EWM24624.1, cds6047 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24624.1 vs. NCBI_GenBank
Match: gi|585106144|gb|EWM24624.1| (Ubiquitin interacting protein [Nannochloropsis gaditana]) HSP 1 Score: 1446.03 bits (3742), Expect = 0.000e+0 Identity = 700/700 (100.00%), Postives = 700/700 (100.00%), Query Frame = 0
Query: 1 MSNWQRVGRRGKAERRAIQHDVPRPSDETREPLSAIMSRRLREDPCYDEEDKLGSVLQTSIWSQSSDPQLQRAIEESLRSGLPEETHMPGPRTTWPRAVLKAETDEVEQLATGKEEDATGWAALSVENVDPSPAGGDEEEEMVALALKASMELREQEAHRSWNETNHAEEAHTAEGPKRRGSRDTLGHTIASGPASDAGTAPSHELSHATSLHSYASMARPPNGTAGHDGGAGGGSSVGGHFRPSAGDDRRYAASCETPSISPCVGEPASSGINVSAILSPTPVSTGTSDDDISMNKQAVAKAVEGSGACLVHCPAPPLAAVSSSIAMNAQASTFDDMLAQALEESLELGREQARREEERNRAEAQAGGAEMAKVAVMASVHEDVGRRMTGSPGRTGAVKSRQGLAKTTTGLAWTVKNVEEVLEVRPEQRGNLRVLVGTEGQYLQHIRASWGLDVRILDDDTEIRIRFAASSQGRALFGGEEGSEEEQENQLVGFKADLSHILNDPQRLIEERLSRYVHVLIDWSNIVFSAGSGSTPDLSHGVDAKRFAALLEQDENVMTKFMATSTHPLLDPGTDMFRQLGYVTRVEARGKEGFVDGSLQLKLMEVATKEFRHKAQHMIRLATGDGNMHDEHGRKDHERACFPKMVEDALRNGYKVELWTWRRSCSHKYFEMLQYYHPRFMIQFCDNFRDFIFPGVSTR 700
MSNWQRVGRRGKAERRAIQHDVPRPSDETREPLSAIMSRRLREDPCYDEEDKLGSVLQTSIWSQSSDPQLQRAIEESLRSGLPEETHMPGPRTTWPRAVLKAETDEVEQLATGKEEDATGWAALSVENVDPSPAGGDEEEEMVALALKASMELREQEAHRSWNETNHAEEAHTAEGPKRRGSRDTLGHTIASGPASDAGTAPSHELSHATSLHSYASMARPPNGTAGHDGGAGGGSSVGGHFRPSAGDDRRYAASCETPSISPCVGEPASSGINVSAILSPTPVSTGTSDDDISMNKQAVAKAVEGSGACLVHCPAPPLAAVSSSIAMNAQASTFDDMLAQALEESLELGREQARREEERNRAEAQAGGAEMAKVAVMASVHEDVGRRMTGSPGRTGAVKSRQGLAKTTTGLAWTVKNVEEVLEVRPEQRGNLRVLVGTEGQYLQHIRASWGLDVRILDDDTEIRIRFAASSQGRALFGGEEGSEEEQENQLVGFKADLSHILNDPQRLIEERLSRYVHVLIDWSNIVFSAGSGSTPDLSHGVDAKRFAALLEQDENVMTKFMATSTHPLLDPGTDMFRQLGYVTRVEARGKEGFVDGSLQLKLMEVATKEFRHKAQHMIRLATGDGNMHDEHGRKDHERACFPKMVEDALRNGYKVELWTWRRSCSHKYFEMLQYYHPRFMIQFCDNFRDFIFPGVSTR
Sbjct: 1 MSNWQRVGRRGKAERRAIQHDVPRPSDETREPLSAIMSRRLREDPCYDEEDKLGSVLQTSIWSQSSDPQLQRAIEESLRSGLPEETHMPGPRTTWPRAVLKAETDEVEQLATGKEEDATGWAALSVENVDPSPAGGDEEEEMVALALKASMELREQEAHRSWNETNHAEEAHTAEGPKRRGSRDTLGHTIASGPASDAGTAPSHELSHATSLHSYASMARPPNGTAGHDGGAGGGSSVGGHFRPSAGDDRRYAASCETPSISPCVGEPASSGINVSAILSPTPVSTGTSDDDISMNKQAVAKAVEGSGACLVHCPAPPLAAVSSSIAMNAQASTFDDMLAQALEESLELGREQARREEERNRAEAQAGGAEMAKVAVMASVHEDVGRRMTGSPGRTGAVKSRQGLAKTTTGLAWTVKNVEEVLEVRPEQRGNLRVLVGTEGQYLQHIRASWGLDVRILDDDTEIRIRFAASSQGRALFGGEEGSEEEQENQLVGFKADLSHILNDPQRLIEERLSRYVHVLIDWSNIVFSAGSGSTPDLSHGVDAKRFAALLEQDENVMTKFMATSTHPLLDPGTDMFRQLGYVTRVEARGKEGFVDGSLQLKLMEVATKEFRHKAQHMIRLATGDGNMHDEHGRKDHERACFPKMVEDALRNGYKVELWTWRRSCSHKYFEMLQYYHPRFMIQFCDNFRDFIFPGVSTR 700
BLAST of EWM24624.1 vs. NCBI_GenBank
Match: gi|551553483|ref|XP_005764049.1| (hypothetical protein EMIHUDRAFT_214477 [Emiliania huxleyi CCMP1516] >gi|485613610|gb|EOD11620.1| hypothetical protein EMIHUDRAFT_214477 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 72.4034 bits (176), Expect = 1.678e-9 Identity = 54/173 (31.21%), Postives = 83/173 (47.98%), Query Frame = 0
Query: 518 VHVLIDWSNIVFSAGSGSTPDLSHGVDAKRFAALLEQDENVMTKFMATSTHPLLDPGTDMFRQLGYVTRVEAR-GKEGFVDGSLQLKLMEVATKEFRHKAQHMIRLATGDGNMHDEHGRKDHERACFPKMVEDALRNGYKVELWTWRRSCSHKYFEMLQYYHPRFMIQFCDNF 689
VH+ +D +NI F S S ++ AA +E+ +V + + S + ++ Q GY + R G++ FVD +L +LM+ ATK F I L TGDGN ++ R FP +E AL++G++VEL TWR + + Y + Y F I F D
Sbjct: 535 VHIFVDDANI-FGRTSQSLFSIAQ------LAACVERGRDVEERVVIGSGTS--ERARGLWEQQGYRVDTDPRPGRQRFVDEALHARLMQTATKSF--GPPRTIALVTGDGN-------RNEGRTSFPACIEIALKHGWRVELHTWRATMNRIYHQFEGEYGSFFRIHFLDTL 689
BLAST of EWM24624.1 vs. NCBI_GenBank
Match: gi|639543245|ref|WP_024691616.1| (hypothetical protein [Pseudomonas syringae]) HSP 1 Score: 67.0106 bits (162), Expect = 6.144e-9 Identity = 60/188 (31.91%), Postives = 86/188 (45.74%), Query Frame = 0
Query: 519 HVLIDWSNIVFSAG--SG----STPDLSHGVDAKRFAALLEQDENVMTKFMATSTHPLLDPGTDMFRQ-----------LGYVTRVEARGKEGFVDGSLQLKLMEVATKEFRHKAQHMIRLATGDGNMHDEHGRKDHERACFPKMVEDALRNGYKVELWTWRRSCSHKYFEMLQYYHPRFMIQFCDNF 689
HV ID SNI A SG S P L+ V K LLE +V T+ +A S L PG + Q L V + + R +E VD + LK++EV +F + +ATGDGN+ + + FP V AL+ G+ V+LWTWR S Y + + + F I++ D +
Sbjct: 4 HVFIDNSNIFGGAQELSGKKEPSVPTLAVRVYYKNLFKLLEHGLDVKTRMLAGS----LPPGNEALWQHSKDANYDTDLLRRVEKDDGRIQEQGVDELVHLKILEVVC-DF---PPGRLVIATGDGNISEFN-------TSFPAQVSRALKKGWSVDLWTWRAQLSSAYLPVKKEFDSTFEIKYLDGY 176
BLAST of EWM24624.1 vs. NCBI_GenBank
Match: gi|1016512808|ref|WP_063093738.1| (MULTISPECIES: hypothetical protein [Thalassospira] >gi|1016457534|gb|KZD02952.1| hypothetical protein AUP40_18860 [Thalassospira xiamenensis] >gi|1016463152|gb|KZD08448.1| hypothetical protein AUP45_16160 [Thalassospira xiamenensis] >gi|1046351769|gb|OCK08221.1| hypothetical protein KO164_2399 [Thalassospira sp. KO164] >gi|1089031458|emb|SEE40333.1| hypothetical protein SAMN04515623_2420 [Thalassospira sp. KO164]) HSP 1 Score: 61.2326 bits (147), Expect = 6.262e-7 Identity = 56/186 (30.11%), Postives = 80/186 (43.01%), Query Frame = 0
Query: 518 VHVLIDWSNI------VFSAGSGSTPDLSHGVDAKRFAALLEQDENVMTKFMATSTHPLLDPGTDMFRQLG----YVTRVE--ARGKEGFVDGSLQLKLMEVATKEFRHKAQHMIRLATGDGNMHDEHGRKDHERACFPKMVEDALRNGYKVELWTWRRSCSHKYFEMLQYYHPRFMIQFCDNFRD 691
+HV D SN+ + S P + K +L+E V TK MA S P D + + LG + RVE AR +E VD L LK +A H A + + +GDG++ E G F VE AL+ G+K E+W+W S KY+E+ + I D + D
Sbjct: 3 IHVFFDNSNVWGGAQNIRSEKEPHVPWFLLRIYYKNIFSLVEGGREVKTKVMAGSVPPECDQLWENAKGLGCDVDLLHRVEDGARVREQGVDELLHLK---IANAILDHDAPQTLVVVSGDGSI-SEFG------TGFITQVERALKKGWKAEIWSWSNSLKSKYYELRDLHQDTVSINTFDEYYD 178 The following BLAST results are available for this feature:
BLAST of EWM24624.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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