAE---------------GAPASQDESAALQISMERLLAMLETCSEYVDKVVDGTISADDQVGRDISETLNSVPRIRPEVFDKMFNDSLQDLLMVTYLSNITKTQLTIAEKLNAT 279
BLAST of EWM24586.1 vs. NCBI_GenBank
Match: gi|219115896|ref|XP_002178743.1| (COP9 SigNalosome subunit 6, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409510|gb|EEC49441.1| COP9 SigNalosome subunit 6, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 234.958 bits (598), Expect = 1.067e-72 Identity = 121/292 (41.44%), Postives = 180/292 (61.64%), Query Frame = 0
Query: 23 VHPVVIFGILDHYNRRPEQGPGQAPGRVIGTLLGTVVGNVVQIHNAFGVPHAENGNEVALGQDYHRTMYAQFTRINDKERIVGWYAT-----TLEEGRALNSNSIIIHGFYAGNSDAAGARLVHLVVDAAVASGRVAIKAYVSTAVHISGAPVANIFHQVKVQVVSTAPERVCLDRMVRGQGREKAWSESDTFAKVLPGGGAVAAREDLEASVAALLKMLEEVIDFVDRVVAGKVEADSAIGCELADTLSAVPRVRPELFDSIFNGNLQDLLMVSYLASLTKANLAISEKLS 309
VHPVV+ +LDH+ RR E+ GRVIGTLLG GNVV++ N F VPHAE G EVA+G+D+++TM R N KE +VGWYA+ + G + S +IH FYAG +D VHLVVD + ++++A+ S+ + + G + N+FH++K+ + S PE +CL++M+R G A + AK L + S+ L +LE+ + +VD VV GK D+ G ++ADTL+ V RVRPE+FD +F+ +LQDLLMVSYL+++T+ + I++KL+
Sbjct: 3 VHPVVLLHVLDHHTRRQEES-----GRVIGTLLGRQNGNVVEVTNCFSVPHAERGEEVAIGKDFNKTMLGLHLRANRKETVVGWYASAANGDSESNGDLITDTSSLIHDFYAGEADEGDP--VHLVVDTRLKEDSLSMRAFKSSQIVVQGEAMGNLFHELKLSLKSNEPEAICLNQMIRTGGELVASKDESNSAKAL------------QISMEKLYALLEKTLAYVDSVVDGKTPPDAEAGRQIADTLATVARVRPEVFDRLFHDSLQDLLMVSYLSNITRTQMTIADKLN 275
BLAST of EWM24586.1 vs. NCBI_GenBank
Match: gi|1072224767|gb|OEU09516.1| (hypothetical protein FRACYDRAFT_271363 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 220.705 bits (561), Expect = 2.533e-67 Identity = 121/290 (41.72%), Postives = 175/290 (60.34%), Query Frame = 0
Query: 28 IFGILDHYNRRPEQGPGQAPGRVIGTLLGTVVGNVVQIHNAFGVPHAENGNEVALGQDYHRTMYAQFTRINDKERIVGWYATTL------EEGRALNSN-SIIIHGFYAGNSDAAGARLVHLVVDAAVASGRVAIKAYVSTAVHISGAPVANIFHQVKVQVVSTAPERVCLDRMVRGQGREKAWSESDTFAKVLPGGGAVAAREDLEASVAALLKMLEEVIDFVDRVVAGKVEADSAIGCELADTLSAVPRVRPELFDSIFNGNLQDLLMVSYLASLTKANLAISEKLSG 310
+ +LDH+ RR E A GRVIGTLLG G V++ N F VPHAE G+EVA+G+D+++ M A R N KE +VGWYA+ EE L +N S +IH FYA SD VHLVVD + + + Y ST V + G P+AN+FH++++ + ++ PE + L RMV +K E + +E L S+ L +LE D+VD V+ GK+ D+ +G ++ADTL+ VPR+RPE+FD +FN +LQDLLMV+YL+++T+ L+I+EKL+
Sbjct: 1 MLHVLDHHTRRQE-----ASGRVIGTLLGRRDGKKVEVTNCFAVPHAERGDEVAIGKDFNKQMLALHLRANRKETVVGWYASAALGDEDNEEVPDLIANTSSLIHEFYAEESDEGDP--VHLVVDTRLIEDAITARVYRSTPVVVQGEPMANMFHELRLTLKNSEPETLALHRMVADSKGKKDSEE-------------LVEQEPLLVSMEKLFNLLETASDYVDAVIDGKISPDAEVGRKVADTLATVPRIRPEVFDKLFNDSLQDLLMVTYLSNITQTQLSIAEKLNA 270
BLAST of EWM24586.1 vs. NCBI_GenBank
Match: gi|698816480|ref|XP_009841269.1| (hypothetical protein H257_14997 [Aphanomyces astaci] >gi|574103874|gb|ETV69412.1| hypothetical protein H257_14997 [Aphanomyces astaci]) HSP 1 Score: 210.305 bits (534), Expect = 4.126e-63 Identity = 122/290 (42.07%), Postives = 169/290 (58.28%), Query Frame = 0
Query: 21 VEVHPVVIFGILDHYNRRPEQGPGQAPGRVIGTLLGTVVGN--VVQIHNAFGVPHAENGNEVALGQDYHRTMYAQFTRINDKERIVGWYATTLEEGRALNSNSIIIHGFYAGNSDAAGARLVHLVVDAAVASGRVAIKAYVSTAVHISGAPVANIFHQVKVQVVSTAPERVCLDRMVRGQGREKAWSESDTFAKVLPGGGAVAAREDLEASVAALLKMLEEVIDFVDRVVAGKVEADSAIGCELADTLSAVPRVRPELFDSIFNGNLQDLLMVSYLASLTKANLAISEKL 308
V +HPVV+F ILD Y RR E R+IGTLLG V VV + N+F VPH E G++VA+G+DYHR M R+N E +VGWYAT +G +N NS +IH FY+ A A VH+V D ++ + I ++S+A+ ++ +AN F QVKVQ + E + L+ M + S LP E LE S+A L +L + DFV VV+G + IG ELA+ ++++P +R ++FD IFN LQDLLMVSYL+SLT+A L+I+EKL
Sbjct: 15 VNIHPVVVFQILDRYLRRAEDQE-----RIIGTLLGVVDSEHGVVTVSNSFPVPHLEKGDDVAVGKDYHRQMLLLHQRVNPNEVVVGWYATASADGSVVNENSCLIHDFYS----AECAAPVHIVTDTSLRGDNLNISGFISSALTVADVALANQFKQVKVQTKTYEAESIALNVMAKA---------STAALSSLP-----TELEALEHSIARLHALLGQSADFVGNVVSGASVGNPKIGRELAEAVASIPAIRTDVFDQIFNNGLQDLLMVSYLSSLTQAQLSIAEKL 281
BLAST of EWM24586.1 vs. NCBI_GenBank
Match: gi|669148324|ref|XP_008609724.1| (hypothetical protein SDRG_05768 [Saprolegnia diclina VS20] >gi|530738701|gb|EQC36943.1| hypothetical protein SDRG_05768 [Saprolegnia diclina VS20]) HSP 1 Score: 210.305 bits (534), Expect = 4.741e-63 Identity = 124/290 (42.76%), Postives = 171/290 (58.97%), Query Frame = 0
Query: 21 VEVHPVVIFGILDHYNRRPEQGPGQAPGRVIGTLLGTVVGN--VVQIHNAFGVPHAENGNEVALGQDYHRTMYAQFTRINDKERIVGWYATTLEEGRALNSNSIIIHGFYAGNSDAAGARLVHLVVDAAVASGRVAIKAYVSTAVHISGAPVANIFHQVKVQVVSTAPERVCLDRMVRGQGREKAWSESDTFAKVLPGGGAVAAREDLEASVAALLKMLEEVIDFVDRVVAGKVEADSAIGCELADTLSAVPRVRPELFDSIFNGNLQDLLMVSYLASLTKANLAISEKL 308
V VHPVV+F ILD + RR G+ RVIGTLLG V VV I N+F VPH E G+EVA+G+DYHR M R+N E +VGWYAT+ A+N NS +IH FY+ A VH+VVD ++ S + I ++S+A+ ++ +AN F QVKV+ + E + LD M + A LP E LE ++ L ++L +V VVAGK A+ +G ELA+ ++++P +R ++FD IFN +QDLLMVSYL+SLT+A L+ISEKL
Sbjct: 13 VHVHPVVVFQILDRFLRR-----GEDQKRVIGTLLGVVDAEHGVVTISNSFPVPHLEKGDEVAVGKDYHRQMLLLHQRVNPNEVVVGWYATS-TTAEAINENSCLIHEFYSSEC----ASPVHVVVDTSLESDNLNIMGFISSALSVADVALANQFKQVKVETKTYEAESIALDVMAKRSSS----------AASLPSD-----LEALEQAIVRLHELLATSAAYVGDVVAGKQAANPKLGRELAEAVASIPPMRADVFDQIFNNGMQDLLMVSYLSSLTQAQLSISEKL 277
BLAST of EWM24586.1 vs. NCBI_GenBank
Match: gi|1173937234|gb|OQR88071.1| (eukaryotic translation initiation factor 3 subunit F [Achlya hypogyna]) HSP 1 Score: 208.764 bits (530), Expect = 1.574e-62 Identity = 123/290 (42.41%), Postives = 174/290 (60.00%), Query Frame = 0
Query: 21 VEVHPVVIFGILDHYNRRPEQGPGQAPGRVIGTLLGTVVGN--VVQIHNAFGVPHAENGNEVALGQDYHRTMYAQFTRINDKERIVGWYATTLEEGRALNSNSIIIHGFYAGNSDAAGARLVHLVVDAAVASGRVAIKAYVSTAVHISGAPVANIFHQVKVQVVSTAPERVCLDRMVRGQGREKAWSESDTFAKVLPGGGAVAAREDLEASVAALLKMLEEVIDFVDRVVAGKVEADSAIGCELADTLSAVPRVRPELFDSIFNGNLQDLLMVSYLASLTKANLAISEKL 308
V VHPVV+F ILD + RR Q RVIGTLLG V VV I N+F VPH E G+EVA+G+DYHR M R+N E +VGWYAT+ A+N NS +IH FY+ A A VH+VVD ++ + + I ++S+A+ ++ +AN F QVKV+ + E + LD M + + E A SD E LEA++ L ++L + +V VVAGK A+ +G ELA+ ++++P + ++FD +FN +QDLLMVSYL+SLT+A L+I+EKL
Sbjct: 13 VHVHPVVVFQILDRFLRR-----AQDQKRVIGTLLGVVDAEHGVVTISNSFPVPHLEKGDEVAVGKDYHRQMLLLHQRVNPNEVVVGWYATS-TTAEAINENSCLIHEFYS----AECATPVHVVVDTSLQTDNLNIMGFISSALSVADVALANQFKQVKVETKTYEAEAIALDVMAK-RSSEAASLPSDL--------------EALEAAIVRLHELLAQSAAYVGEVVAGKQAANPKLGRELAEAVASIPPMHADVFDQMFNNGMQDLLMVSYLSSLTQAQLSIAEKL 277
BLAST of EWM24586.1 vs. NCBI_GenBank
Match: gi|675171359|ref|XP_008894564.1| (hypothetical protein PPTG_03631 [Phytophthora parasitica INRA-310] >gi|566018125|gb|ETI41036.1| hypothetical protein F443_13678 [Phytophthora parasitica P1569] >gi|566018156|gb|ETI41067.1| hypothetical protein F443_13674 [Phytophthora parasitica P1569] >gi|567955512|gb|ETK81145.1| hypothetical protein L915_13349 [Phytophthora parasitica] >gi|567984183|gb|ETL34558.1| hypothetical protein L916_13230 [Phytophthora parasitica] >gi|568013643|gb|ETL87820.1| hypothetical protein L917_13055 [Phytophthora parasitica] >gi|568043799|gb|ETM41065.1| hypothetical protein L914_13143 [Phytophthora parasitica] >gi|568106053|gb|ETN20689.1| hypothetical protein PPTG_03631 [Phytophthora parasitica INRA-310] >gi|570321785|gb|ETO69733.1| hypothetical protein F444_13741 [Phytophthora parasitica P1976] >gi|570945575|gb|ETP10832.1| hypothetical protein F441_13607 [Phytophthora parasitica CJ01A1] >gi|570977351|gb|ETP38974.1| hypothetical protein F442_13542 [Phytophthora parasitica P10297] >gi|970663236|gb|KUG00469.1| Eukaryotic translation initiation factor 3 subunit F-1 [Phytophthora nicotianae]) HSP 1 Score: 206.453 bits (524), Expect = 1.341e-61 Identity = 122/299 (40.80%), Postives = 172/299 (57.53%), Query Frame = 0
Query: 10 ALFVDSVQNVHVEVHPVVIFGILDHYNRRPEQGPGQAPGRVIGTLLGTVVGNVVQIHNAFGVPHAENGNEVALGQDYHRTMYAQFTRINDKERIVGWYATTLEEGRALNSNSIIIHGFYAGNSDAAGARLVHLVVDAAVASGRVAIKAYVSTAVHISGAPVANIFHQVKVQVVSTAPERVCLDRMVRGQGREKAWSESDTFAKVLPGGGAVAAREDLEASVAALLKMLEEVIDFVDRVVAGKVEADSAIGCELADTLSAVPRVRPELFDSIFNGNLQDLLMVSYLASLTKANLAISEKL 308
AL + + V++HPVV+ +LD RR E RVIGTLLG V G V +I N+F VPH ENG+EVA+G+D+H MY R+N+ E +VGWYA L+ +S +IH FY+ + VHLV+D ++AS ++ + AYV+ + + + N F Q+ V + PE + L+ M G KA + LP E LE ++ L K ++ FV VVAGK ADS +G E+AD L+A+P +R E FD +FN LQDLLMVSYL+ LT+A L+++EKL
Sbjct: 3 ALLLGTEPVTEVKLHPVVVLQVLDRSLRRAEDQE-----RVIGTLLGRVEGGVAEITNSFAVPHLENGDEVAVGRDFHTHMYELHQRVNEGEVVVGWYAAG---PNRLDDHSALIHQFYSSVCELP----VHLVLDTSLASDKLDVSAYVAAPLEVVDTALVNQFKQIPVTQKLSEPEAIALNAMAPKDGENKAVA--------LP-----KELEALEETMEQLYKCIDGASSFVGDVVAGKQTADSKLGREIADALAAIPILREEQFDQLFNTGLQDLLMVSYLSGLTQAQLSMAEKL 276 The following BLAST results are available for this feature:
BLAST of EWM24586.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|