EWM30079.1, cds603 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30079.1 vs. NCBI_GenBank
Match: gi|585112712|gb|EWM30079.1| (major facilitator superfamily mfs_1 [Nannochloropsis gaditana]) HSP 1 Score: 915.22 bits (2364), Expect = 0.000e+0 Identity = 447/447 (100.00%), Postives = 447/447 (100.00%), Query Frame = 0
Query: 1 MDLDLAQTEDAHPLSPSSPAAGSDETKETSLGSQVSSTSLEDTEDVGNEKQEGEKEKDKEEEEVEKEDVEGGSKREKREDILASSTGPAGPDTVETSHASKDTVQKQKNKKKKGGKSRKKREAQRRYGPPHLDRETIKRAKVSMRIIAFFYHLSLSVLVATWTELLLKGFDNNFSKAAAFLGTCQGVERGIQFLTAASLGNLSDCVGRRPVLFASLILNIISTLCVIVKPGPMTVLAYFIISGLSNCILAMLNAIVGDLAAGREELEGGLTQQYGRLGMAIGLAMMVGPMLGPSIQQFNVIYPLYISITLVIICVLICLSMAESLPPQNRHIKLEHSNPLWGLKKAMRYRPFLLFALPFFLSQLSESVYAFIVIYTKQRLGWSYVSVGLYISLLALTIAILQGNLRHIVPRFVSGKSLPPSWPSLPPLIPRLNMRLPTCLPLYTSLS 447
MDLDLAQTEDAHPLSPSSPAAGSDETKETSLGSQVSSTSLEDTEDVGNEKQEGEKEKDKEEEEVEKEDVEGGSKREKREDILASSTGPAGPDTVETSHASKDTVQKQKNKKKKGGKSRKKREAQRRYGPPHLDRETIKRAKVSMRIIAFFYHLSLSVLVATWTELLLKGFDNNFSKAAAFLGTCQGVERGIQFLTAASLGNLSDCVGRRPVLFASLILNIISTLCVIVKPGPMTVLAYFIISGLSNCILAMLNAIVGDLAAGREELEGGLTQQYGRLGMAIGLAMMVGPMLGPSIQQFNVIYPLYISITLVIICVLICLSMAESLPPQNRHIKLEHSNPLWGLKKAMRYRPFLLFALPFFLSQLSESVYAFIVIYTKQRLGWSYVSVGLYISLLALTIAILQGNLRHIVPRFVSGKSLPPSWPSLPPLIPRLNMRLPTCLPLYTSLS
Sbjct: 1 MDLDLAQTEDAHPLSPSSPAAGSDETKETSLGSQVSSTSLEDTEDVGNEKQEGEKEKDKEEEEVEKEDVEGGSKREKREDILASSTGPAGPDTVETSHASKDTVQKQKNKKKKGGKSRKKREAQRRYGPPHLDRETIKRAKVSMRIIAFFYHLSLSVLVATWTELLLKGFDNNFSKAAAFLGTCQGVERGIQFLTAASLGNLSDCVGRRPVLFASLILNIISTLCVIVKPGPMTVLAYFIISGLSNCILAMLNAIVGDLAAGREELEGGLTQQYGRLGMAIGLAMMVGPMLGPSIQQFNVIYPLYISITLVIICVLICLSMAESLPPQNRHIKLEHSNPLWGLKKAMRYRPFLLFALPFFLSQLSESVYAFIVIYTKQRLGWSYVSVGLYISLLALTIAILQGNLRHIVPRFVSGKSLPPSWPSLPPLIPRLNMRLPTCLPLYTSLS 447
BLAST of EWM30079.1 vs. NCBI_GenBank
Match: gi|585112711|gb|EWM30078.1| (major facilitator superfamily mfs_1 [Nannochloropsis gaditana]) HSP 1 Score: 915.22 bits (2364), Expect = 0.000e+0 Identity = 446/447 (99.78%), Postives = 447/447 (100.00%), Query Frame = 0
Query: 1 MDLDLAQTEDAHPLSPSSPAAGSDETKETSLGSQVSSTSLEDTEDVGNEKQEGEKEKDKEEEEVEKEDVEGGSKREKREDILASSTGPAGPDTVETSHASKDTVQKQKNKKKKGGKSRKKREAQRRYGPPHLDRETIKRAKVSMRIIAFFYHLSLSVLVATWTELLLKGFDNNFSKAAAFLGTCQGVERGIQFLTAASLGNLSDCVGRRPVLFASLILNIISTLCVIVKPGPMTVLAYFIISGLSNCILAMLNAIVGDLAAGREELEGGLTQQYGRLGMAIGLAMMVGPMLGPSIQQFNVIYPLYISITLVIICVLICLSMAESLPPQNRHIKLEHSNPLWGLKKAMRYRPFLLFALPFFLSQLSESVYAFIVIYTKQRLGWSYVSVGLYISLLALTIAILQGNLRHIVPRFVSGKSLPPSWPSLPPLIPRLNMRLPTCLPLYTSLS 447
MDLDLAQTEDAHPLSPSSPAAGSDETKETSLGSQVSSTSLEDTEDVGNEKQEGEKEKDKEEEEVEKEDVEGGSKREKREDILASSTGPAGPDTVETSHASKDTVQKQKNKKKKGGKSRKKREAQRRYGPPHLDRETIKRAKVSMRIIAFFYHLSLSVLVATWTELLLKGFDNNFSKAAAFLGTCQGVERGIQFLTAASLGNLSDCVGRRPVLFASLILNIISTLCVIVKPGPMTVLAYFIISGLSNCILAMLNAIVGDLAAGREELEGGLTQQYGRLGMAIGLAMMVGPMLGPSIQQFNV+YPLYISITLVIICVLICLSMAESLPPQNRHIKLEHSNPLWGLKKAMRYRPFLLFALPFFLSQLSESVYAFIVIYTKQRLGWSYVSVGLYISLLALTIAILQGNLRHIVPRFVSGKSLPPSWPSLPPLIPRLNMRLPTCLPLYTSLS
Sbjct: 1 MDLDLAQTEDAHPLSPSSPAAGSDETKETSLGSQVSSTSLEDTEDVGNEKQEGEKEKDKEEEEVEKEDVEGGSKREKREDILASSTGPAGPDTVETSHASKDTVQKQKNKKKKGGKSRKKREAQRRYGPPHLDRETIKRAKVSMRIIAFFYHLSLSVLVATWTELLLKGFDNNFSKAAAFLGTCQGVERGIQFLTAASLGNLSDCVGRRPVLFASLILNIISTLCVIVKPGPMTVLAYFIISGLSNCILAMLNAIVGDLAAGREELEGGLTQQYGRLGMAIGLAMMVGPMLGPSIQQFNVVYPLYISITLVIICVLICLSMAESLPPQNRHIKLEHSNPLWGLKKAMRYRPFLLFALPFFLSQLSESVYAFIVIYTKQRLGWSYVSVGLYISLLALTIAILQGNLRHIVPRFVSGKSLPPSWPSLPPLIPRLNMRLPTCLPLYTSLS 447
BLAST of EWM30079.1 vs. NCBI_GenBank
Match: gi|553180203|ref|XP_005853362.1| (major facilitator superfamily mfs 1, partial [Nannochloropsis gaditana CCMP526] >gi|422295698|gb|EKU22997.1| major facilitator superfamily mfs 1, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 297.745 bits (761), Expect = 3.897e-92 Identity = 147/291 (50.52%), Postives = 211/291 (72.51%), Query Frame = 0
Query: 127 YGPPHLDRETIKRAKVSMRIIAFFYHLSLSVLVATWTELLLKGFDNNFSKAAAFLGTCQGVERGIQFLTAASLGNLSDCVGRRPVLFASLILNIISTLCVIVKPGPMTVLAYFIISGLSNCILAMLNAIVGDLAAGREEL-EGGLTQQYGRLGMAIGLAMMVGPMLGPSIQQFNVIYPLYISITLVIICVLICLSMAESLPPQNR--HIKLEHSNPLWGLKKAMRYRPFLLFALPFFLSQLSESVYAFIVIYTKQRLGWSYVSVGLYISLLALTIAILQGNLRHIVPRFVS 414
+G H ++ ++ K+ R + FFYH+S VL T+TELLL F NN+S+ AAFLG C GVERG+QF ++ LGNLSD VGRRP+L SL+L+ S + V + P +VL YF+I+G SN L M+NAIV DL + + + EG L QQYGRLGMAIGL+M++GP +GP +Q+ NV+YP+Y+S+ + + ++I SMAESL +R +I +NP + L++AMR+R F LF+ PFFL+QL+E VY F+V+YTK+R GW Y+++G Y+S++ + +AI+QG+LR+ VPRFVS
Sbjct: 82 HGHNHHAKQLVRTKKLC-RALGFFYHISFGVLFTTFTELLLNDFGNNYSQTAAFLGVCAGVERGVQFFSSPVLGNLSDSVGRRPILLLSLLLHFASLMVVAILPTRHSVLIYFLINGASNVTLGMINAIVADLCSAQGKTGEGELAQQYGRLGMAIGLSMILGPAIGPVLQKMNVLYPIYLSLAFLGVSIVIAWSMAESLQACHRALNINWRKANPFFVLREAMRFRRFQLFSGPFFLNQLTECVYQFVVLYTKRRFGWGYMTLGFYVSIIGICLAIIQGSLRYFVPRFVS 371
BLAST of EWM30079.1 vs. NCBI_GenBank
Match: gi|1134346291|ref|WP_076585785.1| (MFS transporter [Luteimonas tolerans] >gi|1131779715|emb|SIQ25891.1| MFS transporter, DHA1 family, tetracycline resistance protein [Luteimonas tolerans]) HSP 1 Score: 102.064 bits (253), Expect = 5.609e-20 Identity = 72/242 (29.75%), Postives = 123/242 (50.83%), Query Frame = 0
Query: 176 KAAAFLGTCQGVERGIQFLTAASLGNLSDCVGRRPVLFASLILNIISTLCVIVKPGPMTVLAYFIISGLSNCILAMLNAIVGDLAAGREELEGGLTQQYGRLGMAIGLAMMVGPMLGPSIQQFNVIYPLYISITLVIICVLICL-SMAESLPPQNRHIKLE--HSNPLWGLKKAMRYRPFLLFALPFFLSQLSESVY-AFIVIYTKQRLGWSYVSVGLYISLLALTIAILQG-NLRHIVPRF 412
AA ++G V IQF +A G LSD GRRPV+ S + + + + + P M + +IS +++ NA + D+ + +G +GMA G+ ++GPMLG + F++ YP + + L ++ L + ESLPP+ R + E +NP+ +K +Y + A LS L+ VY + V+Y R GW ++VG ++++ + A++QG +R IVP+F
Sbjct: 49 TAAWWVGIFGTVFAAIQFFSAPIQGALSDRYGRRPVILLSCLGLGLDFILMALAPSLMWLFVARVISAMTSASFTTANAYIADVTPAEKR-----AGAFGMVGMAFGVGFIIGPMLGGWLGHFDLRYPFWGAAILALLNFCYGLFVLPESLPPERRSARFEWKQANPIGSIKLIRQYPQLVGLAAILLLSNLAHYVYPSVFVLYADYRYGWGPMTVGQVLAVVGVCSALVQGLVVRRIVPKF 285
BLAST of EWM30079.1 vs. NCBI_GenBank
Match: gi|550931819|ref|WP_022680231.1| (tetracycline resistance MFS efflux pump [Sandarakinorhabdus limnophila]) HSP 1 Score: 100.138 bits (248), Expect = 2.296e-19 Identity = 79/281 (28.11%), Postives = 134/281 (47.69%), Query Frame = 0
Query: 137 IKRAKVSMRIIAFFYHLSLSVLVATWTELLLKGFDNNFSKAAAFLGTCQGVERGIQFLTAASLGNLSDCVGRRPVLFASLILNIISTLCVIVKPGPMTVLAYFIISGLSNCILAMLNAIVGDLAAGREELEGGLTQQYGRLGMAIGLAMMVGPMLGPSIQQFNVIYPLYISITLVIICVLICL-SMAESLPPQNRH-IKLEHSNPLWGLKKAMRYRP-FLLFALPFFLSQLS-ESVYAFIVIYTKQRLGWSYVSVGLYISLLALTIAILQGNL-RHIVPRF 412
+ RA + I + V++ + +L++K + + AA G + G+QFL +G LSD GRRPVL ASL + + + P ++A +++G++ A + D+ + +G +GMA G ++GP LG + QF P +S L + L L + ESLPP+ R + +NP+ L + P L+ A F+ LS +S+Y+ + + R GW+ VG ++ + +T AI+QG L R ++PRF
Sbjct: 1 MNRALAFIFITVLIDAIGFGVVIPVFPQLIVKLTGRDLANAAEVSGWIAFLYAGVQFLMGPVIGGLSDRFGRRPVLLASLAAFSLDYVVMAFAPTLWWLVAARVVAGITGATFPTAYAYIADVTPPEKR-----GANFGVIGMAFGFGFIIGPALGGFVAQFGTEVPFLVSAGLAMANFLYGLFVLPESLPPEKRRAFEWRRANPVGALMRLKSAHPVVLMLAATVFVWTLSYQSLYSIWSYHGQLRYGWTPEQVGWSLAAVGVTGAIVQGFLGRKLIPRF 276
BLAST of EWM30079.1 vs. NCBI_GenBank
Match: gi|636679721|gb|AIA18800.1| (Tetracycline_Resistance_MFS_Efflux_Pump [uncultured bacterium]) HSP 1 Score: 97.8265 bits (242), Expect = 1.271e-18 Identity = 77/272 (28.31%), Postives = 133/272 (48.90%), Query Frame = 0
Query: 154 SLSVLVATWTELLLKGFDNNFSKAAAFLGTCQGVERGIQFLTAASLGNLSDCVGRRPVLFASLILNIISTLCVIVKPGPMTVLAYFIISGLSNCILAMLNAIVGDLAAGREELEGGLTQQYGRLGMAIGLAMMVGPMLGPSIQQFNVIYPLYISITLVIICVLI-CLSMAESLPPQN-RHIKLEHSNPLWGLKKAMRYRPFL----LFALPFFLSQLSESVYAFIVIYTKQRLGWSYVSVGLYISLLALTIAILQGNL-RHIVPRFVSGKSL 418
L +++ + +L+ + + S+A+ + G +QFL A LGNLSD GRRPVL SL+ + L + + P + II+G++ + A + D++ + Q +G +G A GL ++GP++G + QF P Y++ ++ L + ESL P+N R + +NPL L + +Y L A+ + S +S +AF Y Q+ GW+ VG + + L +A++QG L R ++PR KS+
Sbjct: 22 GLGIIIPVFPKLIQEMIHGDLSRASEYSGWLTFAYAIMQFLFAPLLGNLSDQYGRRPVLLGSLLGFGVDYLFLALAPSIGWLFLGRIIAGITGASFSTATAYIADISTPEKR-----AQNFGLVGAAFGLGFIIGPVVGGLLGQFGPRIPFYVAAGCSLLNALYGYFILPESLAPENRRRFDWKRANPLGTLLQLKKYPATLGLVSSLAILYIASHAVQSTWAF---YNMQKFGWNSAWVGYSLGFVGLMVALVQGGLIRLVIPRIGQEKSI 285
BLAST of EWM30079.1 vs. NCBI_GenBank
Match: gi|516842619|ref|WP_018126444.1| (tetracycline resistance MFS efflux pump [Balneola vulgaris]) HSP 1 Score: 97.4413 bits (241), Expect = 2.048e-18 Identity = 70/241 (29.05%), Postives = 120/241 (49.79%), Query Frame = 0
Query: 175 SKAAAFLGTCQGVERGIQFLTAASLGNLSDCVGRRPVLFASLILNIISTLCVIVKPGPMTVLAYFIISGLSNCILAMLNAIVGDLAAGREELEGGLTQQYGRLGMAIGLAMMVGPMLGPSIQQFNVIYPLYISITLVIICVLI-CLSMAESLPPQNRH-IKLEHSNPLWGLKKAMRYRPFL----LFALPFFLSQLSESVYAFIVIYTKQRLGWSYVSVGLYISLLALTIAILQGNLRHIV 409
SKAA + G V QFL A +G LSD GRRPVL SL I + + + + + +ISG++ + +A + D++A + Q +G +G A GL ++GP++G + Q+ P + + L ++ VL + ESLP + R ++ +NPL LK+ ++ + +FAL + + S + + YT Q+ W VG+ + ++ L +A++QG L IV
Sbjct: 44 SKAAIYGGWLMFVYASTQFLFAPIIGGLSDRFGRRPVLLFSLFGFGIDYILIGLSTNIVWLFIARLISGITGASITTASAYIADISAPEKR-----AQNFGLIGAAFGLGFIIGPVIGGLLGQYGTRVPFFAAAALTLVNVLYGFFVLPESLPKEERRPFNIKRANPLGSLKQFKQFPGIMGLVGVFALIYLAGHATNSTWTY---YTMQKFEWDEKMVGISLGVVGLCVAVVQGGLTRIV 276
BLAST of EWM30079.1 vs. NCBI_GenBank
Match: gi|516263275|ref|WP_017667238.1| (tetracycline resistance MFS efflux pump [Sandarakinorhabdus sp. AAP62]) HSP 1 Score: 96.6709 bits (239), Expect = 3.169e-18 Identity = 79/281 (28.11%), Postives = 134/281 (47.69%), Query Frame = 0
Query: 137 IKRAKVSMRIIAFFYHLSLSVLVATWTELLLKGFDNNFSKAAAFLGTCQGVERGIQFLTAASLGNLSDCVGRRPVLFASLILNIISTLCVIVKPGPMTVLAYFIISGLSNCILAMLNAIVGDLAAGREELEGGLTQQYGRLGMAIGLAMMVGPMLGPSIQQFNVIYPLYISITLVIICVLICL-SMAESLPPQNRH-IKLEHSNPLWGLKKAMRYRP-FLLFALPFFLSQLS-ESVYAFIVIYTKQRLGWSYVSVGLYISLLALTIAILQGNL-RHIVPRF 412
+ RA + I + V++ + +L++K + + AA G + +QFL +G LSD GRRPVL ASL + + + P ++A +++G++ A + D+ E G +G +GMA G ++GP LG + +F P +S L + L L + ESLPP+ R + +NP+ L + P L+ A F+ LS +S+Y+ + + R GW+ VG ++ + +T AI+QG L R ++PRF
Sbjct: 1 MNRALAFIFITVLIDAIGFGVVIPVFPQLIVKLTGRDLAHAAEVSGWIAFLYASVQFLMGPVIGGLSDRFGRRPVLLASLAAFSLDYVVMAFAPTLWWLVAARVVAGITGATFPTAYAYIADVTP--PEKRG---ANFGVIGMAFGFGFIIGPALGGFVARFGTEVPFLVSAGLAMANFLYGLFVLPESLPPERRRSFEWRRANPVGALMRLKSAHPVVLMLAATVFVWTLSYQSLYSIWSYHGQLRYGWTAEQVGWSLAAVGVTGAIVQGFLGRKLIPRF 276
BLAST of EWM30079.1 vs. NCBI_GenBank
Match: gi|1150777803|ref|WP_077972082.1| (MFS transporter [Bartonella apis] >gi|1150391715|gb|AQT45282.1| MFS transporter, DHA1 family, tetracycline resistance protein [Bartonella apis]) HSP 1 Score: 96.2857 bits (238), Expect = 5.913e-18 Identity = 79/287 (27.53%), Postives = 140/287 (48.78%), Query Frame = 0
Query: 132 LDRETIKRAKVSMRIIAFFYHLSLSVLVATWTELLLKGFDNNFSKAAAFLGTCQGVERGIQFLTAASLGNLSDCVGRRPVLFASLI-LNIISTLCVIVKPGPMTVLAYFIISGLSNCILAMLNAIVGDLAAGREELEGGLTQQYGRLGMAIGLAMMVGPMLGPSIQQFNVIYPLYISITLVIICVLICLSMA-ESLPPQ-NRHIKLEHSNPLWGLKKAMRYRPFLLFALPFFLSQLSESVY-AFIVIYTKQRLGWSYVSVGLYISLLALTIAILQGNLRHIVPRFVS 414
LD + + + V + I + ++++V E L + ++ S+A+ G V +QFL A +GNLSD GRRP+L S+I I + +C I M + I++G+S + +A + D++ T+ +G +G+A G+ +GP++G + + P Y S L ++ + + M E+LP R ++ +NP+ L + Y L AL FFL L+E+V+ + + TK+R GWS S+G + + I+ G L + R +S
Sbjct: 5 LDAKFVHKGLVLVFITLLLDIIGIAIIVPVMPEYLSQLTGDSISRASVDGGILLMVYSTMQFLFAPFIGNLSDRFGRRPILLLSIITFAIDNFICAIAWSYSMLFIGR-ILAGVSGASFSTCSAYLADISDDDTR-----TRNFGLIGIAFGVGFFLGPLIGGVLGEIGPRMPFYFSAGLSLVNFVFAMYMLPETLPMSLRRPFEIRRANPVGALLELRHYPTVLWVALAFFLYWLAEAVWPSTLAFMTKERYGWSEFSIGFAYGVFGIGQCIIMGLLLPYMTRHLS 285
BLAST of EWM30079.1 vs. NCBI_GenBank
Match: gi|1059985138|ref|WP_069058137.1| (MFS transporter [Sinorhizobium sp. RAC02] >gi|1059498038|gb|AOF90885.1| sugar (and other) transporter family protein [Sinorhizobium sp. RAC02]) HSP 1 Score: 95.1301 bits (235), Expect = 1.064e-17 Identity = 78/284 (27.46%), Postives = 129/284 (45.42%), Query Frame = 0
Query: 132 LDRETIKRAKVSMRIIAFFYHLSLSVLVATWTELLLKGFDNNFSKAAAFLGTCQGVERGIQFLTAASLGNLSDCVGRRPVLFASLILNIISTLCVIVKPGPMTVLAYFIISGLSNCILAMLNAIVGDLAAGREELEGGLTQQYGRLGMAIGLAMMVGPMLGPSIQQFNVIYPLYISITLVII-CVLICLSMAESLPPQN-RHIKLEHSNPLWGLKKAMRYRPFLLFALPFFLSQLSESVYAFIVIYTKQ-RLGWSYVSVGLYISLLALTIAILQGN-LRHIVPR 411
+D T +R + +I F + +++++ L + ++ S+AA G V G+QFL A +GNLSD GRRPVL A ++ I L + + +++G+S A + D++ + +G +G+A G +GP++G + +F P Y + L + V C + ESL P N R + +NPL L + Y L L FF L+ SVY + + R GWS +GL + + + AI+ L +VPR
Sbjct: 2 IDARTTRRGLFIVFMIMFLDVIGIAIIMPVLPTYLRELTGDSLSEAAIDGGWLLLVYAGMQFLFAPFIGNLSDRFGRRPVLLACILTFAIDNLICALATSYWMLFVGRVLAGISGASFGTAAAYIADVSTDETR-----AKNFGLMGIAFGTGFALGPVIGGLLGEFGPRIPFYGAAALAFLNFVAACFLLPESLEPANRRRFEFSRANPLGALLQMRNYPGVLWIGLVFFCYWLAHSVYPSVWSFVAAFRYGWSEGQIGLSLGVFGIGGAIVMAFVLPRVVPR 280 The following BLAST results are available for this feature:
BLAST of EWM30079.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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