EWM24640.1, cds6030 (CDS) Nannochloropsis gaditana

Overview
NameEWM24640.1
Unique Namecds6030
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:437442..437483 +
Alignment locationCM002467.1:437559..437706 +
Alignment locationCM002467.1:437971..439382 +
Alignment locationCM002467.1:439630..440001 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24640.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100055g9.7324.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:437442..437483 +
CM002467.1supercontigCM002467.1:437559..437706 +
CM002467.1supercontigCM002467.1:437971..439382 +
CM002467.1supercontigCM002467.1:439630..440001 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
Homology
[Close]
BLAST of EWM24640.1 vs. NCBI_GenBank
Match: gi|585106162|gb|EWM24640.1| (hypothetical protein Naga_100055g9 [Nannochloropsis gaditana])

HSP 1 Score: 1365.52 bits (3533), Expect = 0.000e+0
Identity = 657/657 (100.00%), Postives = 657/657 (100.00%), Query Frame = 0 
Query:    1 MQVAERKALSNLPSHVKQEVVSKVRSHIIAAYGKEEKSTSGCRSPRLALLVDRAPESQPAELRVHEMNWGGHPSEFAADRDLMNDSRASASTAGTTASSTSSKFGGSTNQFQVAQPTFAIEADRNGSSGANQCGKFIWPFATEGPVDGGDTSMSSSHERALHPPPLEGGSCRDSGGMDWDNDGNADNTGGEMASMSAAPSFTPPENMETALLLDRITRDDAVSRGIAPDPASLLPLKHNCEEQKSPRVSFVQSGPFGMNTEQFPNHDQPEGRRQHPHPPPLQRQSLQLQQEQQQSNHYPEHHYPAQQELHQMYSSHQSQPVQAQQAQQLSPSSLQPPQHQRRRQSQQQIKATQHQHLAIHHHPTPILPRHDVAIMPKPTPCSPTTLIPPTLVKHESIIRVSGMGSGRTAASDAFCAGSAAKRGTSGAQVMGTSERGMQEEDGMSDERKKRLRNEREQRRAHLITDQIDNLKGVLENSNFPLRSTSKFDILAACDEYIQHLRQRKNCLDLKHKLSGGGAGSPMTGFCKYSKAGIGESPYLVLRRQSAWNSFSNPSPAFFLPLHWTKKIRPTSLPRLRGQRRSPILGTTRLTFCFLLCATKNIARGLFTAVLLHLNAMGKLQRSQRWSRRQQLDLRCDGFLTPRKMFFGQWMDKWKELM 657
            MQVAERKALSNLPSHVKQEVVSKVRSHIIAAYGKEEKSTSGCRSPRLALLVDRAPESQPAELRVHEMNWGGHPSEFAADRDLMNDSRASASTAGTTASSTSSKFGGSTNQFQVAQPTFAIEADRNGSSGANQCGKFIWPFATEGPVDGGDTSMSSSHERALHPPPLEGGSCRDSGGMDWDNDGNADNTGGEMASMSAAPSFTPPENMETALLLDRITRDDAVSRGIAPDPASLLPLKHNCEEQKSPRVSFVQSGPFGMNTEQFPNHDQPEGRRQHPHPPPLQRQSLQLQQEQQQSNHYPEHHYPAQQELHQMYSSHQSQPVQAQQAQQLSPSSLQPPQHQRRRQSQQQIKATQHQHLAIHHHPTPILPRHDVAIMPKPTPCSPTTLIPPTLVKHESIIRVSGMGSGRTAASDAFCAGSAAKRGTSGAQVMGTSERGMQEEDGMSDERKKRLRNEREQRRAHLITDQIDNLKGVLENSNFPLRSTSKFDILAACDEYIQHLRQRKNCLDLKHKLSGGGAGSPMTGFCKYSKAGIGESPYLVLRRQSAWNSFSNPSPAFFLPLHWTKKIRPTSLPRLRGQRRSPILGTTRLTFCFLLCATKNIARGLFTAVLLHLNAMGKLQRSQRWSRRQQLDLRCDGFLTPRKMFFGQWMDKWKELM
Sbjct:    1 MQVAERKALSNLPSHVKQEVVSKVRSHIIAAYGKEEKSTSGCRSPRLALLVDRAPESQPAELRVHEMNWGGHPSEFAADRDLMNDSRASASTAGTTASSTSSKFGGSTNQFQVAQPTFAIEADRNGSSGANQCGKFIWPFATEGPVDGGDTSMSSSHERALHPPPLEGGSCRDSGGMDWDNDGNADNTGGEMASMSAAPSFTPPENMETALLLDRITRDDAVSRGIAPDPASLLPLKHNCEEQKSPRVSFVQSGPFGMNTEQFPNHDQPEGRRQHPHPPPLQRQSLQLQQEQQQSNHYPEHHYPAQQELHQMYSSHQSQPVQAQQAQQLSPSSLQPPQHQRRRQSQQQIKATQHQHLAIHHHPTPILPRHDVAIMPKPTPCSPTTLIPPTLVKHESIIRVSGMGSGRTAASDAFCAGSAAKRGTSGAQVMGTSERGMQEEDGMSDERKKRLRNEREQRRAHLITDQIDNLKGVLENSNFPLRSTSKFDILAACDEYIQHLRQRKNCLDLKHKLSGGGAGSPMTGFCKYSKAGIGESPYLVLRRQSAWNSFSNPSPAFFLPLHWTKKIRPTSLPRLRGQRRSPILGTTRLTFCFLLCATKNIARGLFTAVLLHLNAMGKLQRSQRWSRRQQLDLRCDGFLTPRKMFFGQWMDKWKELM 657
[Close]
BLAST of EWM24640.1 vs. NCBI_GenBank
Match: gi|960351367|gb|ALR84570.1| (bHLH transcription factor 1 [Nannochloropsis salina])

HSP 1 Score: 837.795 bits (2163), Expect = 0.000e+0
Identity = 446/468 (95.30%), Postives = 453/468 (96.79%), Query Frame = 0 
Query:   67 MNWGGHPSEFAADRDLMNDSRASASTAGTTASSTSSKFGGSTNQFQVAQPTFAIEADRNGSSGANQCGKFIWPFATEGPVDGGDTSMSSSHERALHPPPLEGGSCRDSGGMDWDNDGNADNTGGEMASMSAAPSFTPPENMETALLLDRITRDDAVSRGIAPDPASLLPLKHNCEEQKSPRVSFVQSGPFGMNTEQFPNHDQPEGRRQHPHPPPLQRQSLQLQQEQQQSNHYPEHHYPAQQELHQMYSSHQSQPVQAQQAQQLSPSSLQPPQHQRRRQSQQQIKATQHQHLAIHHHPTPILPRHDVAIMPKPTPCSPTTLIPPTLVKHESIIRVSGMGSGRTAASDAFCAGSAAKRGTSGAQVMGTSERGMQEEDGMSDERKKRLRNEREQRRAHLITDQIDNLKGVLENSNFPLRSTSKFDILAACDEYIQHLRQRKNCLDLKHKLSGGGAGSPMTGFCKYSKAGIG 534
            MNWGGHPSEFAADR  MNDSRASASTAGTTASSTSSKFGGSTNQFQ+AQPTFAIEA +NGSS ANQCGKFIWPFATEGPVDGGDTSMSSSHERALHPPPLE GSCRDSGGMDWDNDGNADN GGEMASMSAAPSFTPPENMETALLL    RDDAVSRGIAPDPASLLPLKH CEEQKS RVSFVQSGPFGMNTEQFPNHDQPEGRRQHPHPPP QRQSLQLQQ QQQSNHYPEHHYPAQQEL+QMYSSHQSQP+QAQQAQQLSPSSLQPPQHQRRRQSQQQIKATQHQHLAI HHPTPILPRHDVAIMPKPTPCSPTTLIPPT+VKHESIIRVSGMGSGRTAASDAFCAGSAAKRGTSGAQVMGTSERGMQEEDGMSDERKKRLRNEREQRRAHLITDQID+LKGVLENSNFPLRSTSKFDILAACDEYIQHLRQRKNCLDLKHKLSGGGAGSPMTGFCKY+KAGIG
Sbjct:    1 MNWGGHPSEFAADRGRMNDSRASASTAGTTASSTSSKFGGSTNQFQMAQPTFAIEAAQNGSSDANQCGKFIWPFATEGPVDGGDTSMSSSHERALHPPPLEDGSCRDSGGMDWDNDGNADNAGGEMASMSAAPSFTPPENMETALLLGSSPRDDAVSRGIAPDPASLLPLKHKCEEQKSQRVSFVQSGPFGMNTEQFPNHDQPEGRRQHPHPPPFQRQSLQLQQGQQQSNHYPEHHYPAQQELYQMYSSHQSQPLQAQQAQQLSPSSLQPPQHQRRRQSQQQIKATQHQHLAI-HHPTPILPRHDVAIMPKPTPCSPTTLIPPTVVKHESIIRVSGMGSGRTAASDAFCAGSAAKRGTSGAQVMGTSERGMQEEDGMSDERKKRLRNEREQRRAHLITDQIDSLKGVLENSNFPLRSTSKFDILAACDEYIQHLRQRKNCLDLKHKLSGGGAGSPMTGFCKYNKAGIG 467
The following BLAST results are available for this feature:
BLAST of EWM24640.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585106162|gb|EWM24640.1|0.000e+0100.00hypothetical protein Naga_100055g9 [Nannochloropsi... [more]
gi|960351367|gb|ALR84570.1|0.000e+095.30bHLH transcription factor 1 [Nannochloropsis salin... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6045rna6045Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications