EWM24782.1, cds5892 (CDS) Nannochloropsis gaditana

Overview
NameEWM24782.1
Unique Namecds5892
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:54059..54095 -
Alignment locationCM002467.1:53633..53844 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24782.1
ProductGTPase-like protein
Orig transcript idgnl|cribi|Naga_101342g1.9595.mrna
GeneYihA4
GbkeyCDS
Notelike gtpase
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:54059..54095 -
CM002467.1supercontigCM002467.1:53633..53844 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Homology
BLAST of EWM24782.1 vs. NCBI_GenBank
Match: gi|585106357|gb|EWM24782.1| (GTPase-like protein [Nannochloropsis gaditana])

HSP 1 Score: 167.933 bits (424), Expect = 7.403e-53
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0
Query:    1 MTMEAMRASLRPGVQYVIILTKADKKDGKVSPSLKQQVADALEAHQLKETTPVLVTSAVNRLGRDEVWRYLRLAVTKPEENR 82
            MTMEAMRASLRPGVQYVIILTKADKKDGKVSPSLKQQVADALEAHQLKETTPVLVTSAVNRLGRDEVWRYLRLAVTKPEENR
Sbjct:    1 MTMEAMRASLRPGVQYVIILTKADKKDGKVSPSLKQQVADALEAHQLKETTPVLVTSAVNRLGRDEVWRYLRLAVTKPEENR 82          
BLAST of EWM24782.1 vs. NCBI_GenBank
Match: gi|298714913|emb|CBJ27669.1| (YihA4, YihA/EngB-like GTPase [Ectocarpus siliculosus])

HSP 1 Score: 60.8474 bits (146), Expect = 5.034e-9
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 0
Query:   14 VQYVIILTKADKKDGKVSPSLKQQVADALEAHQLKETTPVLVTSAVNRLGRDEVWRYLRLAV 75
             +YV++LTKADK D  VS  + + V  AL    +  T PV++TSA ++LGRD +WRYLRLA 
Sbjct:  553 ARYVVVLTKADKSDNSVSRQVLEGVVAALREAGVSRT-PVVLTSAASKLGRDGMWRYLRLAA 613          
BLAST of EWM24782.1 vs. NCBI_GenBank
Match: gi|551627248|ref|XP_005793605.1| (GTP-binding protein engB [Emiliania huxleyi CCMP1516] >gi|485648267|gb|EOD41176.1| GTP-binding protein engB [Emiliania huxleyi CCMP1516])

HSP 1 Score: 59.3066 bits (142), Expect = 2.169e-8
Identity = 29/65 (44.62%), Postives = 40/65 (61.54%), Query Frame = 0
Query:    8 ASLRPGVQYVIILTKADKKDGKVSPSLKQQVADALEAHQLKETTPVLVTSAVNRLGRDEVWRYLR 72
            + L P + Y ++LTKADK DG+VS     QV  ALE+      TP++ +SA  R+GR+ VW  LR
Sbjct:  460 SGLAPPLDYAVVLTKADKNDGRVSSRTVDQVRRALESAGCPAATPLVPSSAKTRMGREAVWMLLR 524          
BLAST of EWM24782.1 vs. NCBI_GenBank
Match: gi|544216020|ref|XP_005538155.1| (similar to GTP-binding protein [Cyanidioschyzon merolae strain 10D] >gi|449018717|dbj|BAM82119.1| similar to GTP-binding protein [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 58.9214 bits (141), Expect = 2.987e-8
Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 0
Query:   14 VQYVIILTKADKKDGKVSPSLKQQVADALEAHQLKET--TPVLVTSAVNRLGRDEVWRYLRL 73
            + YV++LTK DK+DG V PS+  ++   LE+  L  +   PVL TSA  + GR+ VW+YLRL
Sbjct:  450 LHYVVVLTKIDKQDGSVPPSVFDRLEQVLESTGLLSSREIPVLTTSAQTKAGREAVWQYLRL 511          
BLAST of EWM24782.1 vs. NCBI_GenBank
Match: gi|1210526202|dbj|GAX15120.1| (GTP-binding protein [Fistulifera solaris])

HSP 1 Score: 56.9954 bits (136), Expect = 1.392e-7
Identity = 31/71 (43.66%), Postives = 46/71 (64.79%), Query Frame = 0
Query:   12 PGVQYVIILTKADKK--------DGKVSPSLKQQVADALEAHQLKETTPVLVTSAVNRLGRDEVWRYLRLA 74
            P VQYVI+LTKADK          GKVS  + ++V   +E + + +  PV+++SA  +LGR+E+W+YLR A
Sbjct:  499 PHVQYVIVLTKADKNVKGAAATNTGKVSRDVMKKVQTTMEENGVAKA-PVILSSAQTKLGRNEIWKYLRRA 568          
BLAST of EWM24782.1 vs. NCBI_GenBank
Match: gi|1210517357|dbj|GAX23614.1| (hypothetical protein FisN_12Hh186 [Fistulifera solaris])

HSP 1 Score: 55.0694 bits (131), Expect = 6.144e-7
Identity = 30/71 (42.25%), Postives = 45/71 (63.38%), Query Frame = 0
Query:   12 PGVQYVIILTKADKK--------DGKVSPSLKQQVADALEAHQLKETTPVLVTSAVNRLGRDEVWRYLRLA 74
            P V YVI+LTKADK          GKVS  + ++V   +E + + +  PV+++SA  +LGR+E+W+YLR A
Sbjct:  500 PHVHYVIVLTKADKNVKGAAATNTGKVSRDVMKKVQKTMEENGVAKA-PVILSSAQTKLGRNEIWKYLRRA 569          
BLAST of EWM24782.1 vs. NCBI_GenBank
Match: gi|397625816|gb|EJK67924.1| (hypothetical protein THAOC_10965 [Thalassiosira oceanica])

HSP 1 Score: 53.9138 bits (128), Expect = 9.808e-7
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 0
Query:   15 QYVIILTKADKKDGKVSPSLKQQVADALEAHQLKET--------TPVLVTSAVNRLGRDEVWRYLRLAVTK 77
            +YV++LTK DK     S      VA A+E  QL++T         PV++TS+  RLGRDEVW+YL+LA  +
Sbjct:  147 KYVVVLTKGDKNVKNASSKNPGTVARAVE-EQLRQTMEQNGVGYAPVVLTSSETRLGRDEVWKYLKLAAAR 216          
The following BLAST results are available for this feature:
BLAST of EWM24782.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585106357|gb|EWM24782.1|7.403e-53100.00GTPase-like protein [Nannochloropsis gaditana][more]
gi|298714913|emb|CBJ27669.1|5.034e-950.00YihA4, YihA/EngB-like GTPase [Ectocarpus siliculos... [more]
gi|551627248|ref|XP_005793605.1|2.169e-844.62GTP-binding protein engB [Emiliania huxleyi CCMP15... [more]
gi|544216020|ref|XP_005538155.1|2.987e-846.77similar to GTP-binding protein [Cyanidioschyzon me... [more]
gi|1210526202|dbj|GAX15120.1|1.392e-743.66GTP-binding protein [Fistulifera solaris][more]
gi|1210517357|dbj|GAX23614.1|6.144e-742.25hypothetical protein FisN_12Hh186 [Fistulifera sol... [more]
gi|397625816|gb|EJK67924.1|9.808e-743.66hypothetical protein THAOC_10965 [Thalassiosira oc... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5907rna5907Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications