EWM24717.1, cds5957 (CDS) Nannochloropsis gaditana

Overview
NameEWM24717.1
Unique Namecds5957
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:248278..248635 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24717.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100978g4.1501.mrna
GbkeyCDS
End range.
End range248635
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:248278..248635 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM24717.1 vs. NCBI_GenBank
Match: gi|585106251|gb|EWM24717.1| (hypothetical protein Naga_100978g4, partial [Nannochloropsis gaditana])

HSP 1 Score: 239.195 bits (609), Expect = 6.994e-80
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0
Query:    1 MVLQAFVDRLRGVQEITVKRLYKFVLKKALGKFLAGQLGVDQLDVKFIVLEDDTTSAPPSPGAPPARRGYVQLRDIVMNVEAVNALLTDQPFKLHRGRLGKVEVRVCYEQVLREGMEVA 119
            MVLQAFVDRLRGVQEITVKRLYKFVLKKALGKFLAGQLGVDQLDVKFIVLEDDTTSAPPSPGAPPARRGYVQLRDIVMNVEAVNALLTDQPFKLHRGRLGKVEVRVCYEQVLREGMEVA
Sbjct:    1 MVLQAFVDRLRGVQEITVKRLYKFVLKKALGKFLAGQLGVDQLDVKFIVLEDDTTSAPPSPGAPPARRGYVQLRDIVMNVEAVNALLTDQPFKLHRGRLGKVEVRVCYEQVLREGMEVA 119          
BLAST of EWM24717.1 vs. NCBI_GenBank
Match: gi|953490877|emb|CEG46531.1| (thiamine pyrophosphokinase [Plasmopara halstedii])

HSP 1 Score: 64.6994 bits (156), Expect = 1.122e-9
Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 0
Query:   18 VKRLYKFVLKKALGKFLAG-QLGVDQLDVKFIVLEDDTTSAPPSPGAPPARRGYVQLRDIVMNVEAVNALLTDQ---PFKLHRGRLGKVEVRVCYEQVLRE 114
            +KRLYKFVLK+ +G+FLA  +L +DQLDV                     R G ++L D+++N E +NA L +    PFK+ +G LG V V + Y  ++ E
Sbjct:  288 LKRLYKFVLKRMIGRFLAADELDLDQLDVHL-------------------RSGRLELCDLLLNAEVLNAELCEAYGLPFKVKKGYLGSVRVAISYTNIMSE 369          
BLAST of EWM24717.1 vs. NCBI_GenBank
Match: gi|570994197|gb|ETP51385.1| (hypothetical protein F442_03482 [Phytophthora parasitica P10297])

HSP 1 Score: 63.5438 bits (153), Expect = 2.843e-9
Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 0
Query:   18 VKRLYKFVLKKALGKFLAG-QLGVDQLDVKFIVLEDDTTSAPPSPGAPPARRGYVQLRDIVMNVEAVNALLTDQ---PFKLHRGRLGKVEVRVCYEQVLRE 114
            +KRLYKFVLK+ +G+FLA  +L +DQLDV                     R G ++L D+++N E +NA L +    PFK+ +G LG V V + Y  ++ E
Sbjct:   12 LKRLYKFVLKRMIGRFLAADELDLDQLDVHL-------------------RSGRLELCDLLLNAEVLNAELCEAQGLPFKVKKGYLGSVRVAISYANIMSE 93          
BLAST of EWM24717.1 vs. NCBI_GenBank
Match: gi|675183563|ref|XP_008900666.1| (hypothetical protein PPTG_08345 [Phytophthora parasitica INRA-310] >gi|568098865|gb|ETN13583.1| hypothetical protein PPTG_08345 [Phytophthora parasitica INRA-310])

HSP 1 Score: 63.5438 bits (153), Expect = 2.843e-9
Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 0
Query:   18 VKRLYKFVLKKALGKFLAG-QLGVDQLDVKFIVLEDDTTSAPPSPGAPPARRGYVQLRDIVMNVEAVNALLTDQ---PFKLHRGRLGKVEVRVCYEQVLRE 114
            +KRLYKFVLK+ +G+FLA  +L +DQLDV                     R G ++L D+++N E +NA L +    PFK+ +G LG V V + Y  ++ E
Sbjct:   12 LKRLYKFVLKRMIGRFLAADELDLDQLDVHL-------------------RSGRLELCDLLLNAEVLNAELCEAQGLPFKVKKGYLGSVRVAISYANIMSE 93          
BLAST of EWM24717.1 vs. NCBI_GenBank
Match: gi|568056451|gb|ETM53163.1| (hypothetical protein L914_03363 [Phytophthora parasitica])

HSP 1 Score: 63.5438 bits (153), Expect = 2.843e-9
Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 0
Query:   18 VKRLYKFVLKKALGKFLAG-QLGVDQLDVKFIVLEDDTTSAPPSPGAPPARRGYVQLRDIVMNVEAVNALLTDQ---PFKLHRGRLGKVEVRVCYEQVLRE 114
            +KRLYKFVLK+ +G+FLA  +L +DQLDV                     R G ++L D+++N E +NA L +    PFK+ +G LG V V + Y  ++ E
Sbjct:   12 LKRLYKFVLKRMIGRFLAADELDLDQLDVHL-------------------RSGRLELCDLLLNAEVLNAELCEAQGLPFKVKKGYLGSVRVAISYANIMSE 93          
BLAST of EWM24717.1 vs. NCBI_GenBank
Match: gi|568025999|gb|ETM00001.1| (hypothetical protein L917_03263 [Phytophthora parasitica])

HSP 1 Score: 63.5438 bits (153), Expect = 2.843e-9
Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 0
Query:   18 VKRLYKFVLKKALGKFLAG-QLGVDQLDVKFIVLEDDTTSAPPSPGAPPARRGYVQLRDIVMNVEAVNALLTDQ---PFKLHRGRLGKVEVRVCYEQVLRE 114
            +KRLYKFVLK+ +G+FLA  +L +DQLDV                     R G ++L D+++N E +NA L +    PFK+ +G LG V V + Y  ++ E
Sbjct:   12 LKRLYKFVLKRMIGRFLAADELDLDQLDVHL-------------------RSGRLELCDLLLNAEVLNAELCEAQGLPFKVKKGYLGSVRVAISYANIMSE 93          
BLAST of EWM24717.1 vs. NCBI_GenBank
Match: gi|566030677|gb|ETI53588.1| (hypothetical protein F443_03500 [Phytophthora parasitica P1569])

HSP 1 Score: 63.5438 bits (153), Expect = 2.843e-9
Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 0
Query:   18 VKRLYKFVLKKALGKFLAG-QLGVDQLDVKFIVLEDDTTSAPPSPGAPPARRGYVQLRDIVMNVEAVNALLTDQ---PFKLHRGRLGKVEVRVCYEQVLRE 114
            +KRLYKFVLK+ +G+FLA  +L +DQLDV                     R G ++L D+++N E +NA L +    PFK+ +G LG V V + Y  ++ E
Sbjct:   12 LKRLYKFVLKRMIGRFLAADELDLDQLDVHL-------------------RSGRLELCDLLLNAEVLNAELCEAQGLPFKVKKGYLGSVRVAISYANIMSE 93          
BLAST of EWM24717.1 vs. NCBI_GenBank
Match: gi|970628964|gb|KUF76380.1| (Autophagy-related protein 2 [Phytophthora nicotianae] >gi|970656335|gb|KUF94359.1| Autophagy-related protein 2 [Phytophthora nicotianae])

HSP 1 Score: 63.5438 bits (153), Expect = 2.956e-9
Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 0
Query:   18 VKRLYKFVLKKALGKFLAG-QLGVDQLDVKFIVLEDDTTSAPPSPGAPPARRGYVQLRDIVMNVEAVNALLTDQ---PFKLHRGRLGKVEVRVCYEQVLRE 114
            +KRLYKFVLK+ +G+FLA  +L +DQLDV                     R G ++L D+++N E +NA L +    PFK+ +G LG V V + Y  ++ E
Sbjct:   12 LKRLYKFVLKRMIGRFLAADELDLDQLDVHL-------------------RSGRLELCDLLLNAEVLNAELCEAQGLPFKVKKGYLGSVRVAISYANIMSE 93          
BLAST of EWM24717.1 vs. NCBI_GenBank
Match: gi|570334344|gb|ETO82292.1| (hypothetical protein F444_03554 [Phytophthora parasitica P1976])

HSP 1 Score: 63.5438 bits (153), Expect = 2.956e-9
Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 0
Query:   18 VKRLYKFVLKKALGKFLAG-QLGVDQLDVKFIVLEDDTTSAPPSPGAPPARRGYVQLRDIVMNVEAVNALLTDQ---PFKLHRGRLGKVEVRVCYEQVLRE 114
            +KRLYKFVLK+ +G+FLA  +L +DQLDV                     R G ++L D+++N E +NA L +    PFK+ +G LG V V + Y  ++ E
Sbjct:   12 LKRLYKFVLKRMIGRFLAADELDLDQLDVHL-------------------RSGRLELCDLLLNAEVLNAELCEAQGLPFKVKKGYLGSVRVAISYANIMSE 93          
BLAST of EWM24717.1 vs. NCBI_GenBank
Match: gi|567996766|gb|ETL46868.1| (hypothetical protein L916_03323 [Phytophthora parasitica])

HSP 1 Score: 63.5438 bits (153), Expect = 2.956e-9
Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 0
Query:   18 VKRLYKFVLKKALGKFLAG-QLGVDQLDVKFIVLEDDTTSAPPSPGAPPARRGYVQLRDIVMNVEAVNALLTDQ---PFKLHRGRLGKVEVRVCYEQVLRE 114
            +KRLYKFVLK+ +G+FLA  +L +DQLDV                     R G ++L D+++N E +NA L +    PFK+ +G LG V V + Y  ++ E
Sbjct:   12 LKRLYKFVLKRMIGRFLAADELDLDQLDVHL-------------------RSGRLELCDLLLNAEVLNAELCEAQGLPFKVKKGYLGSVRVAISYANIMSE 93          
The following BLAST results are available for this feature:
BLAST of EWM24717.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106251|gb|EWM24717.1|6.994e-80100.00hypothetical protein Naga_100978g4, partial [Nanno... [more]
gi|953490877|emb|CEG46531.1|1.122e-937.62thiamine pyrophosphokinase [Plasmopara halstedii][more]
gi|570994197|gb|ETP51385.1|2.843e-937.62hypothetical protein F442_03482 [Phytophthora para... [more]
gi|675183563|ref|XP_008900666.1|2.843e-937.62hypothetical protein PPTG_08345 [Phytophthora para... [more]
gi|568056451|gb|ETM53163.1|2.843e-937.62hypothetical protein L914_03363 [Phytophthora para... [more]
gi|568025999|gb|ETM00001.1|2.843e-937.62hypothetical protein L917_03263 [Phytophthora para... [more]
gi|566030677|gb|ETI53588.1|2.843e-937.62hypothetical protein F443_03500 [Phytophthora para... [more]
gi|970628964|gb|KUF76380.1|2.956e-937.62Autophagy-related protein 2 [Phytophthora nicotian... [more]
gi|570334344|gb|ETO82292.1|2.956e-937.62hypothetical protein F444_03554 [Phytophthora para... [more]
gi|567996766|gb|ETL46868.1|2.956e-937.62hypothetical protein L916_03323 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5972rna5972Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications