EWM24605.1, cds6068 (CDS) Nannochloropsis gaditana

Overview
NameEWM24605.1
Unique Namecds6068
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:531704..532177 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24605.1
ProductBolA-like family protein
Orig transcript idgnl|cribi|Naga_100171g3.2663.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:531704..532177 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR002634BolA
Homology
BLAST of EWM24605.1 vs. NCBI_GenBank
Match: gi|585106122|gb|EWM24605.1| (BolA-like family protein [Nannochloropsis gaditana])

HSP 1 Score: 315.849 bits (808), Expect = 5.711e-109
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 0
Query:    1 MLGRVPSFLVRSCARAEAPITSSALPVRLQSPSSRTMSNSATCAKRDHSAQLGGPIQSCIERKLQAALVPAHLQVINESHSHNVPKGSETHFKVVAVSSMFEGKALLARHRLINGLLSEELEAGIHALSIVAKTASEWEKAEGAVPPSPACRGGSQK 157
            MLGRVPSFLVRSCARAEAPITSSALPVRLQSPSSRTMSNSATCAKRDHSAQLGGPIQSCIERKLQAALVPAHLQVINESHSHNVPKGSETHFKVVAVSSMFEGKALLARHRLINGLLSEELEAGIHALSIVAKTASEWEKAEGAVPPSPACRGGSQK
Sbjct:    1 MLGRVPSFLVRSCARAEAPITSSALPVRLQSPSSRTMSNSATCAKRDHSAQLGGPIQSCIERKLQAALVPAHLQVINESHSHNVPKGSETHFKVVAVSSMFEGKALLARHRLINGLLSEELEAGIHALSIVAKTASEWEKAEGAVPPSPACRGGSQK 157          
BLAST of EWM24605.1 vs. NCBI_GenBank
Match: gi|909578210|ref|XP_013144956.1| (PREDICTED: bolA-like protein DDB_G0274169 isoform X2 [Papilio polytes])

HSP 1 Score: 137.887 bits (346), Expect = 3.719e-39
Identity = 68/130 (52.31%), Postives = 89/130 (68.46%), Query Frame = 0
Query:   28 RLQSPSSRTMSNSATCAKRDHSAQLGGPIQSCIERKLQAALVPAHLQVINESHSHNVPKGSETHFKVVAVSSMFEGKALLARHRLINGLLSEELEAGIHALSIVAKTASEWEKAEGAVPPSPACRGGSQK 157
            RL++P+ R + N  T           G + + I+ KLQ AL   HL+VINES+ HNVPKG+ETHFKVV VS  F+G AL+ RHRL+N +L EEL+ G+HALSIVAKT  +W+++E  V  SP+CRGG  K
Sbjct:    6 RLRTPTLR-LVNMGTET---------GVVANSIQNKLQTALEATHLEVINESYMHNVPKGAETHFKVVVVSDKFDGLALIKRHRLVNDILKEELKNGVHALSIVAKTTKQWDESEKIVESSPSCRGGFGK 125          
BLAST of EWM24605.1 vs. NCBI_GenBank
Match: gi|943978880|ref|XP_014370362.1| (PREDICTED: bolA-like protein DDB_G0274169 [Papilio machaon] >gi|930664861|gb|KPJ05992.1| BolA-like protein [Papilio machaon])

HSP 1 Score: 137.502 bits (345), Expect = 4.123e-39
Identity = 62/104 (59.62%), Postives = 77/104 (74.04%), Query Frame = 0
Query:   54 GPIQSCIERKLQAALVPAHLQVINESHSHNVPKGSETHFKVVAVSSMFEGKALLARHRLINGLLSEELEAGIHALSIVAKTASEWEKAEGAVPPSPACRGGSQK 157
            G + + I  KLQ AL   HL VINES+ HNVPKGSETHFKVV VS  F+G AL+ RHRL+N +L EEL+ G+HALSIVAKT  +W+++E  +  SP+CRGG  K
Sbjct:    6 GVVANSIRNKLQTALEATHLDVINESYMHNVPKGSETHFKVVVVSDKFDGLALIKRHRLVNDILKEELQNGVHALSIVAKTTKQWDESEKIIESSPSCRGGFGK 109          
BLAST of EWM24605.1 vs. NCBI_GenBank
Match: gi|909578208|ref|XP_013144955.1| (PREDICTED: bolA-like protein DDB_G0274169 isoform X1 [Papilio polytes])

HSP 1 Score: 137.887 bits (346), Expect = 5.168e-39
Identity = 62/104 (59.62%), Postives = 79/104 (75.96%), Query Frame = 0
Query:   54 GPIQSCIERKLQAALVPAHLQVINESHSHNVPKGSETHFKVVAVSSMFEGKALLARHRLINGLLSEELEAGIHALSIVAKTASEWEKAEGAVPPSPACRGGSQK 157
            G + + I+ KLQ AL   HL+VINES+ HNVPKG+ETHFKVV VS  F+G AL+ RHRL+N +L EEL+ G+HALSIVAKT  +W+++E  V  SP+CRGG  K
Sbjct:   26 GVVANSIQNKLQTALEATHLEVINESYMHNVPKGAETHFKVVVVSDKFDGLALIKRHRLVNDILKEELKNGVHALSIVAKTTKQWDESEKIVESSPSCRGGFGK 129          
BLAST of EWM24605.1 vs. NCBI_GenBank
Match: gi|673023646|ref|XP_008865784.1| (hypothetical protein H310_03625, partial [Aphanomyces invadans] >gi|574479012|gb|ETW06007.1| hypothetical protein H310_03625, partial [Aphanomyces invadans])

HSP 1 Score: 137.502 bits (345), Expect = 6.652e-39
Identity = 63/101 (62.38%), Postives = 81/101 (80.20%), Query Frame = 0
Query:   54 GPIQSCIERKLQAALVPAHLQVINESHSHNVPKGSETHFKVVAVSSMFEGKALLARHRLINGLLSEELEAGIHALSIVAKTASEWEKAEGAVPPSPACRGG 154
            GPI S I++KLQ A  P+HL+V+NES+ HNVPKGSETHFKVV VS+ FEGK L+ RHRL+N +L++EL+ G+HALSI +KT S+W+ A   V PSP+C GG
Sbjct:   26 GPIFSSIQKKLQDAFQPSHLEVLNESYMHNVPKGSETHFKVVVVSAAFEGKPLIQRHRLVNQVLADELDGGVHALSIQSKTPSQWD-ANSTVRPSPSCLGG 125          
BLAST of EWM24605.1 vs. NCBI_GenBank
Match: gi|1214674594|gb|OWY96780.1| (hypothetical protein PHMEG_00032869 [Phytophthora megakarya])

HSP 1 Score: 136.732 bits (343), Expect = 1.291e-38
Identity = 61/101 (60.40%), Postives = 77/101 (76.24%), Query Frame = 0
Query:   54 GPIQSCIERKLQAALVPAHLQVINESHSHNVPKGSETHFKVVAVSSMFEGKALLARHRLINGLLSEELEAGIHALSIVAKTASEWEKAEGAVPPSPACRGG 154
            GP+   I  KL AA  P+HL VINESH HNVPKG+ETHFKVV V+  F+GKALL RHR++N +L +EL+ G+HALSI++KT  +WE A   + PSP+CRGG
Sbjct:    6 GPVARRIHEKLLAAFAPSHLDVINESHMHNVPKGAETHFKVVVVTEQFDGKALLQRHRMVNAVLQQELDDGVHALSILSKTPKQWE-ANAQIKPSPSCRGG 105          
BLAST of EWM24605.1 vs. NCBI_GenBank
Match: gi|1173944600|gb|OQR93319.1| (BolA-like protein [Achlya hypogyna])

HSP 1 Score: 136.732 bits (343), Expect = 1.293e-38
Identity = 62/101 (61.39%), Postives = 78/101 (77.23%), Query Frame = 0
Query:   54 GPIQSCIERKLQAALVPAHLQVINESHSHNVPKGSETHFKVVAVSSMFEGKALLARHRLINGLLSEELEAGIHALSIVAKTASEWEKAEGAVPPSPACRGG 154
            GPI S I+ KL +A VP HL+V+NES+ HNVPKGSETHFKV+ VS +FEGK L+ RHR++N +L EEL  G+HALSI +KT ++WE A   V PSP C+GG
Sbjct:   22 GPIFSAIQTKLASAFVPTHLEVLNESYMHNVPKGSETHFKVIVVSDLFEGKPLIQRHRMVNAVLEEELNGGVHALSIQSKTPAQWE-ANSTVRPSPTCQGG 121          
BLAST of EWM24605.1 vs. NCBI_GenBank
Match: gi|568012492|gb|ETL86670.1| (hypothetical protein L917_13925 [Phytophthora parasitica] >gi|568042517|gb|ETM39842.1| hypothetical protein L914_14051 [Phytophthora parasitica] >gi|970642120|gb|KUF83907.1| BolA protein [Phytophthora nicotianae] >gi|970650639|gb|KUF89626.1| Peptidyl-prolyl cis-trans isomerase C [Phytophthora nicotianae])

HSP 1 Score: 135.961 bits (341), Expect = 2.827e-38
Identity = 61/101 (60.40%), Postives = 74/101 (73.27%), Query Frame = 0
Query:   54 GPIQSCIERKLQAALVPAHLQVINESHSHNVPKGSETHFKVVAVSSMFEGKALLARHRLINGLLSEELEAGIHALSIVAKTASEWEKAEGAVPPSPACRGG 154
            GP+   I  KL AA  P HL VINESH HNVPKGSETHFKVV V+  F+GK L+ RHR++N +L +EL+ G+HALSI++KT  +WE A   V PSP CRGG
Sbjct:    6 GPVSRRIHEKLLAAFTPTHLDVINESHMHNVPKGSETHFKVVVVTDQFDGKPLIQRHRMVNAVLQQELDDGVHALSILSKTPKQWE-ANAQVKPSPNCRGG 105          
BLAST of EWM24605.1 vs. NCBI_GenBank
Match: gi|567954305|gb|ETK79943.1| (hypothetical protein L915_14239 [Phytophthora parasitica] >gi|567982959|gb|ETL33361.1| hypothetical protein L916_14144 [Phytophthora parasitica])

HSP 1 Score: 135.961 bits (341), Expect = 2.858e-38
Identity = 61/101 (60.40%), Postives = 74/101 (73.27%), Query Frame = 0
Query:   54 GPIQSCIERKLQAALVPAHLQVINESHSHNVPKGSETHFKVVAVSSMFEGKALLARHRLINGLLSEELEAGIHALSIVAKTASEWEKAEGAVPPSPACRGG 154
            GP+   I  KL AA  P HL VINESH HNVPKGSETHFKVV V+  F+GK L+ RHR++N +L +EL+ G+HALSI++KT  +WE A   V PSP CRGG
Sbjct:    6 GPVSRRIHEKLLAAFTPTHLDVINESHMHNVPKGSETHFKVVVVTDQFDGKPLIQRHRMVNAVLQQELDDGVHALSILSKTPKQWE-ANAQVKPSPNCRGG 105          
BLAST of EWM24605.1 vs. NCBI_GenBank
Match: gi|570944426|gb|ETP09683.1| (hypothetical protein F441_14476 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 135.961 bits (341), Expect = 3.548e-38
Identity = 61/101 (60.40%), Postives = 74/101 (73.27%), Query Frame = 0
Query:   54 GPIQSCIERKLQAALVPAHLQVINESHSHNVPKGSETHFKVVAVSSMFEGKALLARHRLINGLLSEELEAGIHALSIVAKTASEWEKAEGAVPPSPACRGG 154
            GP+   I  KL AA  P HL VINESH HNVPKGSETHFKVV V+  F+GK L+ RHR++N +L +EL+ G+HALSI++KT  +WE A   V PSP CRGG
Sbjct:   20 GPVSRRIHEKLLAAFTPTHLDVINESHMHNVPKGSETHFKVVVVTDQFDGKPLIQRHRMVNAVLQQELDDGVHALSILSKTPKQWE-ANAQVKPSPNCRGG 119          
The following BLAST results are available for this feature:
BLAST of EWM24605.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106122|gb|EWM24605.1|5.711e-109100.00BolA-like family protein [Nannochloropsis gaditana... [more]
gi|909578210|ref|XP_013144956.1|3.719e-3952.31PREDICTED: bolA-like protein DDB_G0274169 isoform ... [more]
gi|943978880|ref|XP_014370362.1|4.123e-3959.62PREDICTED: bolA-like protein DDB_G0274169 [Papilio... [more]
gi|909578208|ref|XP_013144955.1|5.168e-3959.62PREDICTED: bolA-like protein DDB_G0274169 isoform ... [more]
gi|673023646|ref|XP_008865784.1|6.652e-3962.38hypothetical protein H310_03625, partial [Aphanomy... [more]
gi|1214674594|gb|OWY96780.1|1.291e-3860.40hypothetical protein PHMEG_00032869 [Phytophthora ... [more]
gi|1173944600|gb|OQR93319.1|1.293e-3861.39BolA-like protein [Achlya hypogyna][more]
gi|568012492|gb|ETL86670.1|2.827e-3860.40hypothetical protein L917_13925 [Phytophthora para... [more]
gi|567954305|gb|ETK79943.1|2.858e-3860.40hypothetical protein L915_14239 [Phytophthora para... [more]
gi|570944426|gb|ETP09683.1|3.548e-3860.40hypothetical protein F441_14476 [Phytophthora para... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6083rna6083Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications