EWM24624.1, cds6047 (CDS) Nannochloropsis gaditana

Overview
NameEWM24624.1
Unique Namecds6047
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:469941..469942 +
Alignment locationCM002467.1:470116..470177 +
Alignment locationCM002467.1:470431..470634 +
Alignment locationCM002467.1:470808..472642 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24624.1
ProductUbiquitin interacting protein
Orig transcript idgnl|cribi|Naga_100117g11.403.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:469941..469942 +
CM002467.1supercontigCM002467.1:470116..470177 +
CM002467.1supercontigCM002467.1:470431..470634 +
CM002467.1supercontigCM002467.1:470808..472642 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR003903UIM_dom
Homology
BLAST of EWM24624.1 vs. NCBI_GenBank
Match: gi|585106144|gb|EWM24624.1| (Ubiquitin interacting protein [Nannochloropsis gaditana])

HSP 1 Score: 1446.03 bits (3742), Expect = 0.000e+0
Identity = 700/700 (100.00%), Postives = 700/700 (100.00%), Query Frame = 0
Query:    1 MSNWQRVGRRGKAERRAIQHDVPRPSDETREPLSAIMSRRLREDPCYDEEDKLGSVLQTSIWSQSSDPQLQRAIEESLRSGLPEETHMPGPRTTWPRAVLKAETDEVEQLATGKEEDATGWAALSVENVDPSPAGGDEEEEMVALALKASMELREQEAHRSWNETNHAEEAHTAEGPKRRGSRDTLGHTIASGPASDAGTAPSHELSHATSLHSYASMARPPNGTAGHDGGAGGGSSVGGHFRPSAGDDRRYAASCETPSISPCVGEPASSGINVSAILSPTPVSTGTSDDDISMNKQAVAKAVEGSGACLVHCPAPPLAAVSSSIAMNAQASTFDDMLAQALEESLELGREQARREEERNRAEAQAGGAEMAKVAVMASVHEDVGRRMTGSPGRTGAVKSRQGLAKTTTGLAWTVKNVEEVLEVRPEQRGNLRVLVGTEGQYLQHIRASWGLDVRILDDDTEIRIRFAASSQGRALFGGEEGSEEEQENQLVGFKADLSHILNDPQRLIEERLSRYVHVLIDWSNIVFSAGSGSTPDLSHGVDAKRFAALLEQDENVMTKFMATSTHPLLDPGTDMFRQLGYVTRVEARGKEGFVDGSLQLKLMEVATKEFRHKAQHMIRLATGDGNMHDEHGRKDHERACFPKMVEDALRNGYKVELWTWRRSCSHKYFEMLQYYHPRFMIQFCDNFRDFIFPGVSTR 700
            MSNWQRVGRRGKAERRAIQHDVPRPSDETREPLSAIMSRRLREDPCYDEEDKLGSVLQTSIWSQSSDPQLQRAIEESLRSGLPEETHMPGPRTTWPRAVLKAETDEVEQLATGKEEDATGWAALSVENVDPSPAGGDEEEEMVALALKASMELREQEAHRSWNETNHAEEAHTAEGPKRRGSRDTLGHTIASGPASDAGTAPSHELSHATSLHSYASMARPPNGTAGHDGGAGGGSSVGGHFRPSAGDDRRYAASCETPSISPCVGEPASSGINVSAILSPTPVSTGTSDDDISMNKQAVAKAVEGSGACLVHCPAPPLAAVSSSIAMNAQASTFDDMLAQALEESLELGREQARREEERNRAEAQAGGAEMAKVAVMASVHEDVGRRMTGSPGRTGAVKSRQGLAKTTTGLAWTVKNVEEVLEVRPEQRGNLRVLVGTEGQYLQHIRASWGLDVRILDDDTEIRIRFAASSQGRALFGGEEGSEEEQENQLVGFKADLSHILNDPQRLIEERLSRYVHVLIDWSNIVFSAGSGSTPDLSHGVDAKRFAALLEQDENVMTKFMATSTHPLLDPGTDMFRQLGYVTRVEARGKEGFVDGSLQLKLMEVATKEFRHKAQHMIRLATGDGNMHDEHGRKDHERACFPKMVEDALRNGYKVELWTWRRSCSHKYFEMLQYYHPRFMIQFCDNFRDFIFPGVSTR
Sbjct:    1 MSNWQRVGRRGKAERRAIQHDVPRPSDETREPLSAIMSRRLREDPCYDEEDKLGSVLQTSIWSQSSDPQLQRAIEESLRSGLPEETHMPGPRTTWPRAVLKAETDEVEQLATGKEEDATGWAALSVENVDPSPAGGDEEEEMVALALKASMELREQEAHRSWNETNHAEEAHTAEGPKRRGSRDTLGHTIASGPASDAGTAPSHELSHATSLHSYASMARPPNGTAGHDGGAGGGSSVGGHFRPSAGDDRRYAASCETPSISPCVGEPASSGINVSAILSPTPVSTGTSDDDISMNKQAVAKAVEGSGACLVHCPAPPLAAVSSSIAMNAQASTFDDMLAQALEESLELGREQARREEERNRAEAQAGGAEMAKVAVMASVHEDVGRRMTGSPGRTGAVKSRQGLAKTTTGLAWTVKNVEEVLEVRPEQRGNLRVLVGTEGQYLQHIRASWGLDVRILDDDTEIRIRFAASSQGRALFGGEEGSEEEQENQLVGFKADLSHILNDPQRLIEERLSRYVHVLIDWSNIVFSAGSGSTPDLSHGVDAKRFAALLEQDENVMTKFMATSTHPLLDPGTDMFRQLGYVTRVEARGKEGFVDGSLQLKLMEVATKEFRHKAQHMIRLATGDGNMHDEHGRKDHERACFPKMVEDALRNGYKVELWTWRRSCSHKYFEMLQYYHPRFMIQFCDNFRDFIFPGVSTR 700          
BLAST of EWM24624.1 vs. NCBI_GenBank
Match: gi|551553483|ref|XP_005764049.1| (hypothetical protein EMIHUDRAFT_214477 [Emiliania huxleyi CCMP1516] >gi|485613610|gb|EOD11620.1| hypothetical protein EMIHUDRAFT_214477 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 72.4034 bits (176), Expect = 1.678e-9
Identity = 54/173 (31.21%), Postives = 83/173 (47.98%), Query Frame = 0
Query:  518 VHVLIDWSNIVFSAGSGSTPDLSHGVDAKRFAALLEQDENVMTKFMATSTHPLLDPGTDMFRQLGYVTRVEAR-GKEGFVDGSLQLKLMEVATKEFRHKAQHMIRLATGDGNMHDEHGRKDHERACFPKMVEDALRNGYKVELWTWRRSCSHKYFEMLQYYHPRFMIQFCDNF 689
            VH+ +D +NI F   S S   ++        AA +E+  +V  + +  S     +    ++ Q GY    + R G++ FVD +L  +LM+ ATK F       I L TGDGN       ++  R  FP  +E AL++G++VEL TWR + +  Y +    Y   F I F D  
Sbjct:  535 VHIFVDDANI-FGRTSQSLFSIAQ------LAACVERGRDVEERVVIGSGTS--ERARGLWEQQGYRVDTDPRPGRQRFVDEALHARLMQTATKSF--GPPRTIALVTGDGN-------RNEGRTSFPACIEIALKHGWRVELHTWRATMNRIYHQFEGEYGSFFRIHFLDTL 689          
BLAST of EWM24624.1 vs. NCBI_GenBank
Match: gi|639543245|ref|WP_024691616.1| (hypothetical protein [Pseudomonas syringae])

HSP 1 Score: 67.0106 bits (162), Expect = 6.144e-9
Identity = 60/188 (31.91%), Postives = 86/188 (45.74%), Query Frame = 0
Query:  519 HVLIDWSNIVFSAG--SG----STPDLSHGVDAKRFAALLEQDENVMTKFMATSTHPLLDPGTDMFRQ-----------LGYVTRVEARGKEGFVDGSLQLKLMEVATKEFRHKAQHMIRLATGDGNMHDEHGRKDHERACFPKMVEDALRNGYKVELWTWRRSCSHKYFEMLQYYHPRFMIQFCDNF 689
            HV ID SNI   A   SG    S P L+  V  K    LLE   +V T+ +A S    L PG +   Q           L  V + + R +E  VD  + LK++EV   +F       + +ATGDGN+ + +         FP  V  AL+ G+ V+LWTWR   S  Y  + + +   F I++ D +
Sbjct:    4 HVFIDNSNIFGGAQELSGKKEPSVPTLAVRVYYKNLFKLLEHGLDVKTRMLAGS----LPPGNEALWQHSKDANYDTDLLRRVEKDDGRIQEQGVDELVHLKILEVVC-DF---PPGRLVIATGDGNISEFN-------TSFPAQVSRALKKGWSVDLWTWRAQLSSAYLPVKKEFDSTFEIKYLDGY 176          
BLAST of EWM24624.1 vs. NCBI_GenBank
Match: gi|1016512808|ref|WP_063093738.1| (MULTISPECIES: hypothetical protein [Thalassospira] >gi|1016457534|gb|KZD02952.1| hypothetical protein AUP40_18860 [Thalassospira xiamenensis] >gi|1016463152|gb|KZD08448.1| hypothetical protein AUP45_16160 [Thalassospira xiamenensis] >gi|1046351769|gb|OCK08221.1| hypothetical protein KO164_2399 [Thalassospira sp. KO164] >gi|1089031458|emb|SEE40333.1| hypothetical protein SAMN04515623_2420 [Thalassospira sp. KO164])

HSP 1 Score: 61.2326 bits (147), Expect = 6.262e-7
Identity = 56/186 (30.11%), Postives = 80/186 (43.01%), Query Frame = 0
Query:  518 VHVLIDWSNI------VFSAGSGSTPDLSHGVDAKRFAALLEQDENVMTKFMATSTHPLLDPGTDMFRQLG----YVTRVE--ARGKEGFVDGSLQLKLMEVATKEFRHKAQHMIRLATGDGNMHDEHGRKDHERACFPKMVEDALRNGYKVELWTWRRSCSHKYFEMLQYYHPRFMIQFCDNFRD 691
            +HV  D SN+      + S      P     +  K   +L+E    V TK MA S  P  D   +  + LG     + RVE  AR +E  VD  L LK   +A     H A   + + +GDG++  E G        F   VE AL+ G+K E+W+W  S   KY+E+   +     I   D + D
Sbjct:    3 IHVFFDNSNVWGGAQNIRSEKEPHVPWFLLRIYYKNIFSLVEGGREVKTKVMAGSVPPECDQLWENAKGLGCDVDLLHRVEDGARVREQGVDELLHLK---IANAILDHDAPQTLVVVSGDGSI-SEFG------TGFITQVERALKKGWKAEIWSWSNSLKSKYYELRDLHQDTVSINTFDEYYD 178          
The following BLAST results are available for this feature:
BLAST of EWM24624.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585106144|gb|EWM24624.1|0.000e+0100.00Ubiquitin interacting protein [Nannochloropsis gad... [more]
gi|551553483|ref|XP_005764049.1|1.678e-931.21hypothetical protein EMIHUDRAFT_214477 [Emiliania ... [more]
gi|639543245|ref|WP_024691616.1|6.144e-931.91hypothetical protein [Pseudomonas syringae][more]
gi|1016512808|ref|WP_063093738.1|6.262e-730.11MULTISPECIES: hypothetical protein [Thalassospira]... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6062rna6062Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications