EWM24772.1, cds5902 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24772.1 vs. NCBI_GenBank
Match: gi|585106337|gb|EWM24772.1| (hypothetical protein Naga_100255g3 [Nannochloropsis gaditana]) HSP 1 Score: 1172.53 bits (3032), Expect = 0.000e+0 Identity = 584/584 (100.00%), Postives = 584/584 (100.00%), Query Frame = 0
Query: 1 MDDNTEEVINDSTVEIKLPTAQSEKIGANEPVEQLQRPTWTEKGKNDFVQRLPEEALSCSTHSTPLQQGNPTKINDEILSADPGNDPSLKKRERCEEMEDKDDLIPKKRPKEFKTWFPSSAHISTAVPVAVMPSALSLMVDEGILRMGEEAPRADTDYFDKRVVDAAAVRAIEEEREENKRRRLEVARQRAAEEQRALAAAMGASPSLPPSLLPSLPPSSRRFTGEARGGEREAGGKGNEEGCQGVEENAGEEGGESGDRSDEEGEERGGREKGEGLMGRSGGEKGREQGEGAAEEEGQGGGKESSGKEEMVVEEASTAAPPAVENGAHADLTRTPPASSSLPPSLPPSFLSDSSSSSHPSSLNGPGTARLPPPSAFAHLEQVASQHLLPPRPLSNPPSIPPSLPLVRGLADMSGYHSLEERMLRAVYRDLWERGLTIGSGGAYGADFTAYEGDPMAFHSFAAIIVLPASSPLSARALSASVRLEQSVVKLLVYAVCHRREGEEEHMEGRGEKRTGEGGENGGEEREKDVRMETSTFAEGKGKEGDVGTRAAITRFGWPRRSYVGGFMIEYMTLRFISVTRRME 584
MDDNTEEVINDSTVEIKLPTAQSEKIGANEPVEQLQRPTWTEKGKNDFVQRLPEEALSCSTHSTPLQQGNPTKINDEILSADPGNDPSLKKRERCEEMEDKDDLIPKKRPKEFKTWFPSSAHISTAVPVAVMPSALSLMVDEGILRMGEEAPRADTDYFDKRVVDAAAVRAIEEEREENKRRRLEVARQRAAEEQRALAAAMGASPSLPPSLLPSLPPSSRRFTGEARGGEREAGGKGNEEGCQGVEENAGEEGGESGDRSDEEGEERGGREKGEGLMGRSGGEKGREQGEGAAEEEGQGGGKESSGKEEMVVEEASTAAPPAVENGAHADLTRTPPASSSLPPSLPPSFLSDSSSSSHPSSLNGPGTARLPPPSAFAHLEQVASQHLLPPRPLSNPPSIPPSLPLVRGLADMSGYHSLEERMLRAVYRDLWERGLTIGSGGAYGADFTAYEGDPMAFHSFAAIIVLPASSPLSARALSASVRLEQSVVKLLVYAVCHRREGEEEHMEGRGEKRTGEGGENGGEEREKDVRMETSTFAEGKGKEGDVGTRAAITRFGWPRRSYVGGFMIEYMTLRFISVTRRME
Sbjct: 1 MDDNTEEVINDSTVEIKLPTAQSEKIGANEPVEQLQRPTWTEKGKNDFVQRLPEEALSCSTHSTPLQQGNPTKINDEILSADPGNDPSLKKRERCEEMEDKDDLIPKKRPKEFKTWFPSSAHISTAVPVAVMPSALSLMVDEGILRMGEEAPRADTDYFDKRVVDAAAVRAIEEEREENKRRRLEVARQRAAEEQRALAAAMGASPSLPPSLLPSLPPSSRRFTGEARGGEREAGGKGNEEGCQGVEENAGEEGGESGDRSDEEGEERGGREKGEGLMGRSGGEKGREQGEGAAEEEGQGGGKESSGKEEMVVEEASTAAPPAVENGAHADLTRTPPASSSLPPSLPPSFLSDSSSSSHPSSLNGPGTARLPPPSAFAHLEQVASQHLLPPRPLSNPPSIPPSLPLVRGLADMSGYHSLEERMLRAVYRDLWERGLTIGSGGAYGADFTAYEGDPMAFHSFAAIIVLPASSPLSARALSASVRLEQSVVKLLVYAVCHRREGEEEHMEGRGEKRTGEGGENGGEEREKDVRMETSTFAEGKGKEGDVGTRAAITRFGWPRRSYVGGFMIEYMTLRFISVTRRME 584
BLAST of EWM24772.1 vs. NCBI_GenBank
Match: gi|553184517|ref|XP_005854102.1| (trna splicing endonuclease 34-like protein [Nannochloropsis gaditana CCMP526] >gi|422294959|gb|EKU22258.1| trna splicing endonuclease 34-like protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 355.525 bits (911), Expect = 7.798e-118 Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0
Query: 413 MSGYHSLEERMLRAVYRDLWERGLTIGSGGAYGADFTAYEGDPMAFHSFAAIIVLPASSPLSARALSASVRLEQSVVKLLVYAVCHRREGEEEHMEGRGEKRTGEGGENGGEEREKDVRMETSTFAEGKGKEGDVGTRAAITRFGWPRRSYVGGFMIEYMTLRFISVTRRME 584
MSGYHSLEERMLRAVYRDLWERGLTIGSGGAYGADFTAYEGDPMAFHSFAAIIVLPASSPLSARALSASVRLEQSVVKLLVYAVCHRREGEEEHMEGRGEKRTGEGGENGGEEREKDVRMETSTFAEGKGKEGDVGTRAAITRFGWPRRSYVGGFMIEYMTLRFISVTRRME
Sbjct: 1 MSGYHSLEERMLRAVYRDLWERGLTIGSGGAYGADFTAYEGDPMAFHSFAAIIVLPASSPLSARALSASVRLEQSVVKLLVYAVCHRREGEEEHMEGRGEKRTGEGGENGGEEREKDVRMETSTFAEGKGKEGDVGTRAAITRFGWPRRSYVGGFMIEYMTLRFISVTRRME 172
BLAST of EWM24772.1 vs. NCBI_GenBank
Match: gi|553184514|ref|XP_005854101.1| (hypothetical protein NGA_0469900 [Nannochloropsis gaditana CCMP526] >gi|422294958|gb|EKU22257.1| hypothetical protein NGA_0469900 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 254.988 bits (650), Expect = 5.089e-77 Identity = 123/131 (93.89%), Postives = 126/131 (96.18%), Query Frame = 0
Query: 1 MDDNTEEVINDSTVEIKLPTAQSEKIGANEPVEQLQRPTWTEKGKNDFVQRLPEEALSCSTHSTPLQQGNPTKINDEILSADPGNDPSLKKRERCEEMEDKDDLIPKKRPKEFKTWFPSSAHISTAVPVAV 131
MDDNTEEVINDSTVEIKLPTAQSEKIGANEPVEQLQRPT TEKGKNDFVQRLPEEALSCSTHSTPLQQG TKINDEILSADPGNDP+LKKRERCEEMEDKDDLIPKKRPKEFKTWFPSSAHIST VP+ +
Sbjct: 1 MDDNTEEVINDSTVEIKLPTAQSEKIGANEPVEQLQRPTRTEKGKNDFVQRLPEEALSCSTHSTPLQQGKTTKINDEILSADPGNDPNLKKRERCEEMEDKDDLIPKKRPKEFKTWFPSSAHIST-VPLLM 130 HSP 2 Score: 111.694 bits (278), Expect = 9.308e-24 Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0
Query: 123 ISTAVPVAVMPSALSLMVDEGILRMGEEAPRADTDYFDKRVVDAAAVRAIEEEREENKR 181
+ AVPVAVMPSALSLMVDEGIL MGEEAPRADTDYFDKRVVDAAAVRAIEEEREENKR
Sbjct: 226 VQRAVPVAVMPSALSLMVDEGILSMGEEAPRADTDYFDKRVVDAAAVRAIEEEREENKR 284
BLAST of EWM24772.1 vs. NCBI_GenBank
Match: gi|156357327|ref|XP_001624172.1| (predicted protein [Nematostella vectensis] >gi|156210931|gb|EDO32072.1| predicted protein, partial [Nematostella vectensis]) HSP 1 Score: 66.6254 bits (161), Expect = 5.633e-10 Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 0
Query: 416 YHSLEERMLR-AVYRDLWERGLTIGSGGAYGADFTAYEGDPMAFHSFAAIIVLPASSPLSARALSASVRLEQSVVKLLVYA 495
Y + E LR +++++LWERGL I SG +G DF AY GDP+ FHSF ++V+P + + RL +V K V+A
Sbjct: 3 YPNTENEHLRYSIFKNLWERGLYITSGCKFGGDFLAYPGDPVKFHSFYIVVVVPYDKRTGMLDVVSMGRLGATVKKTAVFA 83
BLAST of EWM24772.1 vs. NCBI_GenBank
Match: gi|1032914194|ref|XP_016834814.1| (PREDICTED: tRNA-splicing endonuclease subunit Sen34 isoform X1, partial [Cricetulus griseus]) HSP 1 Score: 62.3882 bits (150), Expect = 3.026e-7 Identity = 27/68 (39.71%), Postives = 39/68 (57.35%), Query Frame = 0
Query: 426 AVYRDLWERGLTIGSGGAYGADFTAYEGDPMAFHSFAAIIVLPASSPLSARALSASVRLEQSVVKLLV 493
++YRDLWERG + + G +G DF Y GDP+ FH+ A P+ + L ++ RL SV K L+
Sbjct: 155 SIYRDLWERGFFLSAAGKFGGDFLVYPGDPLRFHAHYIAQCWAADDPIPLQDLVSAGRLGTSVRKTLL 222
BLAST of EWM24772.1 vs. NCBI_GenBank
Match: gi|1032961015|ref|XP_016828402.1| (PREDICTED: tRNA-splicing endonuclease subunit Sen34 isoform X2 [Cricetulus griseus]) HSP 1 Score: 62.003 bits (149), Expect = 4.796e-7 Identity = 27/68 (39.71%), Postives = 39/68 (57.35%), Query Frame = 0
Query: 426 AVYRDLWERGLTIGSGGAYGADFTAYEGDPMAFHSFAAIIVLPASSPLSARALSASVRLEQSVVKLLV 493
++YRDLWERG + + G +G DF Y GDP+ FH+ A P+ + L ++ RL SV K L+
Sbjct: 169 SIYRDLWERGFFLSAAGKFGGDFLVYPGDPLRFHAHYIAQCWAADDPIPLQDLVSAGRLGTSVRKTLL 236 The following BLAST results are available for this feature:
BLAST of EWM24772.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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