EWM24770.1, cds5900 (CDS) Nannochloropsis gaditana

Overview
NameEWM24770.1
Unique Namecds5900
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:81424..81589 -
Alignment locationCM002467.1:80964..81109 -
Alignment locationCM002467.1:80505..80558 -
Alignment locationCM002467.1:80044..80170 -
Alignment locationCM002467.1:79750..79796 -
Alignment locationCM002467.1:79305..79475 -
Alignment locationCM002467.1:78850..78998 -
Alignment locationCM002467.1:78579..78717 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24770.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100255g1.4989.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:81424..81589 -
CM002467.1supercontigCM002467.1:80964..81109 -
CM002467.1supercontigCM002467.1:80505..80558 -
CM002467.1supercontigCM002467.1:80044..80170 -
CM002467.1supercontigCM002467.1:79750..79796 -
CM002467.1supercontigCM002467.1:79305..79475 -
CM002467.1supercontigCM002467.1:78850..78998 -
CM002467.1supercontigCM002467.1:78579..78717 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM24770.1 vs. NCBI_GenBank
Match: gi|585106335|gb|EWM24770.1| (hypothetical protein Naga_100255g1 [Nannochloropsis gaditana])

HSP 1 Score: 684.1 bits (1764), Expect = 0.000e+0
Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0
Query:    1 MGLTRSPAFIACVAVLVCGMGVDSAESTLDDCKSALSSLPEKPYSTSLPSMAASSGDFPLAYSFQNRIVSVFAAKVFGAFDMCQSPSLYSWNALETHFCTLGGDVAGICMPEACSENVLRSQVNNVEFIAFLAGLKANATLAMSPACVFDPLLTPYCAEEGAGADFFDRLYNSWLIFSKDGVTCGSGFTPMTAGARHMIALIVILALLIMVGTLWGLQYKRALRKVEEESAGAGDEKDKMPDGSPRLPQVGVPPRERRVAQPVAPFFKAFDVRDNLREIFALNTRPGEFSCFDGMRYFSCGWVVLYHVILWQTRFIMNPEVRGRGGGRVGMR 332
            MGLTRSPAFIACVAVLVCGMGVDSAESTLDDCKSALSSLPEKPYSTSLPSMAASSGDFPLAYSFQNRIVSVFAAKVFGAFDMCQSPSLYSWNALETHFCTLGGDVAGICMPEACSENVLRSQVNNVEFIAFLAGLKANATLAMSPACVFDPLLTPYCAEEGAGADFFDRLYNSWLIFSKDGVTCGSGFTPMTAGARHMIALIVILALLIMVGTLWGLQYKRALRKVEEESAGAGDEKDKMPDGSPRLPQVGVPPRERRVAQPVAPFFKAFDVRDNLREIFALNTRPGEFSCFDGMRYFSCGWVVLYHVILWQTRFIMNPEVRGRGGGRVGMR
Sbjct:    1 MGLTRSPAFIACVAVLVCGMGVDSAESTLDDCKSALSSLPEKPYSTSLPSMAASSGDFPLAYSFQNRIVSVFAAKVFGAFDMCQSPSLYSWNALETHFCTLGGDVAGICMPEACSENVLRSQVNNVEFIAFLAGLKANATLAMSPACVFDPLLTPYCAEEGAGADFFDRLYNSWLIFSKDGVTCGSGFTPMTAGARHMIALIVILALLIMVGTLWGLQYKRALRKVEEESAGAGDEKDKMPDGSPRLPQVGVPPRERRVAQPVAPFFKAFDVRDNLREIFALNTRPGEFSCFDGMRYFSCGWVVLYHVILWQTRFIMNPEVRGRGGGRVGMR 332          
BLAST of EWM24770.1 vs. NCBI_GenBank
Match: gi|553189731|ref|XP_005855059.1| (ring zinc finger-containing protein [Nannochloropsis gaditana CCMP526] >gi|422293995|gb|EKU21295.1| ring zinc finger-containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 90.8929 bits (224), Expect = 1.278e-16
Identity = 63/220 (28.64%), Postives = 102/220 (46.36%), Query Frame = 0
Query:   24 SAESTLDDCKSALSSLPEKPYSTSLPSMAASSGDFPLAYSFQNRIVSVFAAKVFGAFDMCQSPSLYSWNALETHFCTLGGDVAGICMPEACSENVLRSQVNNVEFIAFLAGLKANATLAMSPACVFDPLLTPYCAEEGAGADFFDRLYNSWLIFSKD------GVTCGSGFTPMTAGARHMIALIVILALLIMVGTLWGLQYKRALRKVEEESAGAGDEK 237
            +A++ +  C  AL+ L   PY+ SLP +   SG   +AY +Q  + +V   +  G FD+C+   LY+   ++TH+C L  D AGIC+P  C    L    +N   +  +  L  +A+  +   C  +  LT  CA      ++F  LYN  ++   D       VTC +      A A  M+   ++ A L ++G  W  QY  A+       A  GD++
Sbjct:   28 TAQAEIQGCIQALARLNTAPYNASLPFLNGVSGHVNVAYLYQKPMFAVMPNEAMGNFDLCRHSELYTSGLVKTHYCALSHDKAGICVPTECRAEDL----HNKAILQPVMNLGIHASTVIPEECAMNLHLTQGCAYSRQALEYFHSLYNLLVLLGNDTPQSTGSVTCTTRAHTAEASAYTMLGFTLLFATLALLGAAW--QYFHAV-------AHHGDKR 234          

HSP 2 Score: 73.9442 bits (180), Expect = 5.562e-11
Identity = 38/83 (45.78%), Postives = 46/83 (55.42%), Query Frame = 0
Query:  239 KMPDGSPRLPQV-GVPPRERRVAQPVAPFFKAFDVRDNLREIFALNTRPGEFSCFDGMRYFSCGWVVLYHVILWQTRFIMNPE 320
            K PD    + QV  VPP  + ++        AF   DNL EIF L  R GEF+ FDGM+  S  WVV YHV+LWQ   + NPE
Sbjct:  344 KQPDMVELMAQVLKVPPCPKPIS--------AFSFVDNLNEIFTLKARGGEFAIFDGMKAISAAWVVFYHVLLWQIYLVQNPE 418          
BLAST of EWM24770.1 vs. NCBI_GenBank
Match: gi|585109546|gb|EWM27341.1| (Acyltransferase 3 [Nannochloropsis gaditana])

HSP 1 Score: 90.1225 bits (222), Expect = 3.051e-16
Identity = 60/214 (28.04%), Postives = 100/214 (46.73%), Query Frame = 0
Query:   24 SAESTLDDCKSALSSLPEKPYSTSLPSMAASSGDFPLAYSFQNRIVSVFAAKVFGAFDMCQSPSLYSWNALETHFCTLGGDVAGICMPEACSENVLRSQVNNVEFIAFLAGLKANATLAMSPACVFDPLLTPYCAEEGAGADFFDRLYNSWLIFSKD------GVTCGSGFTPMTAGARHMIALIVILALLIMVGTLWGLQYKRALRKVEEESA 231
            +A++ +  C  AL+ L   PY+ SLP +   SG   +AY +Q  + +V   +  G FD+C+   LY+   ++TH+C L  D AGIC+P  C        ++N   +  +  L  +A+  +   C  +  LT  CA      ++F  LYN  ++   D       VTC +      A A  M+   ++ A L ++G  W  QY  A+    ++ A
Sbjct:   28 TAQAEIQGCIQALARLNTAPYNASLPFLNGVSGHVNVAYLYQKPMFAVMPNEAMGNFDLCRHSELYTSGLVKTHYCALSHDKAGICVPTECRA----EDLHNKAILQPVMNLGIHASTVIPEECAMNLHLTQGCAYSRQALEYFHSLYNLLVLLGNDTPQSTGSVTCTTRAHTAEASAYTMLGFTLLFATLALLGAAW--QYFHAVAHHGDKRA 235          

HSP 2 Score: 73.1738 bits (178), Expect = 1.551e-10
Identity = 38/83 (45.78%), Postives = 46/83 (55.42%), Query Frame = 0
Query:  239 KMPDGSPRLPQV-GVPPRERRVAQPVAPFFKAFDVRDNLREIFALNTRPGEFSCFDGMRYFSCGWVVLYHVILWQTRFIMNPE 320
            K PD    + QV  VPP  + ++        AF   DNL EIF L  R GEF+ FDGM+  S  WVV YHV+LWQ   + NPE
Sbjct:  344 KQPDMVELMAQVLKVPPCPKPIS--------AFSFVDNLNEIFTLKARGGEFAIFDGMKAISAAWVVFYHVLLWQIYLVQNPE 418          
The following BLAST results are available for this feature:
BLAST of EWM24770.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585106335|gb|EWM24770.1|0.000e+0100.00hypothetical protein Naga_100255g1 [Nannochloropsi... [more]
gi|553189731|ref|XP_005855059.1|1.278e-1628.64ring zinc finger-containing protein [Nannochlorops... [more]
gi|585109546|gb|EWM27341.1|3.051e-1628.04Acyltransferase 3 [Nannochloropsis gaditana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5915rna5915Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications