EWM24769.1, cds5901 (CDS) Nannochloropsis gaditana

Overview
NameEWM24769.1
Unique Namecds5901
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:84569..84730 -
Alignment locationCM002467.1:84302..84358 -
Alignment locationCM002467.1:84083..84214 -
Alignment locationCM002467.1:83696..83781 -
Alignment locationCM002467.1:83412..83514 -
Alignment locationCM002467.1:82571..83203 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24769.1
Productubiquitin-conjugating enzyme e2 j1
Orig transcript idgnl|cribi|Naga_100255g2.4988.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:84569..84730 -
CM002467.1supercontigCM002467.1:84302..84358 -
CM002467.1supercontigCM002467.1:84083..84214 -
CM002467.1supercontigCM002467.1:83696..83781 -
CM002467.1supercontigCM002467.1:83412..83514 -
CM002467.1supercontigCM002467.1:82571..83203 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR000608UBQ-conjugat_E2
IPR016135UBQ-conjugating_enzyme/RWD
Homology
BLAST of EWM24769.1 vs. NCBI_GenBank
Match: gi|585106334|gb|EWM24769.1| (ubiquitin-conjugating enzyme e2 j1 [Nannochloropsis gaditana])

HSP 1 Score: 798.119 bits (2060), Expect = 0.000e+0
Identity = 390/390 (100.00%), Postives = 390/390 (100.00%), Query Frame = 0
Query:    1 MDSHISYLRCMNRILSVLPSPAQRGKHLDSKEVAMDEHPRKGNVKNPAIRRIHADIRELQKDPSDQYHAAPLEENLFEWHFTLRGPPATDYDGGVYHGRILLPAEYPFKPPNIMLLTPSGRFEIGKKICLSISAHHPEHWQPAWGGLILEALISFFPTEPKGAVGSLDWTPEERKRLAVESQSWCCARCGLIKTLLPPLNTVFGEESGKEGEEGEEEGADGAENNGGKRTYAEAVSQLYVRAASESAASQEEALGEDKEDGGQKDGGVKPYPTLKHESGGSSASPSVPTPAEPNLRQQAAAPTSITSSSLARQRSAGTRSSSINSAAVAFVEENEGEEEKEDKLFYLAVFLFLLLILLVGRKLARAWIRQRGVYLEEGISASGWEDGIDL 390
            MDSHISYLRCMNRILSVLPSPAQRGKHLDSKEVAMDEHPRKGNVKNPAIRRIHADIRELQKDPSDQYHAAPLEENLFEWHFTLRGPPATDYDGGVYHGRILLPAEYPFKPPNIMLLTPSGRFEIGKKICLSISAHHPEHWQPAWGGLILEALISFFPTEPKGAVGSLDWTPEERKRLAVESQSWCCARCGLIKTLLPPLNTVFGEESGKEGEEGEEEGADGAENNGGKRTYAEAVSQLYVRAASESAASQEEALGEDKEDGGQKDGGVKPYPTLKHESGGSSASPSVPTPAEPNLRQQAAAPTSITSSSLARQRSAGTRSSSINSAAVAFVEENEGEEEKEDKLFYLAVFLFLLLILLVGRKLARAWIRQRGVYLEEGISASGWEDGIDL
Sbjct:    1 MDSHISYLRCMNRILSVLPSPAQRGKHLDSKEVAMDEHPRKGNVKNPAIRRIHADIRELQKDPSDQYHAAPLEENLFEWHFTLRGPPATDYDGGVYHGRILLPAEYPFKPPNIMLLTPSGRFEIGKKICLSISAHHPEHWQPAWGGLILEALISFFPTEPKGAVGSLDWTPEERKRLAVESQSWCCARCGLIKTLLPPLNTVFGEESGKEGEEGEEEGADGAENNGGKRTYAEAVSQLYVRAASESAASQEEALGEDKEDGGQKDGGVKPYPTLKHESGGSSASPSVPTPAEPNLRQQAAAPTSITSSSLARQRSAGTRSSSINSAAVAFVEENEGEEEKEDKLFYLAVFLFLLLILLVGRKLARAWIRQRGVYLEEGISASGWEDGIDL 390          
BLAST of EWM24769.1 vs. NCBI_GenBank
Match: gi|298710056|emb|CBJ31773.1| (ubiquitin-conjugating enzyme E2, putative [Ectocarpus siliculosus])

HSP 1 Score: 265.003 bits (676), Expect = 1.523e-82
Identity = 127/210 (60.48%), Postives = 155/210 (73.81%), Query Frame = 0
Query:   43 NVKNPAIRRIHADIRELQKDPSDQYHAAPLEENLFEWHFTLRGPPATDYDGGVYHGRILLPAEYPFKPPNIMLLTPSGRFEIGKKICLSISAHHPEHWQPAWG-GLILEALISFFPTEPKGAVGSLDWTPEERKRLAVESQSWCCARCGLIKTLLPPLNTVFGEESGKEGEEGEEEGADGAENNGGKRTYAEAVSQLY---VRAASESAA 248
            N+KNPAI+RIHAD+REL KDPSDQYHAAPLE NLFEWHFT+RGPP T+++GGVYHGRI+LP EYPF+PP+IM  TP+GRF  G KICL+IS++HPEHWQPAWG  LILEALISFFP+   GA+G LDW+  ERKRLAVES+ W C +CGL+  LLP L             +GE  GA       G+ +YA+ + +L+    + A E AA
Sbjct:    4 NIKNPAIKRIHADVRELMKDPSDQYHAAPLESNLFEWHFTIRGPPDTEFEGGVYHGRIILPPEYPFRPPDIMFNTPNGRFSTGMKICLTISSYHPEHWQPAWGIRLILEALISFFPSPSHGALGGLDWSAGERKRLAVESRKWKCYKCGLVADLLPELRP-----------KGESGGAS------GRSSYADQIKELHKLKAKTADEVAA 196          
BLAST of EWM24769.1 vs. NCBI_GenBank
Match: gi|635367482|emb|CCI10035.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 252.677 bits (644), Expect = 1.749e-78
Identity = 123/216 (56.94%), Postives = 156/216 (72.22%), Query Frame = 0
Query:   42 GNVKNPAIRRIHADIRELQKDPSDQYHAAPLEENLFEWHFTLRGPPATDYDGGVYHGRILLPAEYPFKPPNIMLLTPSGRFEIGKKICLSISAHHPEHWQPAWG-GLILEALISFFPTEPKGAVGSLDWTPEERKRLAVESQSWCCARCGLIKTLLPPLNTVFGEESGKEGEEGEEEG---ADGAENNGGKRTYAEAVSQLYVRAASESAASQEEA 253
             +V+N AI+RI  D+RE+  +PSDQY AAPLE+N+F+WHFTLRG   T+++GG+YHGRILLPA+YPFKPPNI+LLTP+GRFE+ KKICLSISAHHPE WQPAWG  LILEALISF PT+ +GA+G+L++T EER+RLA++S+ +CC  CG I  LLP L+        KE E  E+         E    K+T AE        A SES+  QEE+
Sbjct:   20 ASVRNTAIKRIQGDVREMMTNPSDQYTAAPLEDNMFDWHFTLRGTRDTEFEGGIYHGRILLPADYPFKPPNIILLTPNGRFEVRKKICLSISAHHPEEWQPAWGVRLILEALISFMPTQGEGAIGALNFTVEERRRLAIKSREFCCDVCGNIAQLLPELSEGSITNEKKESEYAEQIAKLHVHTVEKEAEKQTTAE-------NARSESSVPQEES 228          
BLAST of EWM24769.1 vs. NCBI_GenBank
Match: gi|673042241|ref|XP_008875081.1| (hypothetical protein H310_10459 [Aphanomyces invadans] >gi|574469274|gb|ETV96289.1| hypothetical protein H310_10459 [Aphanomyces invadans])

HSP 1 Score: 250.366 bits (638), Expect = 2.885e-77
Identity = 138/283 (48.76%), Postives = 177/283 (62.54%), Query Frame = 0
Query:   43 NVKNPAIRRIHADIRELQKDPSDQYHAAPLEENLFEWHFTLRGPPATDYDGGVYHGRILLPAEYPFKPPNIMLLTPSGRFEIGKKICLSISAHHPEHWQPAWG-GLILEALISFFPTEPKGAVGSLDWTPEERKRLAVESQSWCCARCGLIKTLLPPLNTVFGEESGKEGEEGEEEGADGAENNGGKRTYAEAVSQLYVR-----AASESAASQEEALGEDKEDGGQKDGGVKPYPTLKHESGGSSASPSVPTPAEPNLRQQAAAPTSITSSSLARQRSAGTR 319
            ++ N AI+RI AD+RE+  DPSDQY AAPLE+N+F+WHFT+RGP  T++ GGVYHGRILLP++YPFKPPNI+LLTP+GRFE+ KKICLSISA+HPEHWQPAWG  LILEALISF PT+ +GA+G+LD+TPEERK LA+ES  W C +CG I  L+P              EE E E A  ++       YA  ++QL++      + S++  S E A   D          + P P    ++    A    P+P    LR    AP   T S   R  SA +R
Sbjct:    4 SIGNTAIKRIRADVREMMTDPSDQYSAAPLEDNMFDWHFTIRGPRDTEFAGGVYHGRILLPSDYPFKPPNIILLTPNGRFEVKKKICLSISAYHPEHWQPAWGVRLILEALISFMPTKGEGAIGALDFTPEERKALALESVRWTCPQCGDINALIP--------------EEREREDATESK-------YASQIAQLHIHNMEAPSTSDTTPSDETAEISDTAIPSAA-PEIDPSPAAPSDTNALHAQDLAPSPP---LRDTTRAP---TPSPTRRPASAASR 258          
BLAST of EWM24769.1 vs. NCBI_GenBank
Match: gi|1173941628|gb|OQR90751.1| (ubiquitin-conjugating enzyme E2 [Achlya hypogyna])

HSP 1 Score: 246.899 bits (629), Expect = 2.949e-76
Identity = 108/156 (69.23%), Postives = 135/156 (86.54%), Query Frame = 0
Query:   43 NVKNPAIRRIHADIRELQKDPSDQYHAAPLEENLFEWHFTLRGPPATDYDGGVYHGRILLPAEYPFKPPNIMLLTPSGRFEIGKKICLSISAHHPEHWQPAWG-GLILEALISFFPTEPKGAVGSLDWTPEERKRLAVESQSWCCARCGLIKTLLP 197
            ++ N AI+RI AD+RE+  DPSDQY+AAPLE N+F+WHFT+RGP  T+++GG++HGRILLP+EYPFKPPNI+LLTP+GRFE+ KKICLSISA+HPEHWQPAWG  LILEALISF PT+ +GA+G+LD+T EERK+LA ES  W C +CG IK L+P
Sbjct:    4 SIGNTAIKRIRADVREMMTDPSDQYYAAPLESNMFDWHFTIRGPRDTEFEGGIFHGRILLPSEYPFKPPNIILLTPNGRFEVKKKICLSISAYHPEHWQPAWGVRLILEALISFMPTKGEGAIGALDFTAEERKKLAKESVVWSCPQCGSIKDLIP 159          
BLAST of EWM24769.1 vs. NCBI_GenBank
Match: gi|1173956049|gb|OQS02930.1| (ubiquitin-conjugating enzyme E2 [Thraustotheca clavata])

HSP 1 Score: 246.128 bits (627), Expect = 1.018e-75
Identity = 108/157 (68.79%), Postives = 135/157 (85.99%), Query Frame = 0
Query:   42 GNVKNPAIRRIHADIRELQKDPSDQYHAAPLEENLFEWHFTLRGPPATDYDGGVYHGRILLPAEYPFKPPNIMLLTPSGRFEIGKKICLSISAHHPEHWQPAWG-GLILEALISFFPTEPKGAVGSLDWTPEERKRLAVESQSWCCARCGLIKTLLP 197
             ++ N AI+RI AD+RE+  DPSDQY+AAPLE N+F+WHFT+RGP  T+++GG++HGRILLP+EYPFKPPNI+LLTP+GRFE+ KKICLSISA+HPEHWQPAWG  LILEALISF PT+ +GA+G+LD+T EERK+LA ES  W C +CG IK L+P
Sbjct:    3 ASIGNTAIKRIRADVREMMTDPSDQYYAAPLENNMFDWHFTIRGPRDTEFEGGIFHGRILLPSEYPFKPPNIILLTPNGRFEVKKKICLSISAYHPEHWQPAWGVRLILEALISFMPTKGEGAIGALDFTAEERKKLAQESVHWTCPQCGEIKGLIP 159          
BLAST of EWM24769.1 vs. NCBI_GenBank
Match: gi|325188206|emb|CCA22747.1| (ubiquitinconjugating enzyme E2 putative [Albugo laibachii Nc14])

HSP 1 Score: 244.973 bits (624), Expect = 1.753e-75
Identity = 113/207 (54.59%), Postives = 153/207 (73.91%), Query Frame = 0
Query:   42 GNVKNPAIRRIHADIRELQKDPSDQYHAAPLEENLFEWHFTLRGPPATDYDGGVYHGRILLPAEYPFKPPNIMLLTPSGRFEIGKKICLSISAHHPEHWQPAWG-GLILEALISFFPTEPKGAVGSLDWTPEERKRLAVESQSWCCARCGLIKTLLPPLNTVFGEESGKEGEEGEEEGADGAENNGGKRTYAEAVSQLYVRAASESA 247
             +V+N AI+RI  D+RE+  +PSDQY A PLE+N+F+WHFTLRG   T+++GGVYHGRILLPA+YPF+PPNI+LLTP+GRFE+ KKICLSISAHHPE WQPAWG  LILEALISF PT+ +GA+G+L+++ EER+RLA++S+ +CC  CG +  LLP L+     +  K+GE+   E             +AE +++L+V    + A
Sbjct:   20 ASVRNTAIKRIQGDVREMMTNPSDQYTAVPLEDNMFDWHFTLRGTRDTEFEGGVYHGRILLPADYPFRPPNIILLTPNGRFEVKKKICLSISAHHPEEWQPAWGVRLILEALISFMPTQGEGAIGALNFSVEERRRLAIKSREFCCDTCGNVAQLLPELS-----DDSKKGEKKVSE-------------FAEQIAKLHVHTVEKEA 208          
BLAST of EWM24769.1 vs. NCBI_GenBank
Match: gi|698791054|ref|XP_009828559.1| (hypothetical protein H257_05392 [Aphanomyces astaci] >gi|574116338|gb|ETV81822.1| hypothetical protein H257_05392 [Aphanomyces astaci])

HSP 1 Score: 243.047 bits (619), Expect = 1.504e-74
Identity = 108/157 (68.79%), Postives = 134/157 (85.35%), Query Frame = 0
Query:   42 GNVKNPAIRRIHADIRELQKDPSDQYHAAPLEENLFEWHFTLRGPPATDYDGGVYHGRILLPAEYPFKPPNIMLLTPSGRFEIGKKICLSISAHHPEHWQPAWG-GLILEALISFFPTEPKGAVGSLDWTPEERKRLAVESQSWCCARCGLIKTLLP 197
             ++ N AI+RI AD+RE+  DPSDQY AAPLE+N+F+WHFT+RGP  T++ GGVYHGRILLP++YPFKPPNI+LLTP+GRFE+ KKICLSISA+HPEHWQPAWG  LILEALISF PT+ +GA+G+LD+TP+ERK LA+ES  W C +CG I  L+P
Sbjct:    4 SSIGNTAIKRIRADVREMMTDPSDQYFAAPLEDNMFDWHFTIRGPRDTEFAGGVYHGRILLPSDYPFKPPNIILLTPNGRFEVKKKICLSISAYHPEHWQPAWGVRLILEALISFMPTKGEGAIGALDFTPDERKALALESVRWTCPQCGDINALIP 160          
BLAST of EWM24769.1 vs. NCBI_GenBank
Match: gi|669151482|ref|XP_008611303.1| (hypothetical protein SDRG_07259 [Saprolegnia diclina VS20] >gi|530736777|gb|EQC35019.1| hypothetical protein SDRG_07259 [Saprolegnia diclina VS20])

HSP 1 Score: 243.047 bits (619), Expect = 1.832e-74
Identity = 107/156 (68.59%), Postives = 132/156 (84.62%), Query Frame = 0
Query:   43 NVKNPAIRRIHADIRELQKDPSDQYHAAPLEENLFEWHFTLRGPPATDYDGGVYHGRILLPAEYPFKPPNIMLLTPSGRFEIGKKICLSISAHHPEHWQPAWG-GLILEALISFFPTEPKGAVGSLDWTPEERKRLAVESQSWCCARCGLIKTLLP 197
            ++ N AI+RI AD+RE+  DPSDQY AAPLE N+F+WHFT+RGP  T ++GG++HGRILLP+EYPFKPPNI+LLTP+GRFE+ KKICLSISA+HPEHWQPAWG  LILEALISF PT+ +GA+G+LD+T +ERK LA ES  W C +CG IK L+P
Sbjct:    4 SIGNTAIKRIRADVREMMTDPSDQYFAAPLENNMFDWHFTIRGPRDTAFEGGIFHGRILLPSEYPFKPPNIILLTPNGRFEVKKKICLSISAYHPEHWQPAWGVRLILEALISFMPTKGEGAIGALDFTADERKTLAAESVHWSCPQCGSIKDLIP 159          
BLAST of EWM24769.1 vs. NCBI_GenBank
Match: gi|695395442|ref|XP_009521163.1| (hypothetical protein PHYSODRAFT_479615 [Phytophthora sojae] >gi|348686060|gb|EGZ25875.1| hypothetical protein PHYSODRAFT_479615 [Phytophthora sojae])

HSP 1 Score: 241.891 bits (616), Expect = 2.066e-74
Identity = 139/326 (42.64%), Postives = 188/326 (57.67%), Query Frame = 0
Query:   42 GNVKNPAIRRIHADIRELQKDPSDQYHAAPLEENLFEWHFTLRGPPATDYDGGVYHGRILLPAEYPFKPPNIMLLTPSGRFEIGKKICLSISAHHPEHWQPAWG-GLILEALISFFPTEPKGAVGSLDWTPEERKRLAVESQSWCCARCGLIKTLLPPLNTVFGEESGKEGEEGEEEGADGAENNGGKRTYAEAVSQLYVRAASESAASQEEALGEDKEDGGQKDGGVKPYPTLKHESGGSSASPSVPTPAEPNLRQQAAAPTSITSSSLARQRSAGTRSSSINSAAVAFVEENEGEEEKEDKLFYLAVFLFLLLILLVGRKLARA 366
             +V+N AI+RI  D+RE+  +PSDQY AAPLE N+F+WHFTLRGP  T+++GG+YHGRI+LP++YPFKPPNIMLLTP+GRFE+ KKICLSISA+HPE WQPAWG  LILEALISF PT+ +GA+G+LD+  EERKRLA  S  + C  CG +  LLP L T  GEE+ K+  +                 YAE ++QL++   S   A    A  + KE                 ++    A+  V  PA  +L++   AP  +      R+      S S+++                  L YL V + + L  L+ +KL +A
Sbjct:    3 ASVRNTAIKRIQGDVREMMTNPSDQYAAAPLETNMFDWHFTLRGPRDTEFEGGIYHGRIILPSDYPFKPPNIMLLTPNGRFEVKKKICLSISAYHPEEWQPAWGVRLILEALISFMPTKGEGAIGALDFPAEERKRLAKLSVDYKCETCGRVADLLPELETEDGEETEKKPSK-----------------YAEQIAQLHMH--SLETAPPASAAKDTKEAA---------------KTEAPPAAEEVEAPAVDDLQEDLDAPFVVDGIPQVRE------SDSVDTF-----------------LHYLTVAIVVALFALIYKKLLQA 271          
The following BLAST results are available for this feature:
BLAST of EWM24769.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106334|gb|EWM24769.1|0.000e+0100.00ubiquitin-conjugating enzyme e2 j1 [Nannochloropsi... [more]
gi|298710056|emb|CBJ31773.1|1.523e-8260.48ubiquitin-conjugating enzyme E2, putative [Ectocar... [more]
gi|635367482|emb|CCI10035.1|1.749e-7856.94unnamed protein product [Albugo candida][more]
gi|673042241|ref|XP_008875081.1|2.885e-7748.76hypothetical protein H310_10459 [Aphanomyces invad... [more]
gi|1173941628|gb|OQR90751.1|2.949e-7669.23ubiquitin-conjugating enzyme E2 [Achlya hypogyna][more]
gi|1173956049|gb|OQS02930.1|1.018e-7568.79ubiquitin-conjugating enzyme E2 [Thraustotheca cla... [more]
gi|325188206|emb|CCA22747.1|1.753e-7554.59ubiquitinconjugating enzyme E2 putative [Albugo la... [more]
gi|698791054|ref|XP_009828559.1|1.504e-7468.79hypothetical protein H257_05392 [Aphanomyces astac... [more]
gi|669151482|ref|XP_008611303.1|1.832e-7468.59hypothetical protein SDRG_07259 [Saprolegnia dicli... [more]
gi|695395442|ref|XP_009521163.1|2.066e-7442.64hypothetical protein PHYSODRAFT_479615 [Phytophtho... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5916rna5916Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications