EWM24772.1, cds5902 (CDS) Nannochloropsis gaditana

Overview
NameEWM24772.1
Unique Namecds5902
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:87845..88219 -
Alignment locationCM002467.1:87146..87312 -
Alignment locationCM002467.1:86178..86992 -
Alignment locationCM002467.1:85613..86010 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24772.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100255g3.4991.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:87845..88219 -
CM002467.1supercontigCM002467.1:87146..87312 -
CM002467.1supercontigCM002467.1:86178..86992 -
CM002467.1supercontigCM002467.1:85613..86010 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003676nucleic acid binding
GO:0000213tRNA-intron endonuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0006388tRNA splicing, via endonucleolytic cleavage and ligation
Vocabulary: INTERPRO
TermDefinition
IPR011856tRNA_endonuc-like_dom
IPR006677tRNA_intron_Endonuc_cat-like
Homology
BLAST of EWM24772.1 vs. NCBI_GenBank
Match: gi|585106337|gb|EWM24772.1| (hypothetical protein Naga_100255g3 [Nannochloropsis gaditana])

HSP 1 Score: 1172.53 bits (3032), Expect = 0.000e+0
Identity = 584/584 (100.00%), Postives = 584/584 (100.00%), Query Frame = 0
Query:    1 MDDNTEEVINDSTVEIKLPTAQSEKIGANEPVEQLQRPTWTEKGKNDFVQRLPEEALSCSTHSTPLQQGNPTKINDEILSADPGNDPSLKKRERCEEMEDKDDLIPKKRPKEFKTWFPSSAHISTAVPVAVMPSALSLMVDEGILRMGEEAPRADTDYFDKRVVDAAAVRAIEEEREENKRRRLEVARQRAAEEQRALAAAMGASPSLPPSLLPSLPPSSRRFTGEARGGEREAGGKGNEEGCQGVEENAGEEGGESGDRSDEEGEERGGREKGEGLMGRSGGEKGREQGEGAAEEEGQGGGKESSGKEEMVVEEASTAAPPAVENGAHADLTRTPPASSSLPPSLPPSFLSDSSSSSHPSSLNGPGTARLPPPSAFAHLEQVASQHLLPPRPLSNPPSIPPSLPLVRGLADMSGYHSLEERMLRAVYRDLWERGLTIGSGGAYGADFTAYEGDPMAFHSFAAIIVLPASSPLSARALSASVRLEQSVVKLLVYAVCHRREGEEEHMEGRGEKRTGEGGENGGEEREKDVRMETSTFAEGKGKEGDVGTRAAITRFGWPRRSYVGGFMIEYMTLRFISVTRRME 584
            MDDNTEEVINDSTVEIKLPTAQSEKIGANEPVEQLQRPTWTEKGKNDFVQRLPEEALSCSTHSTPLQQGNPTKINDEILSADPGNDPSLKKRERCEEMEDKDDLIPKKRPKEFKTWFPSSAHISTAVPVAVMPSALSLMVDEGILRMGEEAPRADTDYFDKRVVDAAAVRAIEEEREENKRRRLEVARQRAAEEQRALAAAMGASPSLPPSLLPSLPPSSRRFTGEARGGEREAGGKGNEEGCQGVEENAGEEGGESGDRSDEEGEERGGREKGEGLMGRSGGEKGREQGEGAAEEEGQGGGKESSGKEEMVVEEASTAAPPAVENGAHADLTRTPPASSSLPPSLPPSFLSDSSSSSHPSSLNGPGTARLPPPSAFAHLEQVASQHLLPPRPLSNPPSIPPSLPLVRGLADMSGYHSLEERMLRAVYRDLWERGLTIGSGGAYGADFTAYEGDPMAFHSFAAIIVLPASSPLSARALSASVRLEQSVVKLLVYAVCHRREGEEEHMEGRGEKRTGEGGENGGEEREKDVRMETSTFAEGKGKEGDVGTRAAITRFGWPRRSYVGGFMIEYMTLRFISVTRRME
Sbjct:    1 MDDNTEEVINDSTVEIKLPTAQSEKIGANEPVEQLQRPTWTEKGKNDFVQRLPEEALSCSTHSTPLQQGNPTKINDEILSADPGNDPSLKKRERCEEMEDKDDLIPKKRPKEFKTWFPSSAHISTAVPVAVMPSALSLMVDEGILRMGEEAPRADTDYFDKRVVDAAAVRAIEEEREENKRRRLEVARQRAAEEQRALAAAMGASPSLPPSLLPSLPPSSRRFTGEARGGEREAGGKGNEEGCQGVEENAGEEGGESGDRSDEEGEERGGREKGEGLMGRSGGEKGREQGEGAAEEEGQGGGKESSGKEEMVVEEASTAAPPAVENGAHADLTRTPPASSSLPPSLPPSFLSDSSSSSHPSSLNGPGTARLPPPSAFAHLEQVASQHLLPPRPLSNPPSIPPSLPLVRGLADMSGYHSLEERMLRAVYRDLWERGLTIGSGGAYGADFTAYEGDPMAFHSFAAIIVLPASSPLSARALSASVRLEQSVVKLLVYAVCHRREGEEEHMEGRGEKRTGEGGENGGEEREKDVRMETSTFAEGKGKEGDVGTRAAITRFGWPRRSYVGGFMIEYMTLRFISVTRRME 584          
BLAST of EWM24772.1 vs. NCBI_GenBank
Match: gi|553184517|ref|XP_005854102.1| (trna splicing endonuclease 34-like protein [Nannochloropsis gaditana CCMP526] >gi|422294959|gb|EKU22258.1| trna splicing endonuclease 34-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 355.525 bits (911), Expect = 7.798e-118
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0
Query:  413 MSGYHSLEERMLRAVYRDLWERGLTIGSGGAYGADFTAYEGDPMAFHSFAAIIVLPASSPLSARALSASVRLEQSVVKLLVYAVCHRREGEEEHMEGRGEKRTGEGGENGGEEREKDVRMETSTFAEGKGKEGDVGTRAAITRFGWPRRSYVGGFMIEYMTLRFISVTRRME 584
            MSGYHSLEERMLRAVYRDLWERGLTIGSGGAYGADFTAYEGDPMAFHSFAAIIVLPASSPLSARALSASVRLEQSVVKLLVYAVCHRREGEEEHMEGRGEKRTGEGGENGGEEREKDVRMETSTFAEGKGKEGDVGTRAAITRFGWPRRSYVGGFMIEYMTLRFISVTRRME
Sbjct:    1 MSGYHSLEERMLRAVYRDLWERGLTIGSGGAYGADFTAYEGDPMAFHSFAAIIVLPASSPLSARALSASVRLEQSVVKLLVYAVCHRREGEEEHMEGRGEKRTGEGGENGGEEREKDVRMETSTFAEGKGKEGDVGTRAAITRFGWPRRSYVGGFMIEYMTLRFISVTRRME 172          
BLAST of EWM24772.1 vs. NCBI_GenBank
Match: gi|553184514|ref|XP_005854101.1| (hypothetical protein NGA_0469900 [Nannochloropsis gaditana CCMP526] >gi|422294958|gb|EKU22257.1| hypothetical protein NGA_0469900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 254.988 bits (650), Expect = 5.089e-77
Identity = 123/131 (93.89%), Postives = 126/131 (96.18%), Query Frame = 0
Query:    1 MDDNTEEVINDSTVEIKLPTAQSEKIGANEPVEQLQRPTWTEKGKNDFVQRLPEEALSCSTHSTPLQQGNPTKINDEILSADPGNDPSLKKRERCEEMEDKDDLIPKKRPKEFKTWFPSSAHISTAVPVAV 131
            MDDNTEEVINDSTVEIKLPTAQSEKIGANEPVEQLQRPT TEKGKNDFVQRLPEEALSCSTHSTPLQQG  TKINDEILSADPGNDP+LKKRERCEEMEDKDDLIPKKRPKEFKTWFPSSAHIST VP+ +
Sbjct:    1 MDDNTEEVINDSTVEIKLPTAQSEKIGANEPVEQLQRPTRTEKGKNDFVQRLPEEALSCSTHSTPLQQGKTTKINDEILSADPGNDPNLKKRERCEEMEDKDDLIPKKRPKEFKTWFPSSAHIST-VPLLM 130          

HSP 2 Score: 111.694 bits (278), Expect = 9.308e-24
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0
Query:  123 ISTAVPVAVMPSALSLMVDEGILRMGEEAPRADTDYFDKRVVDAAAVRAIEEEREENKR 181
            +  AVPVAVMPSALSLMVDEGIL MGEEAPRADTDYFDKRVVDAAAVRAIEEEREENKR
Sbjct:  226 VQRAVPVAVMPSALSLMVDEGILSMGEEAPRADTDYFDKRVVDAAAVRAIEEEREENKR 284          
BLAST of EWM24772.1 vs. NCBI_GenBank
Match: gi|156357327|ref|XP_001624172.1| (predicted protein [Nematostella vectensis] >gi|156210931|gb|EDO32072.1| predicted protein, partial [Nematostella vectensis])

HSP 1 Score: 66.6254 bits (161), Expect = 5.633e-10
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 0
Query:  416 YHSLEERMLR-AVYRDLWERGLTIGSGGAYGADFTAYEGDPMAFHSFAAIIVLPASSPLSARALSASVRLEQSVVKLLVYA 495
            Y + E   LR +++++LWERGL I SG  +G DF AY GDP+ FHSF  ++V+P         + +  RL  +V K  V+A
Sbjct:    3 YPNTENEHLRYSIFKNLWERGLYITSGCKFGGDFLAYPGDPVKFHSFYIVVVVPYDKRTGMLDVVSMGRLGATVKKTAVFA 83          
BLAST of EWM24772.1 vs. NCBI_GenBank
Match: gi|1032914194|ref|XP_016834814.1| (PREDICTED: tRNA-splicing endonuclease subunit Sen34 isoform X1, partial [Cricetulus griseus])

HSP 1 Score: 62.3882 bits (150), Expect = 3.026e-7
Identity = 27/68 (39.71%), Postives = 39/68 (57.35%), Query Frame = 0
Query:  426 AVYRDLWERGLTIGSGGAYGADFTAYEGDPMAFHSFAAIIVLPASSPLSARALSASVRLEQSVVKLLV 493
            ++YRDLWERG  + + G +G DF  Y GDP+ FH+        A  P+  + L ++ RL  SV K L+
Sbjct:  155 SIYRDLWERGFFLSAAGKFGGDFLVYPGDPLRFHAHYIAQCWAADDPIPLQDLVSAGRLGTSVRKTLL 222          
BLAST of EWM24772.1 vs. NCBI_GenBank
Match: gi|1032961015|ref|XP_016828402.1| (PREDICTED: tRNA-splicing endonuclease subunit Sen34 isoform X2 [Cricetulus griseus])

HSP 1 Score: 62.003 bits (149), Expect = 4.796e-7
Identity = 27/68 (39.71%), Postives = 39/68 (57.35%), Query Frame = 0
Query:  426 AVYRDLWERGLTIGSGGAYGADFTAYEGDPMAFHSFAAIIVLPASSPLSARALSASVRLEQSVVKLLV 493
            ++YRDLWERG  + + G +G DF  Y GDP+ FH+        A  P+  + L ++ RL  SV K L+
Sbjct:  169 SIYRDLWERGFFLSAAGKFGGDFLVYPGDPLRFHAHYIAQCWAADDPIPLQDLVSAGRLGTSVRKTLL 236          
The following BLAST results are available for this feature:
BLAST of EWM24772.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585106337|gb|EWM24772.1|0.000e+0100.00hypothetical protein Naga_100255g3 [Nannochloropsi... [more]
gi|553184517|ref|XP_005854102.1|7.798e-118100.00trna splicing endonuclease 34-like protein [Nannoc... [more]
gi|553184514|ref|XP_005854101.1|5.089e-7793.89hypothetical protein NGA_0469900 [Nannochloropsis ... [more]
gi|156357327|ref|XP_001624172.1|5.633e-1040.74predicted protein [Nematostella vectensis] >gi|156... [more]
gi|1032914194|ref|XP_016834814.1|3.026e-739.71PREDICTED: tRNA-splicing endonuclease subunit Sen3... [more]
gi|1032961015|ref|XP_016828402.1|4.796e-739.71PREDICTED: tRNA-splicing endonuclease subunit Sen3... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5917rna5917Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications