EWM24700.1, cds5963 (CDS) Nannochloropsis gaditana

Overview
NameEWM24700.1
Unique Namecds5963
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:269897..270076 -
Alignment locationCM002467.1:269589..269696 -
Alignment locationCM002467.1:269003..269272 -
Alignment locationCM002467.1:268654..268794 -
Alignment locationCM002467.1:268126..268482 -
Alignment locationCM002467.1:267834..267974 -
Alignment locationCM002467.1:267487..267598 -
Alignment locationCM002467.1:266684..267327 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24700.1
Productdna mismatch repair protein mlh1 isoform 1
Orig transcript idgnl|cribi|Naga_100076g21.8808.mrna
GeneMLH1
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:269897..270076 -
CM002467.1supercontigCM002467.1:269589..269696 -
CM002467.1supercontigCM002467.1:269003..269272 -
CM002467.1supercontigCM002467.1:268654..268794 -
CM002467.1supercontigCM002467.1:268126..268482 -
CM002467.1supercontigCM002467.1:267834..267974 -
CM002467.1supercontigCM002467.1:267487..267598 -
CM002467.1supercontigCM002467.1:266684..267327 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0003677DNA binding
GO:0000166nucleotide binding
GO:0030983mismatched DNA binding
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006298mismatch repair
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0032300mismatch repair complex
Vocabulary: INTERPRO
TermDefinition
IPR020568Ribosomal_S5_D2-typ_fold
IPR014762DNA_mismatch_repair_CS
IPR011186DNA_mismatch_repair_MLH1/HexB
IPR002099DNA_mismatch_repair_fam
IPR013507DNA_mismatch_repair_C
IPR003594HATPase_C
IPR014721Ribosomal_S5_D2-typ_fold_subgr
Homology
BLAST of EWM24700.1 vs. NCBI_GenBank
Match: gi|585106228|gb|EWM24700.1| (dna mismatch repair protein mlh1 isoform 1 [Nannochloropsis gaditana])

HSP 1 Score: 1335.86 bits (3456), Expect = 0.000e+0
Identity = 650/650 (100.00%), Postives = 650/650 (100.00%), Query Frame = 0
Query:    1 MRGGDGTSSGKSTGNTLCSAQKDTLDTDSVNLPCIRRLDADVVNRIAAGEVVAKPANAVKELVENSLDAGAKSIVVTVKDGGMRLLQIQDDGHGIRVTDFPLLCERFTTSKLRHFEDLRSIASFGFRGEALASITHVARVSITSKTCDSPCAYKARFQDGKLVPGVGAGGNAKPQPCAGTNGTTITAEDLFYNMQTRRQALKNPNDLYRAVLDVVTRYAVHFGKDGISFTCRKQGQARPDLYTPQRGASVLGAIKVAFGQVLGRELLELNVSSEERREGGREGASGAPTSPSKDEERAVESGRERMEEGRGNAGVRSAQGEEGLSFKAHGYVSNANFNMKKGVFMLFINNRMVESTAIKRIMESVYAPILPTHTHPFLYLALDLPPAHVDVNVHPTKREVHFLHEDELLSKLAAGLEALLRGANTSRTFYGKSLAHGLAPPTDLTQVIGAPGPPTLEQGDDRSTMIEDKDIEGRDGEGAVQAKRKERQALLPYKMIRTDASMRNLRSFLYTPEADDYHSQQQSQPSPQDENPDSQDAAQLSSPLAAEVDSRNHDKQEGDSGTEKKEEVPDVRDDGAVPLVVASSSTATVGEREGGREGGKDRHYRRRLPSFTETKCQYLSVRALLADIHDRVHQYEGGREGGRGAGGKVV 650
            MRGGDGTSSGKSTGNTLCSAQKDTLDTDSVNLPCIRRLDADVVNRIAAGEVVAKPANAVKELVENSLDAGAKSIVVTVKDGGMRLLQIQDDGHGIRVTDFPLLCERFTTSKLRHFEDLRSIASFGFRGEALASITHVARVSITSKTCDSPCAYKARFQDGKLVPGVGAGGNAKPQPCAGTNGTTITAEDLFYNMQTRRQALKNPNDLYRAVLDVVTRYAVHFGKDGISFTCRKQGQARPDLYTPQRGASVLGAIKVAFGQVLGRELLELNVSSEERREGGREGASGAPTSPSKDEERAVESGRERMEEGRGNAGVRSAQGEEGLSFKAHGYVSNANFNMKKGVFMLFINNRMVESTAIKRIMESVYAPILPTHTHPFLYLALDLPPAHVDVNVHPTKREVHFLHEDELLSKLAAGLEALLRGANTSRTFYGKSLAHGLAPPTDLTQVIGAPGPPTLEQGDDRSTMIEDKDIEGRDGEGAVQAKRKERQALLPYKMIRTDASMRNLRSFLYTPEADDYHSQQQSQPSPQDENPDSQDAAQLSSPLAAEVDSRNHDKQEGDSGTEKKEEVPDVRDDGAVPLVVASSSTATVGEREGGREGGKDRHYRRRLPSFTETKCQYLSVRALLADIHDRVHQYEGGREGGRGAGGKVV
Sbjct:    1 MRGGDGTSSGKSTGNTLCSAQKDTLDTDSVNLPCIRRLDADVVNRIAAGEVVAKPANAVKELVENSLDAGAKSIVVTVKDGGMRLLQIQDDGHGIRVTDFPLLCERFTTSKLRHFEDLRSIASFGFRGEALASITHVARVSITSKTCDSPCAYKARFQDGKLVPGVGAGGNAKPQPCAGTNGTTITAEDLFYNMQTRRQALKNPNDLYRAVLDVVTRYAVHFGKDGISFTCRKQGQARPDLYTPQRGASVLGAIKVAFGQVLGRELLELNVSSEERREGGREGASGAPTSPSKDEERAVESGRERMEEGRGNAGVRSAQGEEGLSFKAHGYVSNANFNMKKGVFMLFINNRMVESTAIKRIMESVYAPILPTHTHPFLYLALDLPPAHVDVNVHPTKREVHFLHEDELLSKLAAGLEALLRGANTSRTFYGKSLAHGLAPPTDLTQVIGAPGPPTLEQGDDRSTMIEDKDIEGRDGEGAVQAKRKERQALLPYKMIRTDASMRNLRSFLYTPEADDYHSQQQSQPSPQDENPDSQDAAQLSSPLAAEVDSRNHDKQEGDSGTEKKEEVPDVRDDGAVPLVVASSSTATVGEREGGREGGKDRHYRRRLPSFTETKCQYLSVRALLADIHDRVHQYEGGREGGRGAGGKVV 650          
BLAST of EWM24700.1 vs. NCBI_GenBank
Match: gi|553187791|ref|XP_005854679.1| (DNA mismatch repair protein MLH1, partial [Nannochloropsis gaditana CCMP526] >gi|422294380|gb|EKU21680.1| DNA mismatch repair protein MLH1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1008.82 bits (2607), Expect = 0.000e+0
Identity = 490/493 (99.39%), Postives = 491/493 (99.59%), Query Frame = 0
Query:   96 RVTDFPLLCERFTTSKLRHFEDLRSIASFGFRGEALASITHVARVSITSKTCDSPCAYKARFQDGKLVPGVGAGGNAKPQPCAGTNGTTITAEDLFYNMQTRRQALKNPNDLYRAVLDVVTRYAVHFGKDGISFTCRKQGQARPDLYTPQRGASVLGAIKVAFGQVLGRELLELNVSSEERREGGREGASGAPTSPSKDEERAVESGRERMEEGRGNAGVRSAQGEEGLSFKAHGYVSNANFNMKKGVFMLFINNRMVESTAIKRIMESVYAPILPTHTHPFLYLALDLPPAHVDVNVHPTKREVHFLHEDELLSKLAAGLEALLRGANTSRTFYGKSLAHGLAPPTDLTQVIGAPGPPTLEQGDDRSTMIEDKDIEGRDGEGAVQAKRKERQALLPYKMIRTDASMRNLRSFLYTPEADDYHSQQQSQPSPQDENPDSQDAAQLSSPLAAEVDSRNHDKQEGDSGTEKKEEVPDVRDDGAVPLVVASSSTAT 588
            +VTDFPLLCERFTTSKLRHFEDLRSIASFGFRGEALASITHVARVSITSKT DSPCAYKARFQDGKLVPGVG GGNAKPQPCAGTNGTTITAEDLFYNMQTRRQALKNPNDLYRAVLDVVTRYAVHFGKDGISFTCRKQGQARPDLYTPQRGASVLGAIKVAFGQVLGRELLELNVSSEERREGGREGASGAPTSPSKDEERAVESGRERMEEGRGNAGVRSAQGEEGLSFKAHGYVSNANFNMKKGVFMLFINNRMVESTAIKRIMESVYAPILPTHTHPFLYLALDLPPAHVDVNVHPTKREVHFLHEDELLSKLAAGLEALLRGANTSRTFYGKSLAHGLAPPTDLTQVIGAPGPPTLEQGDDRSTMIEDKDIEGRDGEGAVQAKRKERQALLPYKMIRTDASMRNLRSFLYTPEADDYHSQQQSQPSPQDENPDSQDAAQLSSPLAAEVDSRNHDKQEGDSGTEKKEEVPDVRDDGAVPLVVASSSTAT
Sbjct:    7 QVTDFPLLCERFTTSKLRHFEDLRSIASFGFRGEALASITHVARVSITSKTRDSPCAYKARFQDGKLVPGVGVGGNAKPQPCAGTNGTTITAEDLFYNMQTRRQALKNPNDLYRAVLDVVTRYAVHFGKDGISFTCRKQGQARPDLYTPQRGASVLGAIKVAFGQVLGRELLELNVSSEERREGGREGASGAPTSPSKDEERAVESGRERMEEGRGNAGVRSAQGEEGLSFKAHGYVSNANFNMKKGVFMLFINNRMVESTAIKRIMESVYAPILPTHTHPFLYLALDLPPAHVDVNVHPTKREVHFLHEDELLSKLAAGLEALLRGANTSRTFYGKSLAHGLAPPTDLTQVIGAPGPPTLEQGDDRSTMIEDKDIEGRDGEGAVQAKRKERQALLPYKMIRTDASMRNLRSFLYTPEADDYHSQQQSQPSPQDENPDSQDAAQLSSPLAAEVDSRNHDKQEGDSGTEKKEEVPDVRDDGAVPLVVASSSTAT 499          
BLAST of EWM24700.1 vs. NCBI_GenBank
Match: gi|299471543|emb|CBN80029.1| (MutL protein homolog 1 [Ectocarpus siliculosus])

HSP 1 Score: 457.603 bits (1176), Expect = 2.210e-144
Identity = 230/400 (57.50%), Postives = 285/400 (71.25%), Query Frame = 0
Query:   35 IRRLDADVVNRIAAGEVVAKPANAVKELVENSLDAGAKSIVVTVKDGGMRLLQIQDDGHGIRVTDFPLLCERFTTSKLRHFEDLRSIASFGFRGEALASITHVARVSITSKTCDSPCAYKARFQDGKLVPGVGAGGNAKPQPCAGTNGTTITAEDLFYNMQTRRQALKNPNDLYRAVLDVVTRYAVHFGKDGISFTCRKQGQARPDLYTPQRGASVLGAIKVAFGQVLGRELLELNVSSEERREGGREGASGAPTSPSKDEERAVESGRERMEEGRGNAGVRSAQGEEGLSFKAHGYVSNANFNMKKGVFMLFINNRMVESTAIKRIMESVYAPILPTHTHPFLYLALDLPPAHVDVNVHPTKREVHFLHEDELLSKLAAGLEALLRGANTSRTFYGKSL 434
            I +LD DVVNRIAAGEVV +PANAVKEL+ENSLDAG+ SI VT K GG++LLQIQD+GHGIR  D P++CERFTTSKLR F DLR++++FGFRGEALASITH A+V+ITSKT  S  AYKA++ DG+LV G G G +A P+PCAG  GTTI AEDLFYNM TRR+A K+P + Y+ +LDVVTRYAVHFG  G+SFTC+K GQ  PDL+TP R +S L  I+VAFG  L REL+EL  S  E  E   +GA G   +PSK                               +FKA G VS A+++ K+  F+LFIN+R+VES +IK+ +ES Y  +LP +THPF+YL + +P  H+DVNVHPTKREVHFLH++ELL  L   +E  L GAN SRTFY + +
Sbjct:   11 ILKLDEDVVNRIAAGEVVQRPANAVKELMENSLDAGSTSITVTAKQGGLKLLQIQDNGHGIRREDLPIVCERFTTSKLREFGDLRTMSTFGFRGEALASITHTAKVTITSKTPSSQVAYKAKYSDGRLVAG-GPGQSADPKPCAGVTGTTILAEDLFYNMDTRRRAFKSPGEQYKGILDVVTRYAVHFGDRGVSFTCKKHGQPSPDLHTPPR-SSCLANIRVAFGPALSRELVELECSQAE--ELLDQGADGGEVAPSK------------------------------FAFKAKGLVSGADYSAKRSDFILFINDRLVESPSIKKTVESAYKDVLPKNTHPFVYLGITMPSHHLDVNVHPTKREVHFLHQEELLECLRQAVEQKLAGANQSRTFYSQVI 376          
BLAST of EWM24700.1 vs. NCBI_GenBank
Match: gi|511003378|gb|EPB84782.1| (hypothetical protein HMPREF1544_08425 [Mucor circinelloides f. circinelloides 1006PhL])

HSP 1 Score: 433.721 bits (1114), Expect = 4.623e-140
Identity = 233/517 (45.07%), Postives = 320/517 (61.90%), Query Frame = 0
Query:   29 SVNLPCIRRLDADVVNRIAAGEVVAKPANAVKELVENSLDAGAKSIVVTVKDGGMRLLQIQDDGHGIRVTDFPLLCERFTTSKLRHFEDLRSIASFGFRGEALASITHVARVSITSKTCDSPCAYKARFQDGKLVPGVGAGGNAKPQPCAGTNGTTITAEDLFYNMQTRRQALKNPNDLYRAVLDVVTRYAVHFGKDGISFTCRKQGQARPDLYTPQRGASVLGAIKVAFGQVLGRELLELNVSSEERREGGREGASGAPTSPSKDEERAVESGRERMEEGRGNAGVRSAQGEEGLSFKAHGYVSNANFNMKKGVFMLFINNRMVESTAIKRIMESVYAPILPTHTHPFLYLALDLPPAHVDVNVHPTKREVHFLHEDELLSKLAAGLEALLRGANTSRTFYGKSLAHGLAPPTDLTQVIGAPGPPTLEQGDDRSTMIEDKDIEGRDGEGAVQAKRKERQALLP-YKMIRTDASMRNLRSFLYTPEADDYHSQQQSQPSPQDENP---DSQDAAQLS 541
            S+ +P +R+LD  VVNRIAAGEV+ +PANA+KEL+EN LDAG+  I + VKDGG++LLQIQD+GHGIR  D P++CERFTTSKL  FEDL  I++ GFRGEALASI+HVA V+IT+KT DSPCAY+A + DGKLVP    G +A P+ CAG NGT ITAEDLFYN+ TRR+A K+ +D Y  +LD+V+RYAVH    G+SF+CRKQG +  D+ T   GAS +  I++  G V   ELL+++ + +E R                                                FK +G++SNAN+N+KK  F+LFIN+R VES++IKR +E++Y+ +LP   HPF+YL+L++ P +VDVNVHPTK+EVHFLHE+ ++  +    +  L  AN SRTFY ++L  G + P   T                      D D+E ++G+  V+ K   +   +P YK +RTD+ +  L +F+Y P       QQ  Q  P+ E+    D+ DA+ LS
Sbjct:    2 SIEIPKVRKLDEKVVNRIAAGEVIQRPANALKELIENCLDAGSTQIQILVKDGGLKLLQIQDNGHGIRKEDMPIVCERFTTSKLSRFEDLTGISTHGFRGEALASISHVAHVTITTKTADSPCAYRALYSDGKLVPA-KPGQSADPKACAGNNGTQITAEDLFYNVPTRRKAFKSSSDEYNRILDIVSRYAVH--NAGVSFSCRKQGSSVADVQT-STGASTVDNIRLLHGSV-ASELLDIDRTFDELR------------------------------------------------FKMNGHISNANYNVKKMTFLLFINHRAVESSSIKRAIENIYSLLLPKGAHPFVYLSLEIDPQNVDVNVHPTKKEVHFLHENRIIGAICDAFQETLENANHSRTFYTQALLPGASDPAKKTS--------------------HDSDVEEQEGDH-VEPKHISKSTTVPEYKYVRTDSRVTTLDTFIYKPAL-----QQPQQTRPESEDSMEIDTDDASHLS 439          
BLAST of EWM24700.1 vs. NCBI_GenBank
Match: gi|1026264766|gb|OAC97930.1| (hypothetical protein MUCCIDRAFT_86729 [Mucor circinelloides f. lusitanicus CBS 277.49])

HSP 1 Score: 419.853 bits (1078), Expect = 8.059e-135
Identity = 219/484 (45.25%), Postives = 306/484 (63.22%), Query Frame = 0
Query:   30 VNLPCIRRLDADVVNRIAAGEVVAKPANAVKELVENSLDAGAKSIVVTVKDGGMRLLQIQDDGHGIRVTDFPLLCERFTTSKLRHFEDLRSIASFGFRGEALASITHVARVSITSKTCDSPCAYKARFQDGKLVPGVGAGGNAKPQPCAGTNGTTITAEDLFYNMQTRRQALKNPNDLYRAVLDVVTRYAVHFGKDGISFTCRKQGQARPDLYTPQRGASVLGAIKVAFGQVLGRELLELNVSSEERREGGREGASGAPTSPSKDEERAVESGRERMEEGRGNAGVRSAQGEEGLSFKAHGYVSNANFNMKKGVFMLFINNRMVESTAIKRIMESVYAPILPTHTHPFLYLALDLPPAHVDVNVHPTKREVHFLHEDELLSKLAAGLEALLRGANTSRTFYGKSLAHGLAPPTDLTQVIGAPGPPTLEQGDDRSTMIEDKDIEGRDGEGAVQAKRKERQALLP-YKMIRTDASMRNLRSFLYTP 512
            + +P +R+LD  VVNRIAAGEV+ +PANA+KEL+EN LDAG+  I + VKDGG++LLQIQD+GHGIR  D P++CERFTTSKL  FEDL  I++ GFRGEALASI+HVA V+IT+KT DSPCAY+A + DGKLVP    G +A P+ CAG NGT ITAEDLFYN+ TRR+A K+P+D Y  +LD+V+RYA+H    G+SF+CRKQG    D+ T   GA+ +  I++  G V   ELL+++ + +E R                                                FK +G++SNAN+++KK  F+LFIN+R VES+++KR +E++Y+ +LP   HPF+YL+L++ P +VDVNVHP+K+EVHFLHE+ ++  +    +  L  AN SRTFY ++L  G + PT  T                      D+D E  + +GA++ K   +   +P YK +RTD+ +  L +F+Y P
Sbjct:    3 IEIPKVRKLDEKVVNRIAAGEVIQRPANALKELIENCLDAGSTQIQILVKDGGLKLLQIQDNGHGIRKEDMPIVCERFTTSKLNRFEDLTGISTHGFRGEALASISHVAHVTITTKTADSPCAYRALYSDGKLVPA-KPGQSADPKACAGNNGTQITAEDLFYNVPTRRKAFKSPSDEYNRILDIVSRYAIHNA--GVSFSCRKQGSNIADVQT-STGATTVDNIRLLHGSV-ASELLDIDKTFDELR------------------------------------------------FKMNGHISNANYSVKKMTFLLFINHRAVESSSVKRAIENIYSLLLPKGAHPFVYLSLEIDPQNVDVNVHPSKKEVHFLHENRIIEAICDAFQEALENANHSRTFYTQALLPGASDPTKKTTT--------------------DQDGEELE-DGALEPKSTLKPTTVPEYKYVRTDSRVTTLDTFIYKP 412          
BLAST of EWM24700.1 vs. NCBI_GenBank
Match: gi|729715677|emb|CEI88055.1| (Putative DNA mismatch repair protein (Fragment) [Rhizopus microsporus])

HSP 1 Score: 414.461 bits (1064), Expect = 8.932e-135
Identity = 223/482 (46.27%), Postives = 299/482 (62.03%), Query Frame = 0
Query:   33 PCIRRLDADVVNRIAAGEVVAKPANAVKELVENSLDAGAKSIVVTVKDGGMRLLQIQDDGHGIRVTDFPLLCERFTTSKLRHFEDLRSIASFGFRGEALASITHVARVSITSKTCDSPCAYKARFQDGKLVPGVGAGGNAKPQPCAGTNGTTITAEDLFYNMQTRRQALKNPNDLYRAVLDVVTRYAVHFGKDGISFTCRKQGQARPDLYTPQRGASVLGAIKVAFGQVLGRELLELNVSSEERREGGREGASGAPTSPSKDEERAVESGRERMEEGRGNAGVRSAQGEEGLSFKAHGYVSNANFNMKKGVFMLFINNRMVESTAIKRIMESVYAPILPTHTHPFLYLALDLPPAHVDVNVHPTKREVHFLHEDELLSKLAAGLEALLRGANTSRTFYGKSLAHGLAPPTDLTQVIGAPGPPTLEQGDDRSTMIEDKDIEGRDGEGAVQAKRKERQALLPYKMIRTDASMRNLRSFLYTPEA 514
            P I+RLD  VVNRIAAGEV+ +PANA+KEL+ENSLDAG+  I +++KDGG++LLQIQD+GHGIR  D  ++CERFTTSKL  FEDL  IA++GFRGEALASI+HVA V+IT+KT DSPCAY+A + DGKLVP    G +A P+PCAG NGT ITAEDLFYN+ TRR+ALK+ ++ Y  +LD+ TRYAVH    G+SFTCRK G    D+ TP  GAS L  I++ +G V   ELL                               VE   E +E                  FK  GY+SNAN++ K+  F+LFIN+R V+S  IKR +E++Y+ +LP   HPF+YL+L++ P +VDVNVHPTK+EVHFL+ED ++  + +  +++L  AN+SRTFY + L  G + P                + + RS    DK I       +  +       +  YK +RTD+ M  L +F Y+ ++
Sbjct:    4 PRIKRLDQAVVNRIAAGEVIQRPANALKELIENSLDAGSTQIQISIKDGGLKLLQIQDNGHGIRKEDMTIVCERFTTSKLSKFEDLSQIATYGFRGEALASISHVAHVTITTKTADSPCAYRASYSDGKLVPA-RPGQSADPKPCAGNNGTQITAEDLFYNVPTRRKALKSASEEYNKILDITTRYAVH--NSGVSFTCRKLGTNVSDIQTPT-GASTLDNIRLLYGSV-ASELL------------------------------PVEKNFEEVE------------------FKLKGYISNANYSSKRTTFLLFINHRAVDSLNIKRAIENLYSSLLPKGGHPFIYLSLEINPRNVDVNVHPTKKEVHFLYEDRVVEGIISAFQSVLENANSSRTFYTQVLLPGASKPN---------------EQEKRS----DKPI-------SRPSSSSSSNTVAEYKYVRTDSKMNQLETFGYSIQS 406          
BLAST of EWM24700.1 vs. NCBI_GenBank
Match: gi|729697009|emb|CEJ05402.1| (Putative DNA mismatch repair protein (Fragment) [Rhizopus microsporus])

HSP 1 Score: 408.683 bits (1049), Expect = 3.490e-134
Identity = 207/411 (50.36%), Postives = 276/411 (67.15%), Query Frame = 0
Query:   33 PCIRRLDADVVNRIAAGEVVAKPANAVKELVENSLDAGAKSIVVTVKDGGMRLLQIQDDGHGIRVTDFPLLCERFTTSKLRHFEDLRSIASFGFRGEALASITHVARVSITSKTCDSPCAYKARFQDGKLVPGVGAGGNAKPQPCAGTNGTTITAEDLFYNMQTRRQALKNPNDLYRAVLDVVTRYAVHFGKDGISFTCRKQGQARPDLYTPQRGASVLGAIKVAFGQVLGRELLELNVSSEERREGGREGASGAPTSPSKDEERAVESGRERMEEGRGNAGVRSAQGEEGLSFKAHGYVSNANFNMKKGVFMLFINNRMVESTAIKRIMESVYAPILPTHTHPFLYLALDLPPAHVDVNVHPTKREVHFLHEDELLSKLAAGLEALLRGANTSRTFYGKSLAHGLAPPTD 443
            P I++LD  VVNRIAAGEV+ +PANA+KEL+ENSLDAG+  I +++KDGG++LLQIQD+GHGIR  D  ++CERFTTSKL  FEDL  IA++GFRGEALASI+HVA V+IT+KT DSPCAY+A + DGKLVP    G +A P+PCAG NGT ITAEDLFYN+ TRR+ALK+ ++ Y  +LD+ TRYAVH    G+SFTCRK G    D+ TP  GAS L  I++ +G V+  ELL +  S EE                                                + FK  GY+SNAN++ K+  F+LFIN+R V+S  IKR +E++Y+ +LP   HPF+YL+L++ P +VDVNVHPTK+EVHFL+ED ++  + +  +++L  AN+SRTFY + L  G + P +
Sbjct:    4 PSIKKLDQAVVNRIAAGEVIQRPANALKELIENSLDAGSTQIQISIKDGGLKLLQIQDNGHGIR--DMAIVCERFTTSKLSKFEDLSQIATYGFRGEALASISHVAHVTITTKTADSPCAYRASYSDGKLVPA-RPGQSADPKPCAGNNGTQITAEDLFYNVPTRRKALKSASEEYNRILDITTRYAVH--NSGVSFTCRKLGTNVSDIQTPT-GASTLDNIRLLYGSVVS-ELLPVEKSFEE------------------------------------------------VEFKLKGYISNANYSSKRTTFLLFINHRAVDSLNIKRAIENLYSSLLPKGGHPFIYLSLEINPRNVDVNVHPTKKEVHFLYEDRVVEGIISTFQSVLENANSSRTFYTQVLLPGASKPNE 359          
BLAST of EWM24700.1 vs. NCBI_GenBank
Match: gi|1178061395|gb|ORE15928.1| (DNA mismatch repair protein hexB [Rhizopus microsporus])

HSP 1 Score: 410.994 bits (1055), Expect = 2.186e-131
Identity = 223/482 (46.27%), Postives = 299/482 (62.03%), Query Frame = 0
Query:   33 PCIRRLDADVVNRIAAGEVVAKPANAVKELVENSLDAGAKSIVVTVKDGGMRLLQIQDDGHGIRVTDFPLLCERFTTSKLRHFEDLRSIASFGFRGEALASITHVARVSITSKTCDSPCAYKARFQDGKLVPGVGAGGNAKPQPCAGTNGTTITAEDLFYNMQTRRQALKNPNDLYRAVLDVVTRYAVHFGKDGISFTCRKQGQARPDLYTPQRGASVLGAIKVAFGQVLGRELLELNVSSEERREGGREGASGAPTSPSKDEERAVESGRERMEEGRGNAGVRSAQGEEGLSFKAHGYVSNANFNMKKGVFMLFINNRMVESTAIKRIMESVYAPILPTHTHPFLYLALDLPPAHVDVNVHPTKREVHFLHEDELLSKLAAGLEALLRGANTSRTFYGKSLAHGLAPPTDLTQVIGAPGPPTLEQGDDRSTMIEDKDIEGRDGEGAVQAKRKERQALLPYKMIRTDASMRNLRSFLYTPEA 514
            P I+RLD  VVNRIAAGEV+ +PANA+KEL+ENSLDAG+  I +++KDGG++LLQIQD+GHGIR  D  ++CERFTTSKL  FEDL  IA++GFRGEALASI+HVA V+IT+KT DSPCAY+A + DGKLVP    G +A P+PCAG NGT ITAEDLFYN+ TRR+ALK+ ++ Y  +LD+ TRYAVH    G+SFTCRK G    D+ TP  GAS L  I++ +G V   ELL                               VE   E +E                  FK  GY+SNAN++ K+  F+LFIN+R V+S  IKR +E++Y+ +LP   HPF+YL+L++ P +VDVNVHPTK+EVHFL+ED ++  + +  +++L  AN+SRTFY + L  G + P                + + RS    DK I       +  +       +  YK +RTD+ M  L +F Y+ ++
Sbjct:    4 PRIKRLDQAVVNRIAAGEVIQRPANALKELIENSLDAGSTQIQISIKDGGLKLLQIQDNGHGIRKEDMTIVCERFTTSKLSKFEDLSQIATYGFRGEALASISHVAHVTITTKTADSPCAYRASYSDGKLVPA-RPGQSADPKPCAGNNGTQITAEDLFYNVPTRRKALKSASEEYNKILDITTRYAVH--NSGVSFTCRKLGTNVSDIQTPT-GASTLDNIRLLYGSV-ASELL------------------------------PVEKNFEEVE------------------FKLKGYISNANYSSKRTTFLLFINHRAVDSLNIKRAIENLYSSLLPKGGHPFIYLSLEINPRNVDVNVHPTKKEVHFLYEDRVVEGIISAFQSVLENANSSRTFYTQVLLPGASKPN---------------EQEKRS----DKPI-------SRPSSSSSSNTVAEYKYVRTDSKMNQLETFGYSIQS 406          
BLAST of EWM24700.1 vs. NCBI_GenBank
Match: gi|1043300609|gb|OBZ85589.1| (DNA mismatch repair protein Mlh1 [Choanephora cucurbitarum])

HSP 1 Score: 410.223 bits (1053), Expect = 3.268e-131
Identity = 216/481 (44.91%), Postives = 294/481 (61.12%), Query Frame = 0
Query:   31 NLPCIRRLDADVVNRIAAGEVVAKPANAVKELVENSLDAGAKSIVVTVKDGGMRLLQIQDDGHGIRVTDFPLLCERFTTSKLRHFEDLRSIASFGFRGEALASITHVARVSITSKTCDSPCAYKARFQDGKLVPGVGAGGNAKPQPCAGTNGTTITAEDLFYNMQTRRQALKNPNDLYRAVLDVVTRYAVHFGKDGISFTCRKQGQARPDLYTPQRGASVLGAIKVAFGQVLGRELLELNVSSEERREGGREGASGAPTSPSKDEERAVESGRERMEEGRGNAGVRSAQGEEGLSFKAHGYVSNANFNMKKGVFMLFINNRMVESTAIKRIMESVYAPILPTHTHPFLYLALDLPPAHVDVNVHPTKREVHFLHEDELLSKLAAGLEALLRGANTSRTFYGKSLAHGLAPPTDLTQVIGAPGPPTLEQGDDRSTMIEDKDIEGRDGEGAVQAKRKERQALLPYKMIRTDASMRNLRSFLYT 511
             +P I++LD  VVNRIAAGEV+ +PANA+KEL+ENSLDAG+  I + +KDGG++LLQIQD+GHGIR  D  ++CERFTTSKL  FEDL  I+++GFRGEALASI+HVA V+IT+KT +SPCAY+A + DG+L P    G +A+P+ CAG NGT ITAEDLFYN+ TRR+ALK+P+D Y  +LD+V+RYAVH    GISFTCRKQG    D+ T   GA+V+  I+  +G  +  ELL +                                                 Q  E L     G ++NAN++MK+   +LFIN+R VES++IKR +ESVY+ +LP   HPF+YL+L + P +VDVNVHPTK+EVHFLHE+ ++  L    + +L  ANTSRTFY ++L  G++ PT   Q                                  +A    RQ++  YK +RTD+ +  L +F+++
Sbjct:    3 TIPSIKKLDQAVVNRIAAGEVIQRPANALKELIENSLDAGSTQIQILIKDGGLKLLQIQDNGHGIRKEDMRIVCERFTTSKLSKFEDLMGISTYGFRGEALASISHVAHVTITTKTAESPCAYRALYSDGQLTPA-RPGASAEPKACAGNNGTQITAEDLFYNVPTRRKALKSPSDEYNRILDIVSRYAVH--NAGISFTCRKQGATMADVQT-STGATVVDTIRQLYGSSVASELLPVE------------------------------------------------QSLETLDVTVKGQITNANYSMKRMTLLLFINHRAVESSSIKRAIESVYSALLPKGGHPFVYLSLQMDPKNVDVNVHPTKKEVHFLHEERIVQALGDVFQKVLENANTSRTFYTQALLPGVSDPTVEPQ----------------------------------EASFNHRQSVPEYKYVRTDSRVTTLDAFVHS 397          
BLAST of EWM24700.1 vs. NCBI_GenBank
Match: gi|552915568|gb|ESA00848.1| (hypothetical protein GLOINDRAFT_38711 [Rhizophagus irregularis DAOM 181602])

HSP 1 Score: 412.149 bits (1058), Expect = 5.303e-131
Identity = 228/509 (44.79%), Postives = 317/509 (62.28%), Query Frame = 0
Query:   27 TDSVNLPCIRRLDADVVNRIAAGEVVAKPANAVKELVENSLDAGAKSIVVTVKDGGMRLLQIQDDGHGIRVTDFPLLCERFTTSKLRHFEDLRSIASFGFRGEALASITHVARVSITSKTCDSPCAYKARFQDGKLVPGVGAGGNAKPQPCAGTNGTTITAEDLFYNMQTRRQALKNPNDLYRAVLDVVTRYAVHFGKDGISFTCRKQGQARPDLYTPQRGASVLGAIKVAFGQVLGRELLELNVSSEERREGGREGASGAPTSPSKDEERAVESGRERMEEGRGNAGVRSAQGEEGLSFKAHGYVSNANFNMKKGVFMLFINNRMVESTAIKRIMESVYAPILPTHTHPFLYLALDLPPAHVDVNVHPTKREVHFLHEDELLSKLAAGLEALLRGANTSRTFYGKSLAHGLAPPTDLTQVIGAPGPPTLEQGDDRSTMIEDKDIEGRDGEGAVQAKRKERQALLPYKMIRTDASMRNLRSFLYTPEADDYHSQQQSQPSPQDEN-PDS 534
            TD  N   IRRL+  VVNRIAAGE++ +PANA+KEL+ENSLDAGA +I +TVKDGG++LLQI D+GHGIR  D  ++CERFTTSKL++FEDL +I ++GFRGEALASI+HVA V+IT+KT DS CAY+A + DGKLVP    G NA+P+ CAG  GT ITAEDLFYN+ TRR+ALK+P+D Y  +LDVV RYA+H    G+SFTC+KQG  + ++ T    +SVL  I+  +G +   ELL L+ S ++                                                L FK +GY+SNAN+N+KK +F+LFIN+R VE++++K+ +ES+Y   LP +THPF YL+L++ P +VDVNVHPTKREV FL+EDE+++ +   ++  L GAN+SRTF              LTQ +  PG  ++E   +                 A  + +K    +L YK++RTD+ ++ L  F   P+ + ++ Q +  P   + N P+S
Sbjct:    2 TDKTNPRPIRRLNETVVNRIAAGEIINRPANALKELIENSLDAGASNIQITVKDGGLKLLQILDNGHGIRKEDMTIVCERFTTSKLKNFEDLSNINTYGFRGEALASISHVAHVTITTKTADSNCAYRACYSDGKLVPA-KPGTNAEPKACAGNTGTQITAEDLFYNVPTRRKALKSPSDEYNRILDVVNRYAIH--NSGVSFTCKKQGSNQAEVNTLSM-SSVLDNIRQIYGSI-ASELLGLSKSFKK------------------------------------------------LEFKLNGYISNANYNLKKMIFLLFINHRAVENSSLKKAIESIYTTYLPKNTHPFAYLSLEINPQNVDVNVHPTKREVRFLNEDEVIAAVGDAIQESLAGANSSRTF--------------LTQTL-LPGAESIETNTNL----------------AENSIKKSGVKVLNYKLVRTDSRVQTLDDFC-NPD-NTFNMQPKDNPKKGNNNFPNS 424          
The following BLAST results are available for this feature:
BLAST of EWM24700.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106228|gb|EWM24700.1|0.000e+0100.00dna mismatch repair protein mlh1 isoform 1 [Nannoc... [more]
gi|553187791|ref|XP_005854679.1|0.000e+099.39DNA mismatch repair protein MLH1, partial [Nannoch... [more]
gi|299471543|emb|CBN80029.1|2.210e-14457.50MutL protein homolog 1 [Ectocarpus siliculosus][more]
gi|511003378|gb|EPB84782.1|4.623e-14045.07hypothetical protein HMPREF1544_08425 [Mucor circi... [more]
gi|1026264766|gb|OAC97930.1|8.059e-13545.25hypothetical protein MUCCIDRAFT_86729 [Mucor circi... [more]
gi|729715677|emb|CEI88055.1|8.932e-13546.27Putative DNA mismatch repair protein (Fragment) [R... [more]
gi|729697009|emb|CEJ05402.1|3.490e-13450.36Putative DNA mismatch repair protein (Fragment) [R... [more]
gi|1178061395|gb|ORE15928.1|2.186e-13146.27DNA mismatch repair protein hexB [Rhizopus microsp... [more]
gi|1043300609|gb|OBZ85589.1|3.268e-13144.91DNA mismatch repair protein Mlh1 [Choanephora cucu... [more]
gi|552915568|gb|ESA00848.1|5.303e-13144.79hypothetical protein GLOINDRAFT_38711 [Rhizophagus... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5978rna5978Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications