EWM24719.1, cds5949 (CDS) Nannochloropsis gaditana

Overview
NameEWM24719.1
Unique Namecds5949
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:220138..220399 +
Alignment locationCM002467.1:220668..220927 +
Alignment locationCM002467.1:221127..221219 +
Alignment locationCM002467.1:221337..221477 +
Alignment locationCM002467.1:221902..221964 +
Alignment locationCM002467.1:222130..222236 +
Alignment locationCM002467.1:222394..222553 +
Alignment locationCM002467.1:222759..222862 +
Alignment locationCM002467.1:223015..223102 +
Alignment locationCM002467.1:223267..223341 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24719.1
Productbeta tubulin
Orig transcript idgnl|cribi|Naga_100180g4.4032.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:220138..220399 +
CM002467.1supercontigCM002467.1:220668..220927 +
CM002467.1supercontigCM002467.1:221127..221219 +
CM002467.1supercontigCM002467.1:221337..221477 +
CM002467.1supercontigCM002467.1:221902..221964 +
CM002467.1supercontigCM002467.1:222130..222236 +
CM002467.1supercontigCM002467.1:222394..222553 +
CM002467.1supercontigCM002467.1:222759..222862 +
CM002467.1supercontigCM002467.1:223015..223102 +
CM002467.1supercontigCM002467.1:223267..223341 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005198structural molecule activity
GO:0000166nucleotide binding
GO:0003924GTPase activity
GO:0005200structural constituent of cytoskeleton
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0051258protein polymerization
GO:0007017microtubule-based process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005856cytoskeleton
GO:0005874microtubule
Vocabulary: INTERPRO
TermDefinition
IPR008280Tub_FtsZ_C
IPR013838Beta-tubulin_BS
IPR017975Tubulin_CS
IPR023123Tubulin_C
IPR018316Tubulin/FtsZ_2-layer-sand-dom
IPR003008Tubulin_FtsZ_GTPase
IPR000217Tubulin
IPR002453Beta_tubulin
Homology
BLAST of EWM24719.1 vs. NCBI_GenBank
Match: gi|585106254|gb|EWM24719.1| (beta tubulin [Nannochloropsis gaditana])

HSP 1 Score: 949.118 bits (2452), Expect = 0.000e+0
Identity = 450/450 (100.00%), Postives = 450/450 (100.00%), Query Frame = 0
Query:    1 MREILHIQAGQCGNQIGCKFWEVISAEHGIQPDGSYKGESATQLERIDVYYREANSGRYVPRALLIDLEPGTMDSARSSAYGGLFRPDNFIYGQSGAGNNWAKGHYTEGAELLDTVLDALRKEVESCDCLQGFQMTHSLGGGTGSGLGTLLMSKVKEEFPDRILSSYAVIPSAKVSDTVVEPYNAMLSVHQLVENADQCFILDNEALYNICLRTLKLVNPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDLRKLSVNMVPFPRLHFFSVGFAPLTCSASQDYRTLTVAELTQQAFDAKNMMCASDPRHGRYLTCACMFRGQISAHDMDVQMSQTVSKNSAAFVEWIPNNIKASICNVPPVGMKMSATFVGNNTAIQSVWKRIADQFGLMFSRKAFLHWYTGEGMEELEFTEADSNLQDLIAEYQQYQDAMVDEEEIEADIYGHGYTLQEAT 450
            MREILHIQAGQCGNQIGCKFWEVISAEHGIQPDGSYKGESATQLERIDVYYREANSGRYVPRALLIDLEPGTMDSARSSAYGGLFRPDNFIYGQSGAGNNWAKGHYTEGAELLDTVLDALRKEVESCDCLQGFQMTHSLGGGTGSGLGTLLMSKVKEEFPDRILSSYAVIPSAKVSDTVVEPYNAMLSVHQLVENADQCFILDNEALYNICLRTLKLVNPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDLRKLSVNMVPFPRLHFFSVGFAPLTCSASQDYRTLTVAELTQQAFDAKNMMCASDPRHGRYLTCACMFRGQISAHDMDVQMSQTVSKNSAAFVEWIPNNIKASICNVPPVGMKMSATFVGNNTAIQSVWKRIADQFGLMFSRKAFLHWYTGEGMEELEFTEADSNLQDLIAEYQQYQDAMVDEEEIEADIYGHGYTLQEAT
Sbjct:    1 MREILHIQAGQCGNQIGCKFWEVISAEHGIQPDGSYKGESATQLERIDVYYREANSGRYVPRALLIDLEPGTMDSARSSAYGGLFRPDNFIYGQSGAGNNWAKGHYTEGAELLDTVLDALRKEVESCDCLQGFQMTHSLGGGTGSGLGTLLMSKVKEEFPDRILSSYAVIPSAKVSDTVVEPYNAMLSVHQLVENADQCFILDNEALYNICLRTLKLVNPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDLRKLSVNMVPFPRLHFFSVGFAPLTCSASQDYRTLTVAELTQQAFDAKNMMCASDPRHGRYLTCACMFRGQISAHDMDVQMSQTVSKNSAAFVEWIPNNIKASICNVPPVGMKMSATFVGNNTAIQSVWKRIADQFGLMFSRKAFLHWYTGEGMEELEFTEADSNLQDLIAEYQQYQDAMVDEEEIEADIYGHGYTLQEAT 450          
BLAST of EWM24719.1 vs. NCBI_GenBank
Match: gi|553179673|ref|XP_005852742.1| (tubulin beta [Nannochloropsis gaditana CCMP526] >gi|422295792|gb|EKU23091.1| tubulin beta [Nannochloropsis gaditana CCMP526] >gi|585110951|gb|EWM28533.1| beta-tubulin [Nannochloropsis gaditana])

HSP 1 Score: 721.465 bits (1861), Expect = 0.000e+0
Identity = 327/428 (76.40%), Postives = 385/428 (89.95%), Query Frame = 0
Query:    1 MREILHIQAGQCGNQIGCKFWEVISAEHGIQPDGSYKGESATQLERIDVYYREANSGRYVPRALLIDLEPGTMDSARSSAYGGLFRPDNFIYGQSGAGNNWAKGHYTEGAELLDTVLDALRKEVESCDCLQGFQMTHSLGGGTGSGLGTLLMSKVKEEFPDRILSSYAVIPSAKVSDTVVEPYNAMLSVHQLVENADQCFILDNEALYNICLRTLKLVNPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDLRKLSVNMVPFPRLHFFSVGFAPLTCSASQDYRTLTVAELTQQAFDAKNMMCASDPRHGRYLTCACMFRGQISAHDMDVQMSQTVSKNSAAFVEWIPNNIKASICNVPPVGMKMSATFVGNNTAIQSVWKRIADQFGLMFSRKAFLHWYTGEGMEELEFTEADSNLQDLIAEYQQYQDA 428
            MREI+H+QAGQCGNQIG KFWEVI+ EHG+ P G+Y G+S  QLERI+VY+ EA  GRYVPRA+L+DLEPGTMDS R+  +G LFRPDNF++GQ+GAGNNWAKGHYTEGAEL+D+VLD +RKE ESCDCLQGFQ+THS+GGGTG+G+GTLL+SK++EE+PDR++S+Y++IPS KVSDTVVEPYNA LSVHQLVENADQCF+LDNEALY+IC RTLKL  PTYGDLNHLVSAA+CGTTCSLRFPGQLNCDLRKL+VNMVPFPRLHFF +GFAPLT   SQ YR LTV ELTQQ FDAKNMMCA+DPRHGRYLTCACMFRG++S  ++D QM   V+KNS+ FVEWIPNN+KASIC++PP G+KMS TF+GN+TA+Q VWKR++DQF  MF RKAFLHWYTGEGM+E+EFTEA+SN+ DL++EYQQYQDA
Sbjct:    1 MREIVHVQAGQCGNQIGAKFWEVIADEHGVDPTGAYHGDSDLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSMGGGTGAGMGTLLISKIREEYPDRVMSTYSIIPSPKVSDTVVEPYNATLSVHQLVENADQCFVLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQQFDAKNMMCAADPRHGRYLTCACMFRGRMSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMSTTFIGNSTAVQEVWKRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428          
BLAST of EWM24719.1 vs. NCBI_GenBank
Match: gi|267078|sp|P30156.1|TBB5_ECTVR (RecName: Full=Tubulin beta-5 chain; AltName: Full=Beta-5-tubulin >gi|167993|gb|AAA33284.1| beta-tubulin [Ectocarpus variabilis] >gi|298708739|emb|CBJ30701.1| beta tubulin [Ectocarpus siliculosus])

HSP 1 Score: 714.146 bits (1842), Expect = 0.000e+0
Identity = 330/428 (77.10%), Postives = 380/428 (88.79%), Query Frame = 0
Query:    1 MREILHIQAGQCGNQIGCKFWEVISAEHGIQPDGSYKGESATQLERIDVYYREANSGRYVPRALLIDLEPGTMDSARSSAYGGLFRPDNFIYGQSGAGNNWAKGHYTEGAELLDTVLDALRKEVESCDCLQGFQMTHSLGGGTGSGLGTLLMSKVKEEFPDRILSSYAVIPSAKVSDTVVEPYNAMLSVHQLVENADQCFILDNEALYNICLRTLKLVNPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDLRKLSVNMVPFPRLHFFSVGFAPLTCSASQDYRTLTVAELTQQAFDAKNMMCASDPRHGRYLTCACMFRGQISAHDMDVQMSQTVSKNSAAFVEWIPNNIKASICNVPPVGMKMSATFVGNNTAIQSVWKRIADQFGLMFSRKAFLHWYTGEGMEELEFTEADSNLQDLIAEYQQYQDA 428
            MREI+H+QAGQCGNQIG KFWEVIS EHGI P GSY G+S  QLERI+ Y+ EA  GRYVPRA+L+DLEPGTMDS R+  +G LFRPDNF++GQ+GAGNNWAKGHYTEGAEL+D+VLD +RKE ESCD LQGFQ+THS+GGGTG+G+GTLL+SKV+EE+PDR++S+Y+VIPS KVSDTVVEPYNA LSVHQLVENADQCF LDNEALY+IC RTLKL  PTYGDLNHLVSAA+CGTTCSLRFPGQLNCDLRKL+VNMVPFPRLHFF +GFAPLT   SQ YR LTV ELTQQ FD+KNMMCA+DPRHGRYLTCA MFRG++S  ++D QM   V+KNS+ FVEWIPNN+KASIC++PP G+KMS TFVGN TAIQ VWKR+A+QF  MF RKAFLHWYTGEGM+E+EFTEA+SN+ DL++EYQQYQDA
Sbjct:    1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIDPTGSYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRVMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTSMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428          
BLAST of EWM24719.1 vs. NCBI_GenBank
Match: gi|267080|sp|P30157.1|TBB6_ECTVR (RecName: Full=Tubulin beta-6 chain; AltName: Full=Beta-6-tubulin >gi|167995|gb|AAA33285.1| beta-tubulin [Ectocarpus variabilis])

HSP 1 Score: 713.761 bits (1841), Expect = 0.000e+0
Identity = 330/428 (77.10%), Postives = 380/428 (88.79%), Query Frame = 0
Query:    1 MREILHIQAGQCGNQIGCKFWEVISAEHGIQPDGSYKGESATQLERIDVYYREANSGRYVPRALLIDLEPGTMDSARSSAYGGLFRPDNFIYGQSGAGNNWAKGHYTEGAELLDTVLDALRKEVESCDCLQGFQMTHSLGGGTGSGLGTLLMSKVKEEFPDRILSSYAVIPSAKVSDTVVEPYNAMLSVHQLVENADQCFILDNEALYNICLRTLKLVNPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDLRKLSVNMVPFPRLHFFSVGFAPLTCSASQDYRTLTVAELTQQAFDAKNMMCASDPRHGRYLTCACMFRGQISAHDMDVQMSQTVSKNSAAFVEWIPNNIKASICNVPPVGMKMSATFVGNNTAIQSVWKRIADQFGLMFSRKAFLHWYTGEGMEELEFTEADSNLQDLIAEYQQYQDA 428
            MREI+H+QAGQCGNQIG KFWEVIS EHGI P G Y G+S  QLERI+ Y+ EA +GRYVPRA+L+DLEPGTMDS R+  +G LFRPDNF++GQ+GAGNNWAKGHYTEGAEL+D+VLD +RKE ESCD LQGFQ+THS+GGGTG+G+GTLL+SKV+EE+PDRI+S+Y+VIPS KVSDTVVEPYNA LSVHQLVENADQCF LDNEALY+IC RTLKL  PTYGDLNHLVSAA+CGTTCSLRFPGQLNCDLRKL+VNMVPFPRLHFF +GFAPLT   SQ YR LTV ELTQQ FD+KNMMCA+DPRHGRYLTCA MFRG++S  ++D QM   V+KNS+ FVEWIPNN+KASIC++PP G+KMS TFVGN TAIQ VWKR+A+QF  MF RKAFLHWYTGEGM+E+EFTEA+SN+ DL++EYQQYQDA
Sbjct:    1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIDPTGRYHGDSDLQLERINCYFNEATAGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRIMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428          
BLAST of EWM24719.1 vs. NCBI_GenBank
Match: gi|676384347|ref|XP_009035452.1| (tubulin beta chain [Aureococcus anophagefferens] >gi|676386943|ref|XP_009036750.1| tubulin beta chain [Aureococcus anophagefferens] >gi|676391591|ref|XP_009039073.1| tubulin beta chain [Aureococcus anophagefferens] >gi|323450235|gb|EGB06117.1| tubulin beta chain [Aureococcus anophagefferens] >gi|323452892|gb|EGB08765.1| tubulin beta chain [Aureococcus anophagefferens] >gi|323453505|gb|EGB09376.1| tubulin beta chain [Aureococcus anophagefferens])

HSP 1 Score: 713.761 bits (1841), Expect = 0.000e+0
Identity = 323/428 (75.47%), Postives = 382/428 (89.25%), Query Frame = 0
Query:    1 MREILHIQAGQCGNQIGCKFWEVISAEHGIQPDGSYKGESATQLERIDVYYREANSGRYVPRALLIDLEPGTMDSARSSAYGGLFRPDNFIYGQSGAGNNWAKGHYTEGAELLDTVLDALRKEVESCDCLQGFQMTHSLGGGTGSGLGTLLMSKVKEEFPDRILSSYAVIPSAKVSDTVVEPYNAMLSVHQLVENADQCFILDNEALYNICLRTLKLVNPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDLRKLSVNMVPFPRLHFFSVGFAPLTCSASQDYRTLTVAELTQQAFDAKNMMCASDPRHGRYLTCACMFRGQISAHDMDVQMSQTVSKNSAAFVEWIPNNIKASICNVPPVGMKMSATFVGNNTAIQSVWKRIADQFGLMFSRKAFLHWYTGEGMEELEFTEADSNLQDLIAEYQQYQDA 428
            MREI+HIQ GQCGNQIG KFWEVIS EHG+ P G+Y G+S  QLERI+VYY EA  GRYVPRA+L+DLEPGTMDS R+  +G LFRPDNF++GQ+GAGNNWAKGHYTEGAEL+D+VLD +RKE ESCDCLQGFQ+THS+GGGTG+G+GTLL+SK++EE+PDR++S+Y+VIPS KVSDTVVEPYNA LSVHQLVEN+DQCF LDNEALY+IC RTLKL  PTYGDLNHL++AA+CGTTCSLRFPGQLNCDLRKL+VNMVPFPRLHFF VGFAPLT   SQ YR LTV ELTQQ FDAKNMMCA+DPRHGRYLTC+C+FRG++S  ++D QM   ++KNS+ FVEWIPNN+K++IC++PP G+KMS TF+GN+TAIQ  WKR+A+QF  MF RKAFLHWYTGEGM+E+EFTEA+SN+ DL++EYQQYQDA
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDSDLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSMGGGTGAGMGTLLISKIREEYPDRVMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENSDQCFTLDNEALYDICFRTLKLTTPTYGDLNHLIAAALCGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQQFDAKNMMCAADPRHGRYLTCSCLFRGRMSTKEVDEQMLNVINKNSSYFVEWIPNNVKSAICDIPPKGLKMSTTFIGNSTAIQETWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428          
BLAST of EWM24719.1 vs. NCBI_GenBank
Match: gi|299471584|emb|CBN79446.1| (beta tubulin [Ectocarpus siliculosus])

HSP 1 Score: 713.761 bits (1841), Expect = 0.000e+0
Identity = 331/428 (77.34%), Postives = 379/428 (88.55%), Query Frame = 0
Query:    1 MREILHIQAGQCGNQIGCKFWEVISAEHGIQPDGSYKGESATQLERIDVYYREANSGRYVPRALLIDLEPGTMDSARSSAYGGLFRPDNFIYGQSGAGNNWAKGHYTEGAELLDTVLDALRKEVESCDCLQGFQMTHSLGGGTGSGLGTLLMSKVKEEFPDRILSSYAVIPSAKVSDTVVEPYNAMLSVHQLVENADQCFILDNEALYNICLRTLKLVNPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDLRKLSVNMVPFPRLHFFSVGFAPLTCSASQDYRTLTVAELTQQAFDAKNMMCASDPRHGRYLTCACMFRGQISAHDMDVQMSQTVSKNSAAFVEWIPNNIKASICNVPPVGMKMSATFVGNNTAIQSVWKRIADQFGLMFSRKAFLHWYTGEGMEELEFTEADSNLQDLIAEYQQYQDA 428
            MREI+H+QAGQCGNQIG KFWEVIS EHGI P G Y G+S  QLERI+ Y+ EA  GRYVPRA+L+DLEPGTMDS R+  +G LFRPDNF++GQ+GAGNNWAKGHYTEGAEL+D+VLD +RKE ESCD LQGFQ+THS+GGGTG+G+GTLL+SKV+EE+PDRI+S+Y+VIPS KVSDTVVEPYNA LSVHQLVENADQCF LDNEALY+IC RTLKL  PTYGDLNHLVSAA+CGTTCSLRFPGQLNCDLRKL+VNMVPFPRLHFF +GFAPLT   SQ YR LTV ELTQQ FD+KNMMCA+DPRHGRYLTCA MFRG++S  ++D QM   V+KNS+ FVEWIPNN+KASIC+VPP G+KMS TFVGN TAIQ VWKR+A+QF  MF RKAFLHWYTGEGM+E+EFTEA+SN+ DL++EYQQYQDA
Sbjct:    1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRIMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDVPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428          
BLAST of EWM24719.1 vs. NCBI_GenBank
Match: gi|298707748|emb|CBJ26065.1| (beta tubulin [Ectocarpus siliculosus])

HSP 1 Score: 713.761 bits (1841), Expect = 0.000e+0
Identity = 330/428 (77.10%), Postives = 380/428 (88.79%), Query Frame = 0
Query:    1 MREILHIQAGQCGNQIGCKFWEVISAEHGIQPDGSYKGESATQLERIDVYYREANSGRYVPRALLIDLEPGTMDSARSSAYGGLFRPDNFIYGQSGAGNNWAKGHYTEGAELLDTVLDALRKEVESCDCLQGFQMTHSLGGGTGSGLGTLLMSKVKEEFPDRILSSYAVIPSAKVSDTVVEPYNAMLSVHQLVENADQCFILDNEALYNICLRTLKLVNPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDLRKLSVNMVPFPRLHFFSVGFAPLTCSASQDYRTLTVAELTQQAFDAKNMMCASDPRHGRYLTCACMFRGQISAHDMDVQMSQTVSKNSAAFVEWIPNNIKASICNVPPVGMKMSATFVGNNTAIQSVWKRIADQFGLMFSRKAFLHWYTGEGMEELEFTEADSNLQDLIAEYQQYQDA 428
            MREI+H+QAGQCGNQIG KFWEVIS EHGI P G+Y G+S  QLERI+ Y+ EA  GRYVPRA+L+DLEPGTMDS R+  +G LFRPDNF++GQ+GAGNNWAKGHYTEGAEL+D+VLD +RKE ESCD LQGFQ+THS+GGGTG+G+GTLL+SKV+EE+PDRI+S+Y+VIPS KVSDTVVEPYNA LSVHQLVENADQCF LDNEALY+IC RTLKL  PTYGDLNHLVSAA+CGTTCSLRFPGQLNCDLRKL+VNMVPFPRLHFF +GFAPLT   SQ YR LTV ELTQQ FD+KNMMCA+DPRHGRYLTCA MFRG++S  ++D QM   V+KNS+ FVEWIPNN+KASIC++PP G+KMS TFVGN TAIQ VWKR+A+QF  MF RKAFLHWYTGEGM+E+EFTEA+SN+ DL++EYQQYQDA
Sbjct:    1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIDPTGAYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRIMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQMLNVVNKNSSYFVEWIPNNVKASICDIPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDA 428          
BLAST of EWM24719.1 vs. NCBI_GenBank
Match: gi|299471583|emb|CBN79445.1| (beta tubulin [Ectocarpus siliculosus])

HSP 1 Score: 711.449 bits (1835), Expect = 0.000e+0
Identity = 330/429 (76.92%), Postives = 380/429 (88.58%), Query Frame = 0
Query:    2 REILHIQAGQCGNQIGCKFWEVISAEHGIQPDGSYKGESATQLERIDVYYREANSGRYVPRALLIDLEPGTMDSARSSAYGGLFRPDNFIYGQSGAGNNWAKGHYTEGAELLDTVLDALRKEVESCDCLQGFQMTHSLGGGTGSGLGTLLMSKVKEEFPDRILSSYAVIPSAKVSDTVVEPYNAMLSVHQLVENADQCFILDNEALYNICLRTLKLVNPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDLRKLSVNMVPFPRLHFFSVGFAPLTCSASQDYRTLTVAELTQQAFDAKNMMCASDPRHGRYLTCACMFRGQISAHDMDVQMSQTVSKNSAAFVEWIPNNIKASICNVPPVGMKMSATFVGNNTAIQSVWKRIADQFGLMFSRKAFLHWYTGEGMEELEFTEADSNLQDLIAEYQQYQDAMV 430
            REI+H+QAGQCGNQIG KFWEVIS EHGI P G Y G+S  QLERI+ Y+ EA+ GRYVPRA+L+DLEPGTMDS RS  +G LFRPDNF++GQ+GAGNNWAKGHYTEGAEL+D+VLD +RKE ESCD LQGFQ+THS+GGGTG+G+GTLL+SKV+EE+PDRI+S+Y+VIPS KVSDTVVEPYNA LSVHQLVENADQCF LDNEALY+IC RTLKL  PTYGDLNHLVSAA+CGTTCSLRFPGQLNCDLRKL+VNMVPFPRLHFF +GFAPLT   SQ YR L+V ELTQQ FD+KNMMCA+DPRHGRYLTCA MFRG++S  ++D QM   V+KNS+ FVEWIPNN+KASIC+VPP G+KMS TFVGN TAIQ VWKR+A+QF  MF RKAFLHWYTGEGM+E+EFTEA+SN+ DL++EYQQYQDA +
Sbjct:    3 REIVHVQAGQCGNQIGSKFWEVISDEHGIDPTGVYHGDSDLQLERINCYFNEASGGRYVPRAILMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDSLQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRIMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDICFRTLKLTTPTYGDLNHLVSAAICGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFMIGFAPLTSRNSQQYRALSVPELTQQCFDSKNMMCAADPRHGRYLTCAVMFRGRMSTKEVDEQMLAVVNKNSSYFVEWIPNNVKASICDVPPKGLKMSTTFVGNTTAIQEVWKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATI 431          
BLAST of EWM24719.1 vs. NCBI_GenBank
Match: gi|219120997|ref|XP_002185730.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582579|gb|ACI65200.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 711.064 bits (1834), Expect = 0.000e+0
Identity = 330/443 (74.49%), Postives = 387/443 (87.36%), Query Frame = 0
Query:    1 MREILHIQAGQCGNQIGCKFWEVISAEHGIQPDGSYKGESATQLERIDVYYREANSGRYVPRALLIDLEPGTMDSARSSAYGGLFRPDNFIYGQSGAGNNWAKGHYTEGAELLDTVLDALRKEVESCDCLQGFQMTHSLGGGTGSGLGTLLMSKVKEEFPDRILSSYAVIPSAKVSDTVVEPYNAMLSVHQLVENADQCFILDNEALYNICLRTLKLVNPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDLRKLSVNMVPFPRLHFFSVGFAPLTCSASQDYRTLTVAELTQQAFDAKNMMCASDPRHGRYLTCACMFRGQISAHDMDVQMSQTVSKNSAAFVEWIPNNIKASICNVPPVGMKMSATFVGNNTAIQSVWKRIADQFGLMFSRKAFLHWYTGEGMEELEFTEADSNLQDLIAEYQQYQDAMVDEEEIEADIYGHG 443
            MRE++HIQAGQCGNQIG KFWEV+SAEHGI  DG+Y G++  QL+RIDVY+ E   GRYVPRA+L DLEPGTMDS R   +G LFRPDNF++GQSGAGNNWAKGHYTEGAEL+D+V++ +RKE ESCD LQGFQ+THS+GGGTGSG+GTLL+SK+KEE+PDRILS+Y+V+PS KVSDTVVEPYNA LS+HQLVENADQCF LDNEALY+IC RTLKL NP+YGDLN L++ A+ GTTCSLRFPGQLNCDLRKL+VNMVPFPRLHFF VGFAPLT + SQ +R LTV ELTQQAFDAKNMMCA+DPRHGRYLTCA MFRG +S+ ++D QM Q VSKNS+ FVEWIPNN+KASIC++PP G+ MS+ F+GN+TAIQ  WKR+ADQF +MF RKA+LHWYTGEGM+E+EFTEA+SNL DL++EYQQYQDA  DEE+I  D    G
Sbjct:    1 MREVVHIQAGQCGNQIGAKFWEVMSAEHGIAGDGTYHGDNPLQLQRIDVYFHEGMEGRYVPRAVLTDLEPGTMDSIRGGPFGDLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVMEVIRKESESCDVLQGFQLTHSMGGGTGSGMGTLLVSKIKEEYPDRILSTYSVVPSPKVSDTVVEPYNATLSIHQLVENADQCFALDNEALYDICFRTLKLSNPSYGDLNQLIANAITGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFLVGFAPLTAAGSQSFRVLTVPELTQQAFDAKNMMCAADPRHGRYLTCAMMFRGTMSSKEVDDQMLQMVSKNSSYFVEWIPNNLKASICDIPPKGLAMSSVFIGNSTAIQEAWKRVADQFTVMFRRKAYLHWYTGEGMDEMEFTEAESNLNDLVSEYQQYQDATADEEDISGDFEDEG 443          
BLAST of EWM24719.1 vs. NCBI_GenBank
Match: gi|1072232918|gb|OEU17649.1| (putative beta tubulin [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 709.909 bits (1831), Expect = 0.000e+0
Identity = 329/444 (74.10%), Postives = 386/444 (86.94%), Query Frame = 0
Query:    1 MREILHIQAGQCGNQIGCKFWEVISAEHGIQPDGSYKGESATQLERIDVYYREANSGRYVPRALLIDLEPGTMDSARSSAYGGLFRPDNFIYGQSGAGNNWAKGHYTEGAELLDTVLDALRKEVESCDCLQGFQMTHSLGGGTGSGLGTLLMSKVKEEFPDRILSSYAVIPSAKVSDTVVEPYNAMLSVHQLVENADQCFILDNEALYNICLRTLKLVNPTYGDLNHLVSAAMCGTTCSLRFPGQLNCDLRKLSVNMVPFPRLHFFSVGFAPLTCSASQDYRTLTVAELTQQAFDAKNMMCASDPRHGRYLTCACMFRGQISAHDMDVQMSQTVSKNSAAFVEWIPNNIKASICNVPPVGMKMSATFVGNNTAIQSVWKRIADQFGLMFSRKAFLHWYTGEGMEELEFTEADSNLQDLIAEYQQYQDAMVDEEEIEADIYGHGY 444
            MREI+H+QAGQCGNQIG KFWEV+SAEHGI P G Y G++  QL+RI+VY+ E   GRYVPRA+L DLEPGTMDS RS  YG LFRPDNFI+GQSGAGNNWAKGHYTEGAEL+D++++ +RKE E CD LQGFQ THS+GGGTGSG+GTLL+SK+KEE+PDRI+S+Y+VIPS KVSDTVVEPYNA LS+HQLVENADQC+ LDNEALY+IC +TLKL NPTY DLNHL++ A+ GTTCSLRFPGQLNCDLRKL+VNMVPFPRLHFF VGFAPLT  +SQ +R LTV ELTQQAFDAKNMMCA+DPRHGRYLTCA MFRG +S+ ++D +M Q V+K+S+ FVEWIPNN+KASIC+VPP G+KMS+ F+GN+TAIQ  WKR+ADQF +MF RKAFLHWYTGEGM+E+EFTEA+SNL DL++EYQQYQDA  DEE+I  D     Y
Sbjct:    1 MREIVHVQAGQCGNQIGAKFWEVMSAEHGISPTGDYIGDNELQLQRINVYFNEGQEGRYVPRAILTDLEPGTMDSIRSGVYGSLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSIMECVRKEAEGCDMLQGFQATHSMGGGTGSGMGTLLVSKIKEEYPDRIISTYSVIPSPKVSDTVVEPYNATLSIHQLVENADQCYALDNEALYDICFKTLKLANPTYSDLNHLIANAITGTTCSLRFPGQLNCDLRKLAVNMVPFPRLHFFLVGFAPLTAFSSQSFRVLTVPELTQQAFDAKNMMCAADPRHGRYLTCAMMFRGSMSSEEVDNEMLQMVNKHSSYFVEWIPNNLKASICDVPPKGLKMSSVFIGNSTAIQEAWKRVADQFTVMFRRKAFLHWYTGEGMDEMEFTEAESNLNDLVSEYQQYQDATADEEDISGDFDDEAY 444          
The following BLAST results are available for this feature:
BLAST of EWM24719.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106254|gb|EWM24719.1|0.000e+0100.00beta tubulin [Nannochloropsis gaditana][more]
gi|553179673|ref|XP_005852742.1|0.000e+076.40tubulin beta [Nannochloropsis gaditana CCMP526] >g... [more]
gi|267078|sp|P30156.1|TBB5_ECTVR0.000e+077.10RecName: Full=Tubulin beta-5 chain; AltName: Full=... [more]
gi|267080|sp|P30157.1|TBB6_ECTVR0.000e+077.10RecName: Full=Tubulin beta-6 chain; AltName: Full=... [more]
gi|676384347|ref|XP_009035452.1|0.000e+075.47tubulin beta chain [Aureococcus anophagefferens] >... [more]
gi|299471584|emb|CBN79446.1|0.000e+077.34beta tubulin [Ectocarpus siliculosus][more]
gi|298707748|emb|CBJ26065.1|0.000e+077.10beta tubulin [Ectocarpus siliculosus][more]
gi|299471583|emb|CBN79445.1|0.000e+076.92beta tubulin [Ectocarpus siliculosus][more]
gi|219120997|ref|XP_002185730.1|0.000e+074.49predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072232918|gb|OEU17649.1|0.000e+074.10putative beta tubulin [Fragilariopsis cylindrus CC... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5964rna5964Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications