EWM24789.1, cds5884 (CDS) Nannochloropsis gaditana

Overview
NameEWM24789.1
Unique Namecds5884
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002467.1:27146..27265 +
Alignment locationCM002467.1:27472..27555 +
Alignment locationCM002467.1:27678..27764 +
Alignment locationCM002467.1:27848..27964 +
Alignment locationCM002467.1:28139..28315 +
Alignment locationCM002467.1:28450..28587 +
Alignment locationCM002467.1:28695..28811 +
Alignment locationCM002467.1:28977..29271 +

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Properties
Property NameValue
End range.
End range29271
Protein idEWM24789.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100912g2.9914.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002467.1supercontigCM002467.1:27146..27265 +
CM002467.1supercontigCM002467.1:27472..27555 +
CM002467.1supercontigCM002467.1:27678..27764 +
CM002467.1supercontigCM002467.1:27848..27964 +
CM002467.1supercontigCM002467.1:28139..28315 +
CM002467.1supercontigCM002467.1:28450..28587 +
CM002467.1supercontigCM002467.1:28695..28811 +
CM002467.1supercontigCM002467.1:28977..29271 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM24789.1 vs. NCBI_GenBank
Match: gi|585106376|gb|EWM24789.1| (hypothetical protein Naga_100912g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 767.689 bits (1981), Expect = 0.000e+0
Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 0
Query:    1 MHSYKFFLAAIILAREVYAQKSVLAVKPTLNASQAMTLNYVDPPASIILNTRDFPIQMAYTDIPEGLIMDLHVDLIGDNSWFGGGLKQVEGPDGTVTVPIEVRVPSYIAGNLSVHAFLTPAGGSFQARVANAPELEVGIDRTPVNAIGVLCQPRAVQPGQPFVVNLWFTQTHPRPMDLIAVALDGDTKEYYGGFQVPVKAQQGHVSGRFDLRPAPLTAPLKFKAWLSPRGEVAPNYVTYTMLNIPLGPETVQPCNPDPDNEWTETGIPPANWVELHDVPKVLTPGEKANIRLVYNLVPESQKAATNATVSLMMWDWKVRLPPSFFLSVFPPSLIQSMPPRGSHFCNICPVSRPSTTAPIPIPNPPPSLPPSLPPSLPP 378
            MHSYKFFLAAIILAREVYAQKSVLAVKPTLNASQAMTLNYVDPPASIILNTRDFPIQMAYTDIPEGLIMDLHVDLIGDNSWFGGGLKQVEGPDGTVTVPIEVRVPSYIAGNLSVHAFLTPAGGSFQARVANAPELEVGIDRTPVNAIGVLCQPRAVQPGQPFVVNLWFTQTHPRPMDLIAVALDGDTKEYYGGFQVPVKAQQGHVSGRFDLRPAPLTAPLKFKAWLSPRGEVAPNYVTYTMLNIPLGPETVQPCNPDPDNEWTETGIPPANWVELHDVPKVLTPGEKANIRLVYNLVPESQKAATNATVSLMMWDWKVRLPPSFFLSVFPPSLIQSMPPRGSHFCNICPVSRPSTTAPIPIPNPPPSLPPSLPPSLPP
Sbjct:    1 MHSYKFFLAAIILAREVYAQKSVLAVKPTLNASQAMTLNYVDPPASIILNTRDFPIQMAYTDIPEGLIMDLHVDLIGDNSWFGGGLKQVEGPDGTVTVPIEVRVPSYIAGNLSVHAFLTPAGGSFQARVANAPELEVGIDRTPVNAIGVLCQPRAVQPGQPFVVNLWFTQTHPRPMDLIAVALDGDTKEYYGGFQVPVKAQQGHVSGRFDLRPAPLTAPLKFKAWLSPRGEVAPNYVTYTMLNIPLGPETVQPCNPDPDNEWTETGIPPANWVELHDVPKVLTPGEKANIRLVYNLVPESQKAATNATVSLMMWDWKVRLPPSFFLSVFPPSLIQSMPPRGSHFCNICPVSRPSTTAPIPIPNPPPSLPPSLPPSLPP 378          
BLAST of EWM24789.1 vs. NCBI_GenBank
Match: gi|585107214|gb|EWM25453.1| (hypothetical protein Naga_100005g20 [Nannochloropsis gaditana])

HSP 1 Score: 80.8777 bits (198), Expect = 1.117e-13
Identity = 55/183 (30.05%), Postives = 85/183 (46.45%), Query Frame = 0
Query:  127 ARVANAPELEVGIDRTPVNAIGVLCQPRAVQPGQPFVVNLWFTQTHPRPMDLIAVALDGDTKEYYGGFQVPVKAQQGHVSGRFDLRPAPLTAPLKFKAWLSPRGEVAPNYVTYTMLNIPLGPETVQPCNPDPDNEWTETGIPPANWVELHDVPKVLTPGEKANIRLVYNLVPESQKAATNATV 309
            A V+  PE      RTP   + VLC P++V    PF VNL +     RPM +    L+ DT E+  G  V V    G V+ R  + P     P K+ A+++P+ E  PN +  T     LG + + PC P  +   + +     ++V + D P     G K  + + YNL+P+      +AT+
Sbjct:   23 ASVSTEPET-----RTPKPMLKVLCMPKSVALNTPFYVNLEYAAPFSRPMAIHVDLLNADTNEWQAGDVVKVTGAAGKVTSRI-VVPQDAKTPFKWFAYIAPQDENWPNMLATTTFTADLGAKVMAPCAPLRNTARSPSKPVDFDYVLVKDYPSAFHAGAKTPVEVQYNLMPDQPSMYVSATL 199          
BLAST of EWM24789.1 vs. NCBI_GenBank
Match: gi|585107121|gb|EWM25360.1| (hypothetical protein Naga_100005g21 [Nannochloropsis gaditana])

HSP 1 Score: 80.8777 bits (198), Expect = 1.230e-13
Identity = 55/183 (30.05%), Postives = 85/183 (46.45%), Query Frame = 0
Query:  127 ARVANAPELEVGIDRTPVNAIGVLCQPRAVQPGQPFVVNLWFTQTHPRPMDLIAVALDGDTKEYYGGFQVPVKAQQGHVSGRFDLRPAPLTAPLKFKAWLSPRGEVAPNYVTYTMLNIPLGPETVQPCNPDPDNEWTETGIPPANWVELHDVPKVLTPGEKANIRLVYNLVPESQKAATNATV 309
            A V+  PE      RTP   + VLC P++V    PF VNL +     RPM +    L+ DT E+  G  V V    G V+ R  + P     P K+ A+++P+ E  PN +  T     LG + + PC P  +   + +     ++V + D P     G K  + + YNL+P+      +AT+
Sbjct:   23 ASVSTEPET-----RTPKPMLKVLCMPKSVALNTPFYVNLEYAAPFSRPMAIHVDLLNADTNEWQAGDVVKVTGAAGKVTSRI-VVPQDAKTPFKWFAYIAPQDENWPNMLATTTFTADLGAKVMAPCAPLRNTARSPSKPVDFDYVLVKDYPSAFHAGAKTPVEVQYNLMPDQPSMYVSATL 199          
BLAST of EWM24789.1 vs. NCBI_GenBank
Match: gi|585112805|gb|EWM30149.1| (hypothetical protein Naga_100115g7 [Nannochloropsis gaditana])

HSP 1 Score: 80.1073 bits (196), Expect = 7.915e-13
Identity = 57/187 (30.48%), Postives = 84/187 (44.92%), Query Frame = 0
Query:  147 IGVLCQPRAVQPGQPFVVNLWFTQTHPRPMDLIAVALDGDTKEYYGGFQVPVKAQQGHVSGRFDLRPAPLTAPLKFKAWLSPRGEVAPNYVTYTMLNIPLGPETVQPCNPDPDNEWT----ETGIPPANWVELHDVPKVLTPGEKANIRLVYNLVPESQKAATNATVSLMMWDWKVRLPPSFFLSVF 329
            I V+C P  V  G+PF VN+ +T    RP+D+    L+  TK +Y G       Q G VS    +    +  P  +K +L+PRGE  PN +  T     L       C P     +        +   ++V L  VP VLTPG +A + + YNLV      A  A +S+ +    +R  P+  +S F
Sbjct:  157 IEVMCHPETVAMGKPFTVNVKYTSDIKRPVDVHVDVLNAHTKAFYAGKWEEFDTQAGEVSLTIQMPSWGVEEPFLWKVFLTPRGEPFPNMLAETGFVAHLADYVKNDCAPFKSYGFDPPELANNVKTVDFVALQKVPAVLTPGSQAMVDVEYNLV-----GAAKAILSVAL----MRKGPNTIISSF 334          
The following BLAST results are available for this feature:
BLAST of EWM24789.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585106376|gb|EWM24789.1|0.000e+0100.00hypothetical protein Naga_100912g2, partial [Nanno... [more]
gi|585107214|gb|EWM25453.1|1.117e-1330.05hypothetical protein Naga_100005g20 [Nannochlorops... [more]
gi|585107121|gb|EWM25360.1|1.230e-1330.05hypothetical protein Naga_100005g21 [Nannochlorops... [more]
gi|585112805|gb|EWM30149.1|7.915e-1330.48hypothetical protein Naga_100115g7 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5899rna5899Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications