EWM24789.1, cds5884 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM24789.1 vs. NCBI_GenBank
Match: gi|585106376|gb|EWM24789.1| (hypothetical protein Naga_100912g2, partial [Nannochloropsis gaditana]) HSP 1 Score: 767.689 bits (1981), Expect = 0.000e+0 Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 0
Query: 1 MHSYKFFLAAIILAREVYAQKSVLAVKPTLNASQAMTLNYVDPPASIILNTRDFPIQMAYTDIPEGLIMDLHVDLIGDNSWFGGGLKQVEGPDGTVTVPIEVRVPSYIAGNLSVHAFLTPAGGSFQARVANAPELEVGIDRTPVNAIGVLCQPRAVQPGQPFVVNLWFTQTHPRPMDLIAVALDGDTKEYYGGFQVPVKAQQGHVSGRFDLRPAPLTAPLKFKAWLSPRGEVAPNYVTYTMLNIPLGPETVQPCNPDPDNEWTETGIPPANWVELHDVPKVLTPGEKANIRLVYNLVPESQKAATNATVSLMMWDWKVRLPPSFFLSVFPPSLIQSMPPRGSHFCNICPVSRPSTTAPIPIPNPPPSLPPSLPPSLPP 378
MHSYKFFLAAIILAREVYAQKSVLAVKPTLNASQAMTLNYVDPPASIILNTRDFPIQMAYTDIPEGLIMDLHVDLIGDNSWFGGGLKQVEGPDGTVTVPIEVRVPSYIAGNLSVHAFLTPAGGSFQARVANAPELEVGIDRTPVNAIGVLCQPRAVQPGQPFVVNLWFTQTHPRPMDLIAVALDGDTKEYYGGFQVPVKAQQGHVSGRFDLRPAPLTAPLKFKAWLSPRGEVAPNYVTYTMLNIPLGPETVQPCNPDPDNEWTETGIPPANWVELHDVPKVLTPGEKANIRLVYNLVPESQKAATNATVSLMMWDWKVRLPPSFFLSVFPPSLIQSMPPRGSHFCNICPVSRPSTTAPIPIPNPPPSLPPSLPPSLPP
Sbjct: 1 MHSYKFFLAAIILAREVYAQKSVLAVKPTLNASQAMTLNYVDPPASIILNTRDFPIQMAYTDIPEGLIMDLHVDLIGDNSWFGGGLKQVEGPDGTVTVPIEVRVPSYIAGNLSVHAFLTPAGGSFQARVANAPELEVGIDRTPVNAIGVLCQPRAVQPGQPFVVNLWFTQTHPRPMDLIAVALDGDTKEYYGGFQVPVKAQQGHVSGRFDLRPAPLTAPLKFKAWLSPRGEVAPNYVTYTMLNIPLGPETVQPCNPDPDNEWTETGIPPANWVELHDVPKVLTPGEKANIRLVYNLVPESQKAATNATVSLMMWDWKVRLPPSFFLSVFPPSLIQSMPPRGSHFCNICPVSRPSTTAPIPIPNPPPSLPPSLPPSLPP 378
BLAST of EWM24789.1 vs. NCBI_GenBank
Match: gi|585107214|gb|EWM25453.1| (hypothetical protein Naga_100005g20 [Nannochloropsis gaditana]) HSP 1 Score: 80.8777 bits (198), Expect = 1.117e-13 Identity = 55/183 (30.05%), Postives = 85/183 (46.45%), Query Frame = 0
Query: 127 ARVANAPELEVGIDRTPVNAIGVLCQPRAVQPGQPFVVNLWFTQTHPRPMDLIAVALDGDTKEYYGGFQVPVKAQQGHVSGRFDLRPAPLTAPLKFKAWLSPRGEVAPNYVTYTMLNIPLGPETVQPCNPDPDNEWTETGIPPANWVELHDVPKVLTPGEKANIRLVYNLVPESQKAATNATV 309
A V+ PE RTP + VLC P++V PF VNL + RPM + L+ DT E+ G V V G V+ R + P P K+ A+++P+ E PN + T LG + + PC P + + + ++V + D P G K + + YNL+P+ +AT+
Sbjct: 23 ASVSTEPET-----RTPKPMLKVLCMPKSVALNTPFYVNLEYAAPFSRPMAIHVDLLNADTNEWQAGDVVKVTGAAGKVTSRI-VVPQDAKTPFKWFAYIAPQDENWPNMLATTTFTADLGAKVMAPCAPLRNTARSPSKPVDFDYVLVKDYPSAFHAGAKTPVEVQYNLMPDQPSMYVSATL 199
BLAST of EWM24789.1 vs. NCBI_GenBank
Match: gi|585107121|gb|EWM25360.1| (hypothetical protein Naga_100005g21 [Nannochloropsis gaditana]) HSP 1 Score: 80.8777 bits (198), Expect = 1.230e-13 Identity = 55/183 (30.05%), Postives = 85/183 (46.45%), Query Frame = 0
Query: 127 ARVANAPELEVGIDRTPVNAIGVLCQPRAVQPGQPFVVNLWFTQTHPRPMDLIAVALDGDTKEYYGGFQVPVKAQQGHVSGRFDLRPAPLTAPLKFKAWLSPRGEVAPNYVTYTMLNIPLGPETVQPCNPDPDNEWTETGIPPANWVELHDVPKVLTPGEKANIRLVYNLVPESQKAATNATV 309
A V+ PE RTP + VLC P++V PF VNL + RPM + L+ DT E+ G V V G V+ R + P P K+ A+++P+ E PN + T LG + + PC P + + + ++V + D P G K + + YNL+P+ +AT+
Sbjct: 23 ASVSTEPET-----RTPKPMLKVLCMPKSVALNTPFYVNLEYAAPFSRPMAIHVDLLNADTNEWQAGDVVKVTGAAGKVTSRI-VVPQDAKTPFKWFAYIAPQDENWPNMLATTTFTADLGAKVMAPCAPLRNTARSPSKPVDFDYVLVKDYPSAFHAGAKTPVEVQYNLMPDQPSMYVSATL 199
BLAST of EWM24789.1 vs. NCBI_GenBank
Match: gi|585112805|gb|EWM30149.1| (hypothetical protein Naga_100115g7 [Nannochloropsis gaditana]) HSP 1 Score: 80.1073 bits (196), Expect = 7.915e-13 Identity = 57/187 (30.48%), Postives = 84/187 (44.92%), Query Frame = 0
Query: 147 IGVLCQPRAVQPGQPFVVNLWFTQTHPRPMDLIAVALDGDTKEYYGGFQVPVKAQQGHVSGRFDLRPAPLTAPLKFKAWLSPRGEVAPNYVTYTMLNIPLGPETVQPCNPDPDNEWT----ETGIPPANWVELHDVPKVLTPGEKANIRLVYNLVPESQKAATNATVSLMMWDWKVRLPPSFFLSVF 329
I V+C P V G+PF VN+ +T RP+D+ L+ TK +Y G Q G VS + + P +K +L+PRGE PN + T L C P + + ++V L VP VLTPG +A + + YNLV A A +S+ + +R P+ +S F
Sbjct: 157 IEVMCHPETVAMGKPFTVNVKYTSDIKRPVDVHVDVLNAHTKAFYAGKWEEFDTQAGEVSLTIQMPSWGVEEPFLWKVFLTPRGEPFPNMLAETGFVAHLADYVKNDCAPFKSYGFDPPELANNVKTVDFVALQKVPAVLTPGSQAMVDVEYNLV-----GAAKAILSVAL----MRKGPNTIISSF 334 The following BLAST results are available for this feature:
BLAST of EWM24789.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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