EWM24615.1, cds6059 (CDS) Nannochloropsis gaditana

Overview
NameEWM24615.1
Unique Namecds6059
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:512893..513110 +
Alignment locationCM002467.1:513284..514448 +
Alignment locationCM002467.1:514498..514624 +
Alignment locationCM002467.1:514671..514888 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24615.1
Productprotein transport protein sec61 subunit alpha
Orig transcript idgnl|cribi|Naga_100171g15.2673.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:512893..513110 +
CM002467.1supercontigCM002467.1:513284..514448 +
CM002467.1supercontigCM002467.1:514498..514624 +
CM002467.1supercontigCM002467.1:514671..514888 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0015031protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR030659SecY_CS
IPR019561Translocon_Sec61/SecY_plug_dom
IPR002208SecY/SEC61-alpha
IPR023201SecY_su_dom
Homology
BLAST of EWM24615.1 vs. NCBI_GenBank
Match: gi|585106132|gb|EWM24615.1| (protein transport protein sec61 subunit alpha [Nannochloropsis gaditana])

HSP 1 Score: 1182.16 bits (3057), Expect = 0.000e+0
Identity = 575/575 (100.00%), Postives = 575/575 (100.00%), Query Frame = 0
Query:    1 MVRFLHLIRPVLCIVPEVAAPVDRKIPFREKVLWTVVTLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGISPIVTSGLVMQLLAGSRIIEVNQSLKEDRALFSGAQKLFGILITIGEAVAYVFSGMYGDLNSLGWGNAILIIAQLFIAGMIVITLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINTGRGTEFEGAIIALFHLLITRSDKMRALKEAFYRQNLPNVTNLLATVLVFIIVIYFQGWRVDLPVKSQRYRGQQGTYPIKLFYTSNMPIILQTALVSNLYFLSQLLHKRFSGNILVRLLGRWQEVEGQQGQSVPVGGIAYYISPPHSMTEILSDPFHAVFYLAFILSSCALFSKTWIEVSGSSAKDVAKQLRDSKMVMKGHRDSALVHELNRYIPVAAAFGGMCIGALTVVADFLGAIGSGTGILLAVTIIYQYYEMFMKGEVLCDRKFRRHFRRLPGKRTGEGRWNRKESKSKGAEELKKGEIRSRWLDTSEGSIGIAAWRIKKVSALTAMQRRKERHLGRSHCLGPQRLPTCFYSSPFSRACTAKPHSRD 575
            MVRFLHLIRPVLCIVPEVAAPVDRKIPFREKVLWTVVTLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGISPIVTSGLVMQLLAGSRIIEVNQSLKEDRALFSGAQKLFGILITIGEAVAYVFSGMYGDLNSLGWGNAILIIAQLFIAGMIVITLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINTGRGTEFEGAIIALFHLLITRSDKMRALKEAFYRQNLPNVTNLLATVLVFIIVIYFQGWRVDLPVKSQRYRGQQGTYPIKLFYTSNMPIILQTALVSNLYFLSQLLHKRFSGNILVRLLGRWQEVEGQQGQSVPVGGIAYYISPPHSMTEILSDPFHAVFYLAFILSSCALFSKTWIEVSGSSAKDVAKQLRDSKMVMKGHRDSALVHELNRYIPVAAAFGGMCIGALTVVADFLGAIGSGTGILLAVTIIYQYYEMFMKGEVLCDRKFRRHFRRLPGKRTGEGRWNRKESKSKGAEELKKGEIRSRWLDTSEGSIGIAAWRIKKVSALTAMQRRKERHLGRSHCLGPQRLPTCFYSSPFSRACTAKPHSRD
Sbjct:    1 MVRFLHLIRPVLCIVPEVAAPVDRKIPFREKVLWTVVTLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGISPIVTSGLVMQLLAGSRIIEVNQSLKEDRALFSGAQKLFGILITIGEAVAYVFSGMYGDLNSLGWGNAILIIAQLFIAGMIVITLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINTGRGTEFEGAIIALFHLLITRSDKMRALKEAFYRQNLPNVTNLLATVLVFIIVIYFQGWRVDLPVKSQRYRGQQGTYPIKLFYTSNMPIILQTALVSNLYFLSQLLHKRFSGNILVRLLGRWQEVEGQQGQSVPVGGIAYYISPPHSMTEILSDPFHAVFYLAFILSSCALFSKTWIEVSGSSAKDVAKQLRDSKMVMKGHRDSALVHELNRYIPVAAAFGGMCIGALTVVADFLGAIGSGTGILLAVTIIYQYYEMFMKGEVLCDRKFRRHFRRLPGKRTGEGRWNRKESKSKGAEELKKGEIRSRWLDTSEGSIGIAAWRIKKVSALTAMQRRKERHLGRSHCLGPQRLPTCFYSSPFSRACTAKPHSRD 575          
BLAST of EWM24615.1 vs. NCBI_GenBank
Match: gi|298710680|emb|CBJ32105.1| (putative Sec61/secY [Ectocarpus siliculosus])

HSP 1 Score: 842.803 bits (2176), Expect = 0.000e+0
Identity = 407/464 (87.72%), Postives = 433/464 (93.32%), Query Frame = 0
Query:    2 VRFLHLIRPVLCIVPEVAAPVDRKIPFREKVLWTVVTLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGISPIVTSGLVMQLLAGSRIIEVNQSLKEDRALFSGAQKLFGILITIGEAVAYVFSGMYGDLNSLGWGNAILIIAQLFIAGMIVITLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINTGRGTEFEGAIIALFHLLITRSDKMRALKEAFYRQNLPNVTNLLATVLVFIIVIYFQGWRVDLPVKSQRYRGQQGTYPIKLFYTSNMPIILQTALVSNLYFLSQLLHKRFSGNILVRLLGRWQEVEGQQGQSVPVGGIAYYISPPHSMTEILSDPFHAVFYLAFILSSCALFSKTWIEVSGSSAKDVAKQLRDSKMVMKGHRDSALVHELNRYIPVAAAFGGMCIGALTVVADFLGAIGSGTGILLAVTIIYQYYEMFMKGE 465
            +RFLHLIRPV+C++PEVA P DRKIPFREKVLWTV+TLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGISPIVTS LVMQLLAGSRIIEVNQS+KEDRALFSGAQKLFGILITIGEAVAYV SGMYGDL++LG GNAILII QLF AG+IVI LDELLQKGYGLGSGISLFIATNICE IIWKAFSPTTINTGRGTEFEGAIIALFHL+ITR DKMRAL+EAFYRQNLPN+TNLLAT LVFI+VIYFQGWRVDLPVK Q+YRGQQGTYPIKLFYTSNMP+ILQTALVSNLYFLSQLLH R++GN+LVRL+GRW EVEG  G SVPVGG+AYYISPP +M EIL DP HAV Y+ FIL++CALFSKTWIEVSGSSAKDVAKQLRD +MVMKGHRD ALVH L RYIP AAAFGGMCIGALTV ADFLGAIGSGTGILLAVTIIYQYYEMF K +
Sbjct:    1 MRFLHLIRPVMCVLPEVAQP-DRKIPFREKVLWTVITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGISPIVTSSLVMQLLAGSRIIEVNQSIKEDRALFSGAQKLFGILITIGEAVAYVVSGMYGDLSTLGAGNAILIICQLFFAGLIVIILDELLQKGYGLGSGISLFIATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLMITRPDKMRALQEAFYRQNLPNITNLLATALVFIVVIYFQGWRVDLPVKYQKYRGQQGTYPIKLFYTSNMPVILQTALVSNLYFLSQLLHNRYAGNLLVRLMGRWAEVEGMPGTSVPVGGLAYYISPPTTMAEILKDPVHAVIYITFILTACALFSKTWIEVSGSSAKDVAKQLRDQQMVMKGHRDDALVHVLERYIPTAAAFGGMCIGALTVAADFLGAIGSGTGILLAVTIIYQYYEMFSKEQ 463          
BLAST of EWM24615.1 vs. NCBI_GenBank
Match: gi|219129623|ref|XP_002184983.1| (transport protein Sec61 alpha subunit [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403478|gb|EEC43430.1| transport protein Sec61 alpha subunit [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 819.305 bits (2115), Expect = 0.000e+0
Identity = 392/464 (84.48%), Postives = 437/464 (94.18%), Query Frame = 0
Query:    2 VRFLHLIRPVLCIVPEVAAPVDRKIPFREKVLWTVVTLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGISPIVTSGLVMQLLAGSRIIEVNQSLKEDRALFSGAQKLFGILITIGEAVAYVFSGMYGDLNSLGWGNAILIIAQLFIAGMIVITLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINTGRGTEFEGAIIALFHLLITRSDKMRALKEAFYRQNLPNVTNLLATVLVFIIVIYFQGWRVDLPVKSQRYRGQQGTYPIKLFYTSNMPIILQTALVSNLYFLSQLLHKRFSGNILVRLLGRWQEVEGQQGQSVPVGGIAYYISPPHSMTEILSDPFHAVFYLAFILSSCALFSKTWIEVSGSSAKDVAKQLRDSKMVMKGHRDSALVHELNRYIPVAAAFGGMCIGALTVVADFLGAIGSGTGILLAVTIIYQYYEMFMKGE 465
            +RFLHLIRPV+C++PEVA+P DRKIPFREK+LWT +TLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGISPIVTSGLVMQLLAGSRIIEV+ ++KEDRALFSGAQKLFGILIT GEA+AYV SGMYGDL S+G GNAILIIAQLF AG+IV+TLDELLQKGYGLGSGISLFIATNICENI+WKAFSPTTINTGRGTEFEGAIIALFHLLITRS+K++AL+EAFYRQNLPNVTNLLATVL+F+IVIYFQGWRV+LPVK Q+YRGQ+G YPIKLFYTSNMPIILQTALVSNLYF+SQLL+ R   NILVRLLG+WQEVEG  G  +PVGGIAYYISPP S  EI+ DPFHAVFYL FIL++CALFSKTWIEVSG+SA+DVAKQLRD++MVMKGHRDSAL+H LNRYIP AAAFGGMCIGAL+V+ADF+GAIG+GTGILL+VTII+Q+YE F+K +
Sbjct:   88 MRFLHLIRPVMCVLPEVASP-DRKIPFREKLLWTTITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGISPIVTSGLVMQLLAGSRIIEVDYNVKEDRALFSGAQKLFGILITTGEAIAYVVSGMYGDLGSIGAGNAILIIAQLFCAGLIVLTLDELLQKGYGLGSGISLFIATNICENIVWKAFSPTTINTGRGTEFEGAIIALFHLLITRSNKIQALREAFYRQNLPNVTNLLATVLIFVIVIYFQGWRVNLPVKYQKYRGQEGNYPIKLFYTSNMPIILQTALVSNLYFVSQLLYNRAPTNILVRLLGKWQEVEGSAGNKIPVGGIAYYISPPQSFAEIIYDPFHAVFYLVFILTACALFSKTWIEVSGASARDVAKQLRDNQMVMKGHRDSALIHVLNRYIPTAAAFGGMCIGALSVIADFMGAIGTGTGILLSVTIIFQFYEAFVKEQ 550          
BLAST of EWM24615.1 vs. NCBI_GenBank
Match: gi|1210522776|dbj|GAX18472.1| (protein transport protein SEC61 subunit alpha [Fistulifera solaris])

HSP 1 Score: 818.92 bits (2114), Expect = 0.000e+0
Identity = 387/464 (83.41%), Postives = 437/464 (94.18%), Query Frame = 0
Query:    2 VRFLHLIRPVLCIVPEVAAPVDRKIPFREKVLWTVVTLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGISPIVTSGLVMQLLAGSRIIEVNQSLKEDRALFSGAQKLFGILITIGEAVAYVFSGMYGDLNSLGWGNAILIIAQLFIAGMIVITLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINTGRGTEFEGAIIALFHLLITRSDKMRALKEAFYRQNLPNVTNLLATVLVFIIVIYFQGWRVDLPVKSQRYRGQQGTYPIKLFYTSNMPIILQTALVSNLYFLSQLLHKRFSGNILVRLLGRWQEVEGQQGQSVPVGGIAYYISPPHSMTEILSDPFHAVFYLAFILSSCALFSKTWIEVSGSSAKDVAKQLRDSKMVMKGHRDSALVHELNRYIPVAAAFGGMCIGALTVVADFLGAIGSGTGILLAVTIIYQYYEMFMKGE 465
            +RFLHLIRPV+C++PEVA+P DRKIPFREK+LWT +TLFIFLVCCQIPIYGVQSAKSSDPFYWMRVI+ASNRGTLMELGISPIVTSGLVMQLLAGSRIIEV+ ++KEDRALFSGAQKLFGILIT+GEA+AYV SGMYGDL S+G GNA+LIIAQLF AG+IV+TLDELLQKGYGLGSGISLFIATNICE IIWKAFSPTTINTGRGTEFEGAI+ALFHL+ITRS+K++AL+EA YRQNLPN+TNLLATVLVF+IVIYFQGWRV+LPVK Q+YRGQ+G YPIKLFYTSNMPIILQTALVSNLYF+SQLL+ R   N+LVRLLG+WQEVEG  GQ +PVGGIAYYISPP S+ EI+ DPFHAVFYL FIL++CALFSKTWIEVSG+SA+DVAKQLRD++MVMKGHRDSAL+H LNRYIP AAAFGGMCIGAL+V+ADF+GAIG+GTGILLAVTII+ +YE F+K +
Sbjct:    1 MRFLHLIRPVMCVLPEVASP-DRKIPFREKLLWTTITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVIMASNRGTLMELGISPIVTSGLVMQLLAGSRIIEVDYNVKEDRALFSGAQKLFGILITVGEAIAYVVSGMYGDLGSIGAGNALLIIAQLFCAGLIVLTLDELLQKGYGLGSGISLFIATNICETIIWKAFSPTTINTGRGTEFEGAIVALFHLMITRSNKVQALQEALYRQNLPNLTNLLATVLVFVIVIYFQGWRVNLPVKYQKYRGQEGNYPIKLFYTSNMPIILQTALVSNLYFVSQLLYNRAPTNVLVRLLGKWQEVEGSPGQKIPVGGIAYYISPPQSLAEIIYDPFHAVFYLTFILTACALFSKTWIEVSGASARDVAKQLRDNQMVMKGHRDSALIHVLNRYIPTAAAFGGMCIGALSVIADFMGAIGTGTGILLAVTIIFTFYEAFLKEQ 463          
BLAST of EWM24615.1 vs. NCBI_GenBank
Match: gi|944186151|dbj|BAT25244.1| (Sec61alpha [Nitzschia sp. IriIs04])

HSP 1 Score: 815.068 bits (2104), Expect = 0.000e+0
Identity = 389/462 (84.20%), Postives = 431/462 (93.29%), Query Frame = 0
Query:    2 VRFLHLIRPVLCIVPEVAAPVDRKIPFREKVLWTVVTLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGISPIVTSGLVMQLLAGSRIIEVNQSLKEDRALFSGAQKLFGILITIGEAVAYVFSGMYGDLNSLGWGNAILIIAQLFIAGMIVITLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINTGRGTEFEGAIIALFHLLITRSDKMRALKEAFYRQNLPNVTNLLATVLVFIIVIYFQGWRVDLPVKSQRYRGQQGTYPIKLFYTSNMPIILQTALVSNLYFLSQLLHKRFSGNILVRLLGRWQEVEGQQGQSVPVGGIAYYISPPHSMTEILSDPFHAVFYLAFILSSCALFSKTWIEVSGSSAKDVAKQLRDSKMVMKGHRDSALVHELNRYIPVAAAFGGMCIGALTVVADFLGAIGSGTGILLAVTIIYQYYEMFMK 463
            +RFLHLIRPV+  +PEV +P DRKIPFREK+LWT +TLFIFLVCCQIP+YGVQSA SSDPFYWMRVILASNRGTLMELGISPIVTSGLVMQLLAGSRIIEV+ ++KEDRALFSGAQKLFGILIT GEA+AYV SGMYGDL S+G GNAILIIAQLF AG+IV+TLDELLQKGYGLGSGISLFIATNICENI+WKAFSPTTINTGRGTEFEGAIIALFHLLITRS+K+RAL+EA YRQNLPN+TNLLATVL+F+IVIYFQGWRVDLPVK Q+YRGQ GTYPIKLFYTSNMPIILQTALVSNLYF+SQLL+ R   NILVRLLG+WQE EG+ G  +PVGGIAYYISPP S  EI+ DPFHAVFYL FIL++CALFSKTWIEVSG+SA+DVAKQLRD++MVMKGHRDSAL+H LNRYIP AAAFGGMCIGAL+V+ADF+GAIG+GTGILL+VTIIYQ+YE F+K
Sbjct:    1 MRFLHLIRPVMAFLPEVQSP-DRKIPFREKLLWTAITLFIFLVCCQIPLYGVQSATSSDPFYWMRVILASNRGTLMELGISPIVTSGLVMQLLAGSRIIEVDYNVKEDRALFSGAQKLFGILITTGEAIAYVVSGMYGDLGSIGAGNAILIIAQLFCAGLIVLTLDELLQKGYGLGSGISLFIATNICENIVWKAFSPTTINTGRGTEFEGAIIALFHLLITRSNKVRALQEALYRQNLPNLTNLLATVLIFVIVIYFQGWRVDLPVKYQKYRGQSGTYPIKLFYTSNMPIILQTALVSNLYFVSQLLYNRAPTNILVRLLGKWQEAEGRAGTKIPVGGIAYYISPPSSFAEIIYDPFHAVFYLTFILTACALFSKTWIEVSGASARDVAKQLRDNQMVMKGHRDSALIHVLNRYIPTAAAFGGMCIGALSVIADFMGAIGTGTGILLSVTIIYQFYEAFVK 461          
BLAST of EWM24615.1 vs. NCBI_GenBank
Match: gi|224011567|ref|XP_002295558.1| (protein translocase complex subunit [Thalassiosira pseudonana CCMP1335] >gi|209583589|gb|ACI64275.1| protein translocase complex subunit [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 810.831 bits (2093), Expect = 0.000e+0
Identity = 387/462 (83.77%), Postives = 433/462 (93.72%), Query Frame = 0
Query:    2 VRFLHLIRPVLCIVPEVAAPVDRKIPFREKVLWTVVTLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGISPIVTSGLVMQLLAGSRIIEVNQSLKEDRALFSGAQKLFGILITIGEAVAYVFSGMYGDLNSLGWGNAILIIAQLFIAGMIVITLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINTGRGTEFEGAIIALFHLLITRSDKMRALKEAFYRQNLPNVTNLLATVLVFIIVIYFQGWRVDLPVKSQRYRGQQGTYPIKLFYTSNMPIILQTALVSNLYFLSQLLHKRFSGNILVRLLGRWQEVEGQQGQSVPVGGIAYYISPPHSMTEILSDPFHAVFYLAFILSSCALFSKTWIEVSGSSAKDVAKQLRDSKMVMKGHRDSALVHELNRYIPVAAAFGGMCIGALTVVADFLGAIGSGTGILLAVTIIYQYYEMFMK 463
            +RFLHLIRP++C++PEV  P DRKIPFREKVLWT +TLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGISPIVTSGLVMQLLAGSRIIEVN ++KEDRALF+GAQKLFGILIT+GEA+AYV SGMYGDL S+G GNA+LIIAQLF +G+IV+TLDELLQKGYGLGSGISLFIATNICENI+WKAFSPTTINTGRGTEFEGAIIALFHLLITR+DK+RA+KEA  RQNLPN+TNL AT+ VF++VIYFQGWRV LPVK Q+YRGQ+GTYPIKLFYTSNMPIILQTALVSNLYF+SQLL+ R   NILVR+LG+WQ+VEG  GQ++PVGGIAYYISPP S  EI+ DPFHAVFYL FIL++CALFSKTWIEVSG+SA+DVAKQLRD++MVMKGHRDSAL+H LNRYIP AAAFGGMCIGALTV+ADF+GAIG+GTGILL+VTIIYQ+YE FMK
Sbjct:    1 MRFLHLIRPMMCVLPEVQNP-DRKIPFREKVLWTTITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGISPIVTSGLVMQLLAGSRIIEVNYNVKEDRALFAGAQKLFGILITVGEAIAYVVSGMYGDLGSIGAGNALLIIAQLFCSGLIVLTLDELLQKGYGLGSGISLFIATNICENIVWKAFSPTTINTGRGTEFEGAIIALFHLLITRNDKVRAIKEALNRQNLPNLTNLAATMFVFVVVIYFQGWRVVLPVKYQKYRGQEGTYPIKLFYTSNMPIILQTALVSNLYFVSQLLYNRAPTNILVRILGKWQDVEG-GGQTIPVGGIAYYISPPTSFAEIIYDPFHAVFYLVFILTACALFSKTWIEVSGASARDVAKQLRDNQMVMKGHRDSALIHVLNRYIPTAAAFGGMCIGALTVIADFMGAIGTGTGILLSVTIIYQFYEAFMK 460          
BLAST of EWM24615.1 vs. NCBI_GenBank
Match: gi|1072237998|gb|OEU22725.1| (protein translocase complex subunit [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 809.29 bits (2089), Expect = 0.000e+0
Identity = 385/464 (82.97%), Postives = 434/464 (93.53%), Query Frame = 0
Query:    2 VRFLHLIRPVLCIVPEVAAPVDRKIPFREKVLWTVVTLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGISPIVTSGLVMQLLAGSRIIEVNQSLKEDRALFSGAQKLFGILITIGEAVAYVFSGMYGDLNSLGWGNAILIIAQLFIAGMIVITLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINTGRGTEFEGAIIALFHLLITRSDKMRALKEAFYRQNLPNVTNLLATVLVFIIVIYFQGWRVDLPVKSQRYRGQQGTYPIKLFYTSNMPIILQTALVSNLYFLSQLLHKRFSGNILVRLLGRWQEVEGQQGQSVPVGGIAYYISPPHSMTEILSDPFHAVFYLAFILSSCALFSKTWIEVSGSSAKDVAKQLRDSKMVMKGHRDSALVHELNRYIPVAAAFGGMCIGALTVVADFLGAIGSGTGILLAVTIIYQYYEMFMKGE 465
            +RFLHLIRPV+ ++PEV AP DRKIPFREK+LWT +TLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGISPIVTSGLVMQLLAGSRIIEV+ ++KEDRALFSGAQKLFG+LIT+GEA+AYV SGMYGD++S+G GNAILII QLF +G+IV+TLDELLQKGYGLGSGIS+FIATNICE I+WKAFSPTT+NTGRGTEFEGAIIALFHLLITR+DK++AL+EA YRQNLPN+TNLLATVL+F+IVIYFQGWRVDLPVK Q+YRGQQG YPIKLFYTSNMPIILQTALVSNLYF+SQLL+ R   N+LVRLLG+WQ+VEG  GQ +PVGGIAYYISPP S  EI+ DPFHAVFYL FIL++CALFSKTWIEVSGSSA+DVAKQLRD++MVMKGHRDS+L+H LNRYIP AAAFGGMCIGAL+V+ADF+GAIGSGTGILL+VTII+Q YE FMK +
Sbjct:    1 MRFLHLIRPVMAVLPEVEAP-DRKIPFREKLLWTSITLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGISPIVTSGLVMQLLAGSRIIEVDYNVKEDRALFSGAQKLFGLLITLGEAIAYVASGMYGDISSIGAGNAILIIFQLFCSGLIVLTLDELLQKGYGLGSGISIFIATNICETIVWKAFSPTTLNTGRGTEFEGAIIALFHLLITRNDKVKALREALYRQNLPNLTNLLATVLIFVIVIYFQGWRVDLPVKYQKYRGQQGNYPIKLFYTSNMPIILQTALVSNLYFVSQLLYNRAPTNVLVRLLGQWQDVEGSMGQKIPVGGIAYYISPPTSFAEIIYDPFHAVFYLTFILTACALFSKTWIEVSGSSARDVAKQLRDNQMVMKGHRDSSLIHVLNRYIPTAAAFGGMCIGALSVIADFMGAIGSGTGILLSVTIIFQLYENFMKEQ 463          
BLAST of EWM24615.1 vs. NCBI_GenBank
Match: gi|1173933338|gb|OQR85142.1| (protein transporter Sec61 subunit alpha [Achlya hypogyna])

HSP 1 Score: 808.905 bits (2088), Expect = 0.000e+0
Identity = 387/475 (81.47%), Postives = 436/475 (91.79%), Query Frame = 0
Query:    2 VRFLHLIRPVLCIVPEVAAPVDRKIPFREKVLWTVVTLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGISPIVTSGLVMQLLAGSRIIEVNQSLKEDRALFSGAQKLFGILITIGEAVAYVFSGMYGDLNSLGWGNAILIIAQLFIAGMIVITLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINTGRGTEFEGAIIALFHLLITRSDKMRALKEAFYRQNLPNVTNLLATVLVFIIVIYFQGWRVDLPVKSQRYRGQQGTYPIKLFYTSNMPIILQTALVSNLYFLSQLLHKRFSGNILVRLLGRWQEVEGQQGQSVPVGGIAYYISPPHSMTEILSDPFHAVFYLAFILSSCALFSKTWIEVSGSSAKDVAKQLRDSKMVMKGHRDSALVHELNRYIPVAAAFGGMCIGALTVVADFLGAIGSGTGILLAVTIIYQYYEMFMKGEVLCDRKFRRHF 476
            +RFLHLIRPV+C++PEVA P DRKIPFREKVLW+V+TLFIFLVCCQIP+YG+Q++KSSDP YWMRVILASNRGTLMELGISPIVTSGLVMQ+LAGS++IEV+QSLKEDRALFSGAQKLFGILIT+G+A+AYV SGMYGD+  +G GNAILII QLF AG+++I LDE+LQKGYGLGSGISLFIATNICE+I+WKAFSPTTINTGRGTEFEGAIIALFHLLITRSDKMRALKEAFYRQNLPNVTNLLAT+LVFI+VIYFQG+R+DLPVK QRYRGQQGTYPIKLFYTSNMPIILQTALVSNLYF+SQLL+K+F GN LV LLG+WQ+VEG  GQS+PVGG+AYY+S P S  +IL DP  AV Y+AFIL SCALFSKTWIE+SGSSA+DVAKQLRD +MVMKGHRD+++VH LNRYIP AAAFGGMCIGAL++VADFLGAIGSGTGILLAVTIIYQY+E F K +   D  F   F
Sbjct:    1 MRFLHLIRPVMCVLPEVAQP-DRKIPFREKVLWSVITLFIFLVCCQIPLYGIQTSKSSDPLYWMRVILASNRGTLMELGISPIVTSGLVMQMLAGSKMIEVDQSLKEDRALFSGAQKLFGILITVGQAIAYVASGMYGDIGEIGAGNAILIIIQLFFAGILIIILDEMLQKGYGLGSGISLFIATNICESIVWKAFSPTTINTGRGTEFEGAIIALFHLLITRSDKMRALKEAFYRQNLPNVTNLLATILVFIVVIYFQGFRIDLPVKYQRYRGQQGTYPIKLFYTSNMPIILQTALVSNLYFVSQLLYKKFGGNFLVGLLGKWQDVEGGGGQSIPVGGLAYYMSAPSSAAQILYDPIRAVIYVAFILGSCALFSKTWIEISGSSARDVAKQLRDQQMVMKGHRDASIVHVLNRYIPTAAAFGGMCIGALSMVADFLGAIGSGTGILLAVTIIYQYFETFAKEQ--ADIPFSGMF 472          
BLAST of EWM24615.1 vs. NCBI_GenBank
Match: gi|669150952|ref|XP_008611038.1| (protein transporter Sec61 subunit alpha [Saprolegnia diclina VS20] >gi|530737479|gb|EQC35721.1| protein transporter Sec61 subunit alpha [Saprolegnia diclina VS20])

HSP 1 Score: 806.979 bits (2083), Expect = 0.000e+0
Identity = 384/462 (83.12%), Postives = 430/462 (93.07%), Query Frame = 0
Query:    2 VRFLHLIRPVLCIVPEVAAPVDRKIPFREKVLWTVVTLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGISPIVTSGLVMQLLAGSRIIEVNQSLKEDRALFSGAQKLFGILITIGEAVAYVFSGMYGDLNSLGWGNAILIIAQLFIAGMIVITLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINTGRGTEFEGAIIALFHLLITRSDKMRALKEAFYRQNLPNVTNLLATVLVFIIVIYFQGWRVDLPVKSQRYRGQQGTYPIKLFYTSNMPIILQTALVSNLYFLSQLLHKRFSGNILVRLLGRWQEVEGQQGQSVPVGGIAYYISPPHSMTEILSDPFHAVFYLAFILSSCALFSKTWIEVSGSSAKDVAKQLRDSKMVMKGHRDSALVHELNRYIPVAAAFGGMCIGALTVVADFLGAIGSGTGILLAVTIIYQYYEMFMK 463
            +RFLHLIRPV+C++PEVA P DRKIPFREKVLW+V+TLFIFLVCCQIP+YG+Q++KSSDP YWMRVILASNRGTLMELGISPIVTSGLVMQ+LAGS++IEV+QSLKEDRALFSGAQKLFGILIT+G+A+AYV SGMYGD+  +G GNAILII QLF AG++VI LDE+LQKGYGLGSGISLFIATNICE+I+WKAFSPTTINTGRGTEFEGAIIALFHLLITRSDKMRALKEAFYRQNLPNVTNLLAT+LVFI+VIYFQG+R+DLPVK QRYRGQQGTYPIKLFYTSNMPIILQTALVSNLYF+SQLL K+F GN LV LLG+WQ+VEG  GQS+PVGG+AYY+S P S  +IL DP  AV Y+ FIL SCALFSKTWIE+SGSSA+DVAKQLRD +MVMKGHRD+++VH LNRYIP AAAFGGMCIGAL++VADFLGAIGSGTGILLAVTIIYQY+E F K
Sbjct:    1 MRFLHLIRPVMCVLPEVAQP-DRKIPFREKVLWSVITLFIFLVCCQIPLYGIQTSKSSDPLYWMRVILASNRGTLMELGISPIVTSGLVMQMLAGSKMIEVDQSLKEDRALFSGAQKLFGILITVGQAIAYVASGMYGDIGEIGAGNAILIIIQLFFAGILVIILDEMLQKGYGLGSGISLFIATNICESIVWKAFSPTTINTGRGTEFEGAIIALFHLLITRSDKMRALKEAFYRQNLPNVTNLLATILVFIVVIYFQGFRIDLPVKYQRYRGQQGTYPIKLFYTSNMPIILQTALVSNLYFVSQLLFKKFGGNFLVGLLGKWQDVEGGGGQSIPVGGLAYYMSAPSSAAQILYDPIRAVIYVVFILGSCALFSKTWIEISGSSARDVAKQLRDQQMVMKGHRDASIVHVLNRYIPTAAAFGGMCIGALSMVADFLGAIGSGTGILLAVTIIYQYFETFAK 461          
BLAST of EWM24615.1 vs. NCBI_GenBank
Match: gi|1173946573|gb|OQR95088.1| (transporter Sec61 subunit alpha [Thraustotheca clavata])

HSP 1 Score: 796.964 bits (2057), Expect = 0.000e+0
Identity = 376/462 (81.39%), Postives = 430/462 (93.07%), Query Frame = 0
Query:    2 VRFLHLIRPVLCIVPEVAAPVDRKIPFREKVLWTVVTLFIFLVCCQIPIYGVQSAKSSDPFYWMRVILASNRGTLMELGISPIVTSGLVMQLLAGSRIIEVNQSLKEDRALFSGAQKLFGILITIGEAVAYVFSGMYGDLNSLGWGNAILIIAQLFIAGMIVITLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINTGRGTEFEGAIIALFHLLITRSDKMRALKEAFYRQNLPNVTNLLATVLVFIIVIYFQGWRVDLPVKSQRYRGQQGTYPIKLFYTSNMPIILQTALVSNLYFLSQLLHKRFSGNILVRLLGRWQEVEGQQGQSVPVGGIAYYISPPHSMTEILSDPFHAVFYLAFILSSCALFSKTWIEVSGSSAKDVAKQLRDSKMVMKGHRDSALVHELNRYIPVAAAFGGMCIGALTVVADFLGAIGSGTGILLAVTIIYQYYEMFMK 463
            +RFLHLIRPV+C++PEVA P DRKIPFREKVLW+V+TLFIFLVCCQIP+YG+Q++KSSDP YW+RV+LASNRGTLMELGISPIVTSGLVMQ+LAGS++IEV+Q+LKEDRALFSGAQKLFGILIT+G+A+AYV SGMYGD+  +G  NAILI+ QLF AG+++I LDE+LQKGYGLGSGISLFIATNICE+I+WKAFSPTTINTGRGTEFEGAIIALFHLLITRSDKMRALKEAFYRQNLPN+TNLLATVLVFI+VIYFQG+R+DLPVK QRYRGQQGTYPIKLFYTSNMPIILQTALVSNLYF+SQLL+K+F GN LV LLG+WQ+VEG  GQS+PVGG+AYY+S P S  +IL DP  A+ Y+ FIL SCALFSKTWIE+SGSSA+DVAKQLRD +MVMKGHRD+++V+ LNRYIP AAAFGGMCIGAL++VADFLGAIGSGTGILLAVTIIYQY+E F K
Sbjct:    1 MRFLHLIRPVMCVLPEVAQP-DRKIPFREKVLWSVITLFIFLVCCQIPLYGIQTSKSSDPLYWIRVVLASNRGTLMELGISPIVTSGLVMQMLAGSKMIEVDQNLKEDRALFSGAQKLFGILITVGQAIAYVASGMYGDIGEMGAVNAILIVIQLFFAGILIIILDEMLQKGYGLGSGISLFIATNICESIVWKAFSPTTINTGRGTEFEGAIIALFHLLITRSDKMRALKEAFYRQNLPNITNLLATVLVFIVVIYFQGFRIDLPVKYQRYRGQQGTYPIKLFYTSNMPIILQTALVSNLYFVSQLLYKKFGGNFLVGLLGKWQDVEGGGGQSIPVGGLAYYMSAPSSAAQILYDPLRAIIYVVFILGSCALFSKTWIEISGSSARDVAKQLRDQQMVMKGHRDASIVNVLNRYIPTAAAFGGMCIGALSMVADFLGAIGSGTGILLAVTIIYQYFETFAK 461          
The following BLAST results are available for this feature:
BLAST of EWM24615.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106132|gb|EWM24615.1|0.000e+0100.00protein transport protein sec61 subunit alpha [Nan... [more]
gi|298710680|emb|CBJ32105.1|0.000e+087.72putative Sec61/secY [Ectocarpus siliculosus][more]
gi|219129623|ref|XP_002184983.1|0.000e+084.48transport protein Sec61 alpha subunit [Phaeodactyl... [more]
gi|1210522776|dbj|GAX18472.1|0.000e+083.41protein transport protein SEC61 subunit alpha [Fis... [more]
gi|944186151|dbj|BAT25244.1|0.000e+084.20Sec61alpha [Nitzschia sp. IriIs04][more]
gi|224011567|ref|XP_002295558.1|0.000e+083.77protein translocase complex subunit [Thalassiosira... [more]
gi|1072237998|gb|OEU22725.1|0.000e+082.97protein translocase complex subunit [Fragilariopsi... [more]
gi|1173933338|gb|OQR85142.1|0.000e+081.47protein transporter Sec61 subunit alpha [Achlya hy... [more]
gi|669150952|ref|XP_008611038.1|0.000e+083.12protein transporter Sec61 subunit alpha [Saprolegn... [more]
gi|1173946573|gb|OQR95088.1|0.000e+081.39transporter Sec61 subunit alpha [Thraustotheca cla... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6074rna6074Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications