EWM24782.1, cds5892 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24782.1 vs. NCBI_GenBank
Match: gi|585106357|gb|EWM24782.1| (GTPase-like protein [Nannochloropsis gaditana]) HSP 1 Score: 167.933 bits (424), Expect = 7.403e-53 Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0
Query: 1 MTMEAMRASLRPGVQYVIILTKADKKDGKVSPSLKQQVADALEAHQLKETTPVLVTSAVNRLGRDEVWRYLRLAVTKPEENR 82
MTMEAMRASLRPGVQYVIILTKADKKDGKVSPSLKQQVADALEAHQLKETTPVLVTSAVNRLGRDEVWRYLRLAVTKPEENR
Sbjct: 1 MTMEAMRASLRPGVQYVIILTKADKKDGKVSPSLKQQVADALEAHQLKETTPVLVTSAVNRLGRDEVWRYLRLAVTKPEENR 82
BLAST of EWM24782.1 vs. NCBI_GenBank
Match: gi|298714913|emb|CBJ27669.1| (YihA4, YihA/EngB-like GTPase [Ectocarpus siliculosus]) HSP 1 Score: 60.8474 bits (146), Expect = 5.034e-9 Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 0
Query: 14 VQYVIILTKADKKDGKVSPSLKQQVADALEAHQLKETTPVLVTSAVNRLGRDEVWRYLRLAV 75
+YV++LTKADK D VS + + V AL + T PV++TSA ++LGRD +WRYLRLA
Sbjct: 553 ARYVVVLTKADKSDNSVSRQVLEGVVAALREAGVSRT-PVVLTSAASKLGRDGMWRYLRLAA 613
BLAST of EWM24782.1 vs. NCBI_GenBank
Match: gi|551627248|ref|XP_005793605.1| (GTP-binding protein engB [Emiliania huxleyi CCMP1516] >gi|485648267|gb|EOD41176.1| GTP-binding protein engB [Emiliania huxleyi CCMP1516]) HSP 1 Score: 59.3066 bits (142), Expect = 2.169e-8 Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = 0
Query: 8 ASLRPGVQYVIILTKADKKDGKVSPSLKQQVADALEAHQLKETTPVLVTSAVNRLGRDEVWRYLR 72
+ L P + Y ++LTKADK DG+VS QV ALE+ TP++ +SA R+GR+ VW LR
Sbjct: 460 SGLAPPLDYAVVLTKADKNDGRVSSRTVDQVRRALESAGCPAATPLVPSSAKTRMGREAVWMLLR 524
BLAST of EWM24782.1 vs. NCBI_GenBank
Match: gi|544216020|ref|XP_005538155.1| (similar to GTP-binding protein [Cyanidioschyzon merolae strain 10D] >gi|449018717|dbj|BAM82119.1| similar to GTP-binding protein [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 58.9214 bits (141), Expect = 2.987e-8 Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 0
Query: 14 VQYVIILTKADKKDGKVSPSLKQQVADALEAHQLKET--TPVLVTSAVNRLGRDEVWRYLRL 73
+ YV++LTK DK+DG V PS+ ++ LE+ L + PVL TSA + GR+ VW+YLRL
Sbjct: 450 LHYVVVLTKIDKQDGSVPPSVFDRLEQVLESTGLLSSREIPVLTTSAQTKAGREAVWQYLRL 511
BLAST of EWM24782.1 vs. NCBI_GenBank
Match: gi|1210526202|dbj|GAX15120.1| (GTP-binding protein [Fistulifera solaris]) HSP 1 Score: 56.9954 bits (136), Expect = 1.392e-7 Identity = 31/71 (43.66%), Postives = 46/71 (64.79%), Query Frame = 0
Query: 12 PGVQYVIILTKADKK--------DGKVSPSLKQQVADALEAHQLKETTPVLVTSAVNRLGRDEVWRYLRLA 74
P VQYVI+LTKADK GKVS + ++V +E + + + PV+++SA +LGR+E+W+YLR A
Sbjct: 499 PHVQYVIVLTKADKNVKGAAATNTGKVSRDVMKKVQTTMEENGVAKA-PVILSSAQTKLGRNEIWKYLRRA 568
BLAST of EWM24782.1 vs. NCBI_GenBank
Match: gi|1210517357|dbj|GAX23614.1| (hypothetical protein FisN_12Hh186 [Fistulifera solaris]) HSP 1 Score: 55.0694 bits (131), Expect = 6.144e-7 Identity = 30/71 (42.25%), Postives = 45/71 (63.38%), Query Frame = 0
Query: 12 PGVQYVIILTKADKK--------DGKVSPSLKQQVADALEAHQLKETTPVLVTSAVNRLGRDEVWRYLRLA 74
P V YVI+LTKADK GKVS + ++V +E + + + PV+++SA +LGR+E+W+YLR A
Sbjct: 500 PHVHYVIVLTKADKNVKGAAATNTGKVSRDVMKKVQKTMEENGVAKA-PVILSSAQTKLGRNEIWKYLRRA 569
BLAST of EWM24782.1 vs. NCBI_GenBank
Match: gi|397625816|gb|EJK67924.1| (hypothetical protein THAOC_10965 [Thalassiosira oceanica]) HSP 1 Score: 53.9138 bits (128), Expect = 9.808e-7 Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 0
Query: 15 QYVIILTKADKKDGKVSPSLKQQVADALEAHQLKET--------TPVLVTSAVNRLGRDEVWRYLRLAVTK 77
+YV++LTK DK S VA A+E QL++T PV++TS+ RLGRDEVW+YL+LA +
Sbjct: 147 KYVVVLTKGDKNVKNASSKNPGTVARAVE-EQLRQTMEQNGVGYAPVVLTSSETRLGRDEVWKYLKLAAAR 216 The following BLAST results are available for this feature:
BLAST of EWM24782.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 7
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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