EWM24739.1, cds5938 (CDS) Nannochloropsis gaditana

Overview
NameEWM24739.1
Unique Namecds5938
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:197090..197126 -
Alignment locationCM002467.1:196873..196929 -
Alignment locationCM002467.1:196265..196628 -
Alignment locationCM002467.1:195937..196111 -
Alignment locationCM002467.1:195371..195747 -
Alignment locationCM002467.1:195226..195298 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24739.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100272g7.10157.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:197090..197126 -
CM002467.1supercontigCM002467.1:196873..196929 -
CM002467.1supercontigCM002467.1:196265..196628 -
CM002467.1supercontigCM002467.1:195937..196111 -
CM002467.1supercontigCM002467.1:195371..195747 -
CM002467.1supercontigCM002467.1:195226..195298 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM24739.1 vs. NCBI_GenBank
Match: gi|585106277|gb|EWM24739.1| (hypothetical protein Naga_100272g7 [Nannochloropsis gaditana])

HSP 1 Score: 741.88 bits (1914), Expect = 0.000e+0
Identity = 360/360 (100.00%), Postives = 360/360 (100.00%), Query Frame = 0 
Query:    1 MAITKEILAHGTVKIAWLVTFPLIWVGLFTKGWFDFAYKGNPEDESLAFRNDYTAQYGLFGIDFETPEGIVRTGYSGWAVANSAHPNAYLSIHGSRVTAIISAVACILTAVTYLHSKKAPAEASVYIMGRCAWLATLDLALNLTTLGLWSITANSPAFNTVCEHQGCFALPTENVSNSTLSYTWGLLLVRVAFQILLAAAIVHMTLAKRASLNVGFPNPLKLEMEKSRGERRRIMVSSSGTMLQSSFRHRGSWRADDAVRGGKEYLVLNTIPRARQMGSNRKYERDGSIWGVRIDMERCEERFAWGNEPDKLKTLINWENWEMIGELGRNLGEGGGRALSISSLVETTLTTTKMELREKK 360
            MAITKEILAHGTVKIAWLVTFPLIWVGLFTKGWFDFAYKGNPEDESLAFRNDYTAQYGLFGIDFETPEGIVRTGYSGWAVANSAHPNAYLSIHGSRVTAIISAVACILTAVTYLHSKKAPAEASVYIMGRCAWLATLDLALNLTTLGLWSITANSPAFNTVCEHQGCFALPTENVSNSTLSYTWGLLLVRVAFQILLAAAIVHMTLAKRASLNVGFPNPLKLEMEKSRGERRRIMVSSSGTMLQSSFRHRGSWRADDAVRGGKEYLVLNTIPRARQMGSNRKYERDGSIWGVRIDMERCEERFAWGNEPDKLKTLINWENWEMIGELGRNLGEGGGRALSISSLVETTLTTTKMELREKK
Sbjct:    1 MAITKEILAHGTVKIAWLVTFPLIWVGLFTKGWFDFAYKGNPEDESLAFRNDYTAQYGLFGIDFETPEGIVRTGYSGWAVANSAHPNAYLSIHGSRVTAIISAVACILTAVTYLHSKKAPAEASVYIMGRCAWLATLDLALNLTTLGLWSITANSPAFNTVCEHQGCFALPTENVSNSTLSYTWGLLLVRVAFQILLAAAIVHMTLAKRASLNVGFPNPLKLEMEKSRGERRRIMVSSSGTMLQSSFRHRGSWRADDAVRGGKEYLVLNTIPRARQMGSNRKYERDGSIWGVRIDMERCEERFAWGNEPDKLKTLINWENWEMIGELGRNLGEGGGRALSISSLVETTLTTTKMELREKK 360
[Close]
BLAST of EWM24739.1 vs. NCBI_GenBank
Match: gi|553180700|ref|XP_005853448.1| (hypothetical protein NGA_0179402 [Nannochloropsis gaditana CCMP526] >gi|422295615|gb|EKU22914.1| hypothetical protein NGA_0179402 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 263.077 bits (671), Expect = 3.190e-85
Identity = 133/153 (86.93%), Postives = 133/153 (86.93%), Query Frame = 0 
Query:    1 MAITKEILAHGTVKIAWLVTFPLIWVGLFTKGWFDFAYKGNPEDESLAFRNDYTAQYGLFGIDFETPEGIVRTGYSGWAVANSAHPNAYLSIHGSRVTAIISAVACILTAVTYLHSKKAPAEASVYIMGRCAWLATLDLALNLTTLGLWSITA 153
            MAITKEILAHGT                   GWFDFAYKGNPE ESLAFRNDYTAQYGLFGIDFETPEGIVRTGYSGWAVANSAHPNAYLSIHGSRVTAIISAVACILTAVTYLHSKKAPAEASVYIMGRCAWLATLDLALNLTTLGLWSITA
Sbjct:    1 MAITKEILAHGT-------------------GWFDFAYKGNPEAESLAFRNDYTAQYGLFGIDFETPEGIVRTGYSGWAVANSAHPNAYLSIHGSRVTAIISAVACILTAVTYLHSKKAPAEASVYIMGRCAWLATLDLALNLTTLGLWSITA 134
The following BLAST results are available for this feature:
BLAST of EWM24739.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585106277|gb|EWM24739.1|0.000e+0100.00hypothetical protein Naga_100272g7 [Nannochloropsi... [more]
gi|553180700|ref|XP_005853448.1|3.190e-8586.93hypothetical protein NGA_0179402 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5953rna5953Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications