EWM24770.1, cds5900 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24770.1 vs. NCBI_GenBank
Match: gi|585106335|gb|EWM24770.1| (hypothetical protein Naga_100255g1 [Nannochloropsis gaditana]) HSP 1 Score: 684.1 bits (1764), Expect = 0.000e+0 Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0
Query: 1 MGLTRSPAFIACVAVLVCGMGVDSAESTLDDCKSALSSLPEKPYSTSLPSMAASSGDFPLAYSFQNRIVSVFAAKVFGAFDMCQSPSLYSWNALETHFCTLGGDVAGICMPEACSENVLRSQVNNVEFIAFLAGLKANATLAMSPACVFDPLLTPYCAEEGAGADFFDRLYNSWLIFSKDGVTCGSGFTPMTAGARHMIALIVILALLIMVGTLWGLQYKRALRKVEEESAGAGDEKDKMPDGSPRLPQVGVPPRERRVAQPVAPFFKAFDVRDNLREIFALNTRPGEFSCFDGMRYFSCGWVVLYHVILWQTRFIMNPEVRGRGGGRVGMR 332
MGLTRSPAFIACVAVLVCGMGVDSAESTLDDCKSALSSLPEKPYSTSLPSMAASSGDFPLAYSFQNRIVSVFAAKVFGAFDMCQSPSLYSWNALETHFCTLGGDVAGICMPEACSENVLRSQVNNVEFIAFLAGLKANATLAMSPACVFDPLLTPYCAEEGAGADFFDRLYNSWLIFSKDGVTCGSGFTPMTAGARHMIALIVILALLIMVGTLWGLQYKRALRKVEEESAGAGDEKDKMPDGSPRLPQVGVPPRERRVAQPVAPFFKAFDVRDNLREIFALNTRPGEFSCFDGMRYFSCGWVVLYHVILWQTRFIMNPEVRGRGGGRVGMR
Sbjct: 1 MGLTRSPAFIACVAVLVCGMGVDSAESTLDDCKSALSSLPEKPYSTSLPSMAASSGDFPLAYSFQNRIVSVFAAKVFGAFDMCQSPSLYSWNALETHFCTLGGDVAGICMPEACSENVLRSQVNNVEFIAFLAGLKANATLAMSPACVFDPLLTPYCAEEGAGADFFDRLYNSWLIFSKDGVTCGSGFTPMTAGARHMIALIVILALLIMVGTLWGLQYKRALRKVEEESAGAGDEKDKMPDGSPRLPQVGVPPRERRVAQPVAPFFKAFDVRDNLREIFALNTRPGEFSCFDGMRYFSCGWVVLYHVILWQTRFIMNPEVRGRGGGRVGMR 332
BLAST of EWM24770.1 vs. NCBI_GenBank
Match: gi|553189731|ref|XP_005855059.1| (ring zinc finger-containing protein [Nannochloropsis gaditana CCMP526] >gi|422293995|gb|EKU21295.1| ring zinc finger-containing protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 90.8929 bits (224), Expect = 1.278e-16 Identity = 63/220 (28.64%), Postives = 102/220 (46.36%), Query Frame = 0
Query: 24 SAESTLDDCKSALSSLPEKPYSTSLPSMAASSGDFPLAYSFQNRIVSVFAAKVFGAFDMCQSPSLYSWNALETHFCTLGGDVAGICMPEACSENVLRSQVNNVEFIAFLAGLKANATLAMSPACVFDPLLTPYCAEEGAGADFFDRLYNSWLIFSKD------GVTCGSGFTPMTAGARHMIALIVILALLIMVGTLWGLQYKRALRKVEEESAGAGDEK 237
+A++ + C AL+ L PY+ SLP + SG +AY +Q + +V + G FD+C+ LY+ ++TH+C L D AGIC+P C L +N + + L +A+ + C + LT CA ++F LYN ++ D VTC + A A M+ ++ A L ++G W QY A+ A GD++
Sbjct: 28 TAQAEIQGCIQALARLNTAPYNASLPFLNGVSGHVNVAYLYQKPMFAVMPNEAMGNFDLCRHSELYTSGLVKTHYCALSHDKAGICVPTECRAEDL----HNKAILQPVMNLGIHASTVIPEECAMNLHLTQGCAYSRQALEYFHSLYNLLVLLGNDTPQSTGSVTCTTRAHTAEASAYTMLGFTLLFATLALLGAAW--QYFHAV-------AHHGDKR 234 HSP 2 Score: 73.9442 bits (180), Expect = 5.562e-11 Identity = 38/83 (45.78%), Postives = 46/83 (55.42%), Query Frame = 0
Query: 239 KMPDGSPRLPQV-GVPPRERRVAQPVAPFFKAFDVRDNLREIFALNTRPGEFSCFDGMRYFSCGWVVLYHVILWQTRFIMNPE 320
K PD + QV VPP + ++ AF DNL EIF L R GEF+ FDGM+ S WVV YHV+LWQ + NPE
Sbjct: 344 KQPDMVELMAQVLKVPPCPKPIS--------AFSFVDNLNEIFTLKARGGEFAIFDGMKAISAAWVVFYHVLLWQIYLVQNPE 418
BLAST of EWM24770.1 vs. NCBI_GenBank
Match: gi|585109546|gb|EWM27341.1| (Acyltransferase 3 [Nannochloropsis gaditana]) HSP 1 Score: 90.1225 bits (222), Expect = 3.051e-16 Identity = 60/214 (28.04%), Postives = 100/214 (46.73%), Query Frame = 0
Query: 24 SAESTLDDCKSALSSLPEKPYSTSLPSMAASSGDFPLAYSFQNRIVSVFAAKVFGAFDMCQSPSLYSWNALETHFCTLGGDVAGICMPEACSENVLRSQVNNVEFIAFLAGLKANATLAMSPACVFDPLLTPYCAEEGAGADFFDRLYNSWLIFSKD------GVTCGSGFTPMTAGARHMIALIVILALLIMVGTLWGLQYKRALRKVEEESA 231
+A++ + C AL+ L PY+ SLP + SG +AY +Q + +V + G FD+C+ LY+ ++TH+C L D AGIC+P C ++N + + L +A+ + C + LT CA ++F LYN ++ D VTC + A A M+ ++ A L ++G W QY A+ ++ A
Sbjct: 28 TAQAEIQGCIQALARLNTAPYNASLPFLNGVSGHVNVAYLYQKPMFAVMPNEAMGNFDLCRHSELYTSGLVKTHYCALSHDKAGICVPTECRA----EDLHNKAILQPVMNLGIHASTVIPEECAMNLHLTQGCAYSRQALEYFHSLYNLLVLLGNDTPQSTGSVTCTTRAHTAEASAYTMLGFTLLFATLALLGAAW--QYFHAVAHHGDKRA 235 HSP 2 Score: 73.1738 bits (178), Expect = 1.551e-10 Identity = 38/83 (45.78%), Postives = 46/83 (55.42%), Query Frame = 0
Query: 239 KMPDGSPRLPQV-GVPPRERRVAQPVAPFFKAFDVRDNLREIFALNTRPGEFSCFDGMRYFSCGWVVLYHVILWQTRFIMNPE 320
K PD + QV VPP + ++ AF DNL EIF L R GEF+ FDGM+ S WVV YHV+LWQ + NPE
Sbjct: 344 KQPDMVELMAQVLKVPPCPKPIS--------AFSFVDNLNEIFTLKARGGEFAIFDGMKAISAAWVVFYHVLLWQIYLVQNPE 418 The following BLAST results are available for this feature:
BLAST of EWM24770.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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