EWM24828.1, cds5843 (CDS) Nannochloropsis gaditana

Overview
NameEWM24828.1
Unique Namecds5843
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:1005789..1006069 +
Alignment locationCM002466.1:1006268..1006898 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24828.1
Productsse2p
Orig transcript idgnl|cribi|Naga_100234g5.1032.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:1005789..1006069 +
CM002466.1supercontigCM002466.1:1006268..1006898 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
Vocabulary: INTERPRO
TermDefinition
IPR013126Hsp_70_fam
Homology
BLAST of EWM24828.1 vs. NCBI_GenBank
Match: gi|585106424|gb|EWM24828.1| (sse2p [Nannochloropsis gaditana])

HSP 1 Score: 602.438 bits (1552), Expect = 0.000e+0
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 0
Query:    1 MSTNWKSHLGSTHTHRWQEFKTKAPRLKSEGGRMWLWSCATGRTAHCAFKKQPQAPASSVSFLPLLLLTYLLLHADASLLTPISLGIDLGNHKSVVALAQGHGIDVHVNEMGRRETPSAVLLRGRRRHFGDLALAGAGAAPASAVSELRRLLALGLPVDDEDGGRGDGGDESKDVAEVFGAAVVGTGGAEDPCHVGPRVRVEHDGRALTLSARQVLAMFVAHLRKGVEAAHGDDNVLNTVLSVPAWFGRSQRALVVDAARIAGCASPACVTDGTALALGYGLLNVVRGGGGRGGEVGGGRGGP 303
            MSTNWKSHLGSTHTHRWQEFKTKAPRLKSEGGRMWLWSCATGRTAHCAFKKQPQAPASSVSFLPLLLLTYLLLHADASLLTPISLGIDLGNHKSVVALAQGHGIDVHVNEMGRRETPSAVLLRGRRRHFGDLALAGAGAAPASAVSELRRLLALGLPVDDEDGGRGDGGDESKDVAEVFGAAVVGTGGAEDPCHVGPRVRVEHDGRALTLSARQVLAMFVAHLRKGVEAAHGDDNVLNTVLSVPAWFGRSQRALVVDAARIAGCASPACVTDGTALALGYGLLNVVRGGGGRGGEVGGGRGGP
Sbjct:    1 MSTNWKSHLGSTHTHRWQEFKTKAPRLKSEGGRMWLWSCATGRTAHCAFKKQPQAPASSVSFLPLLLLTYLLLHADASLLTPISLGIDLGNHKSVVALAQGHGIDVHVNEMGRRETPSAVLLRGRRRHFGDLALAGAGAAPASAVSELRRLLALGLPVDDEDGGRGDGGDESKDVAEVFGAAVVGTGGAEDPCHVGPRVRVEHDGRALTLSARQVLAMFVAHLRKGVEAAHGDDNVLNTVLSVPAWFGRSQRALVVDAARIAGCASPACVTDGTALALGYGLLNVVRGGGGRGGEVGGGRGGP 303          
BLAST of EWM24828.1 vs. NCBI_GenBank
Match: gi|1159859782|gb|AQZ12974.1| (SSE2 (YBR169C) and SSE1 (YPL106C) [Zygosaccharomyces parabailii])

HSP 1 Score: 107.842 bits (268), Expect = 1.706e-22
Identity = 71/205 (34.63%), Postives = 104/205 (50.73%), Query Frame = 0
Query:   79 LLTPISLGIDLGNHKSVVALAQGHGIDVHVNEMGRRETPSAVLLRGRRRHFGDLALAGAGAAPASAVSELRRLLALGLPVDDEDGGRGDGGDESKDVAEVFGAAVVGTGGAEDPCHVGPRVRVEHDGRALTLSARQVLAMFVAHLRKGVEAAHGDDNVLNTVLSVPAWFGRSQRALVVDAARIAGCASPACVTDGTALALGYGLL 283
            + TP   G+DLGNH SV+A+A+  GID+ VNE+  R TP+ V    R R+ G+       +   + V  L+R++ LG   DD+D             A+ F + +V      D   VG RV+  + G+    SA Q+  MF   ++  V  +    N+ +  L+VPAW+   QR LV DAA+IAG      V D TA A+ YG+ 
Sbjct:    1 MSTP--FGLDLGNHSSVLAVARNRGIDIVVNEVSNRSTPTVVGFGQRNRYLGETGKNKQTSNVKNTVENLKRIIGLGY--DDKDFPEE---------AKYFTSKLVKL----DDGKVGARVK--YAGKDTVFSAAQLAGMFFDKVKHTV-ISETKANISDVCLAVPAWYTEEQRYLVADAAKIAGLNPVRVVNDVTAAAVSYGVF 185          
BLAST of EWM24828.1 vs. NCBI_GenBank
Match: gi|1206896719|emb|SJM82060.1| (probable Heat shock protein homolog SSE1 [Zygosaccharomyces bailii])

HSP 1 Score: 107.842 bits (268), Expect = 1.722e-22
Identity = 71/205 (34.63%), Postives = 104/205 (50.73%), Query Frame = 0
Query:   79 LLTPISLGIDLGNHKSVVALAQGHGIDVHVNEMGRRETPSAVLLRGRRRHFGDLALAGAGAAPASAVSELRRLLALGLPVDDEDGGRGDGGDESKDVAEVFGAAVVGTGGAEDPCHVGPRVRVEHDGRALTLSARQVLAMFVAHLRKGVEAAHGDDNVLNTVLSVPAWFGRSQRALVVDAARIAGCASPACVTDGTALALGYGLL 283
            + TP   G+DLGNH SV+A+A+  GID+ VNE+  R TP+ V    R R+ G+       +   + V  L+R++ LG   DD+D             A+ F + +V      D   VG RV+  + G+    SA Q+  MF   ++  V  +    N+ +  L+VPAW+   QR LV DAA+IAG      V D TA A+ YG+ 
Sbjct:    1 MSTP--FGLDLGNHSSVLAVARNRGIDIVVNEVSNRSTPTVVGFGQRNRYLGETGKNKQTSNVKNTVENLKRIIGLGY--DDKDFPEE---------AKYFTSKLVKL----DDGKVGARVK--YAGKDTVFSAAQLAGMFFDKVKHTV-ISETKANISDVCLAVPAWYTEEQRYLVADAAKIAGLNPVRVVNDVTAAAVSYGVF 185          
BLAST of EWM24828.1 vs. NCBI_GenBank
Match: gi|523422150|emb|CDF88411.1| (BN860_09648g1_1 [Zygosaccharomyces bailii CLIB 213])

HSP 1 Score: 107.842 bits (268), Expect = 1.877e-22
Identity = 71/205 (34.63%), Postives = 104/205 (50.73%), Query Frame = 0
Query:   79 LLTPISLGIDLGNHKSVVALAQGHGIDVHVNEMGRRETPSAVLLRGRRRHFGDLALAGAGAAPASAVSELRRLLALGLPVDDEDGGRGDGGDESKDVAEVFGAAVVGTGGAEDPCHVGPRVRVEHDGRALTLSARQVLAMFVAHLRKGVEAAHGDDNVLNTVLSVPAWFGRSQRALVVDAARIAGCASPACVTDGTALALGYGLL 283
            + TP   G+DLGNH SV+A+A+  GID+ VNE+  R TP+ V    R R+ G+       +   + V  L+R++ LG   DD+D             A+ F + +V      D   VG RV+  + G+    SA Q+  MF   ++  V  +    N+ +  L+VPAW+   QR LV DAA+IAG      V D TA A+ YG+ 
Sbjct:    1 MSTP--FGLDLGNHSSVLAVARNRGIDIVVNEVSNRSTPTVVGFGQRNRYLGETGKNKQTSNVKNTVENLKRIIGLGY--DDKDFPEE---------AKYFTSKLVKL----DDGKVGARVK--YAGKDTVFSAAQLAGMFFDKVKHTV-ISETKANISDVCLAVPAWYTEEQRYLVADAAKIAGLNPVRVVNDVTAAAVSYGVF 185          
BLAST of EWM24828.1 vs. NCBI_GenBank
Match: gi|578054030|emb|CDH10586.1| (probable Heat shock protein homolog SSE1 [Zygosaccharomyces bailii ISA1307] >gi|1159858853|gb|AQZ12045.1| SSE2 (YBR169C) and SSE1 (YPL106C) [Zygosaccharomyces parabailii])

HSP 1 Score: 107.842 bits (268), Expect = 2.042e-22
Identity = 71/205 (34.63%), Postives = 104/205 (50.73%), Query Frame = 0
Query:   79 LLTPISLGIDLGNHKSVVALAQGHGIDVHVNEMGRRETPSAVLLRGRRRHFGDLALAGAGAAPASAVSELRRLLALGLPVDDEDGGRGDGGDESKDVAEVFGAAVVGTGGAEDPCHVGPRVRVEHDGRALTLSARQVLAMFVAHLRKGVEAAHGDDNVLNTVLSVPAWFGRSQRALVVDAARIAGCASPACVTDGTALALGYGLL 283
            + TP   G+DLGNH SV+A+A+  GID+ VNE+  R TP+ V    R R+ G+       +   + V  L+R++ LG   DD+D             A+ F + +V      D   VG RV+  + G+    SA Q+  MF   ++  V  +    N+ +  L+VPAW+   QR LV DAA+IAG      V D TA A+ YG+ 
Sbjct:    1 MSTP--FGLDLGNHSSVLAVARNRGIDIVVNEVSNRSTPTVVGFGQRNRYLGETGKNKQTSNVKNTVENLKRIIGLGY--DDKDFPEE---------AKYFTSKLVKL----DDGKVGARVK--YAGKDTVFSAAQLAGMFFDKVKHTV-ISETKANISDVCLAVPAWYTEEQRYLVADAAKIAGLNPVRVVNDVTAAAVSYGVF 185          
BLAST of EWM24828.1 vs. NCBI_GenBank
Match: gi|578050138|emb|CDH14705.1| (probable Heat shock protein homolog SSE1 [Zygosaccharomyces bailii ISA1307])

HSP 1 Score: 107.457 bits (267), Expect = 2.713e-22
Identity = 71/205 (34.63%), Postives = 105/205 (51.22%), Query Frame = 0
Query:   79 LLTPISLGIDLGNHKSVVALAQGHGIDVHVNEMGRRETPSAVLLRGRRRHFGDLALAGAGAAPASAVSELRRLLALGLPVDDEDGGRGDGGDESKDVAEVFGAAVVGTGGAEDPCHVGPRVRVEHDGRALTLSARQVLAMFVAHLRKGVEAAHGDDNVLNTVLSVPAWFGRSQRALVVDAARIAGCASPACVTDGTALALGYGLL 283
            + TP   G+DLGNH SV+A+A+  GID+ VNE+  R TP+ V    R R+ G+       +   + V  L+R++ LG   DD+D           + A+ F + +V      D   VG RV+  + G+    SA Q+  MF   ++  V  +    N+ +  L+VPAW+   QR LV DAA+IAG      V D TA A+ YG+ 
Sbjct:    1 MSTP--FGLDLGNHSSVLAVARNRGIDIVVNEVSNRSTPTVVGFGQRNRYLGETGKNKQTSNVKNTVENLKRIIGLGY--DDKD---------VPEEAKYFTSKLVKL----DDGKVGARVK--YAGKDTVFSAAQLAGMFFDKVKHTV-ISETKANISDVCLAVPAWYTEEQRYLVADAAKIAGLNPVRMVNDVTAAAVSYGVF 185          
BLAST of EWM24828.1 vs. NCBI_GenBank
Match: gi|1091706642|emb|SCU91999.1| (LAMI_0E08284g1_1 [Lachancea mirantina])

HSP 1 Score: 105.531 bits (262), Expect = 1.141e-21
Identity = 68/199 (34.17%), Postives = 100/199 (50.25%), Query Frame = 0
Query:   85 LGIDLGNHKSVVALAQGHGIDVHVNEMGRRETPSAVLLRGRRRHFGDLALAGAGAAPASAVSELRRLLALGLPVDDEDGGRGDGGDESKDVAEVFGAAVVGTGGAEDPCHVGPRVRVEHDGRALTLSARQVLAMFVAHLRKGVEAAHGDDNVLNTVLSVPAWFGRSQRALVVDAARIAGCASPACVTDGTALALGYGLL 283
             G+DLGN+ SV+A+A+  GIDV VNE+  R TPS V    + R  G+       +   + V  L+R+  +GL  DD D             A+ F + +V      D   +G +VR    G   T SA Q+ AMF+  ++  V  +    N+ +  ++VPAW+   QR L+ DAA+IAG      V D TA A+ YG+ 
Sbjct:    5 FGLDLGNNNSVLAVARNRGIDVVVNEVSNRSTPSMVGFGQKNRFLGEAGKNKQTSNIKNTVDNLKRI--VGLNYDDADFATE---------AKYFSSKLVKL----DNGKIGAQVRFA--GEQQTFSATQLAAMFIDKVKNTV-ISETKANITDVAIAVPAWYTEEQRYLIADAAKIAGLNPVRIVNDVTAAAVSYGVF 185          
BLAST of EWM24828.1 vs. NCBI_GenBank
Match: gi|1091669392|emb|SCU87219.1| (LAME_0D09230g1_1 [Lachancea meyersii CBS 8951])

HSP 1 Score: 105.145 bits (261), Expect = 1.294e-21
Identity = 71/205 (34.63%), Postives = 104/205 (50.73%), Query Frame = 0
Query:   79 LLTPISLGIDLGNHKSVVALAQGHGIDVHVNEMGRRETPSAVLLRGRRRHFGDLALAGAGAAPASAVSELRRLLALGLPVDDEDGGRGDGGDESKDVAEVFGAAVVGTGGAEDPCHVGPRVRVEHDGRALTLSARQVLAMFVAHLRKGVEAAHGDDNVLNTVLSVPAWFGRSQRALVVDAARIAGCASPACVTDGTALALGYGLL 283
            + TP   G+DLGNH SV+A+A+  GID+ VNE+  R TPS V    + R  G+ A     +   + V  L+R++  G+  DD      D   ESK     F + +V     +    +G +VR+   G     SA Q++AMF+  ++  V       N+ +  ++VPAW+   QR  V DAARIAG      V D TA A+ YG+ 
Sbjct:    1 MSTP--FGLDLGNHNSVLAVARNRGIDIVVNEVSNRATPSMVGFGQKNRFLGEAAKNKQTSNIKNTVESLKRII--GMNYDD-----VDFETESK----YFQSKLVKLEDGK----IGAQVRL--GGEQAVFSATQLVAMFINKVKNTVIEDTKGSNITDVAIAVPAWYTEEQRYAVADAARIAGLNPVRVVNDVTAAAVTYGVF 186          
BLAST of EWM24828.1 vs. NCBI_GenBank
Match: gi|761760129|emb|CEP61990.1| (LALA0S04e05226g1_1 [Lachancea lanzarotensis])

HSP 1 Score: 104.375 bits (259), Expect = 2.804e-21
Identity = 72/200 (36.00%), Postives = 103/200 (51.50%), Query Frame = 0
Query:   85 LGIDLGNHKSVVALAQGHGIDVHVNEMGRRETPSAVLLRGRRRHFGDLALAGAGAAPASAVSELRRLLALGLPVDDEDGGRGDGGDESKDVAEVFGAAVVGTGGAEDPCHVGPRVRVEHDGRALTLSARQVLAMFVAHLRKG-VEAAHGDDNVLNTVLSVPAWFGRSQRALVVDAARIAGCASPACVTDGTALALGYGLL 283
             G+DLGNH SV+A+A+  GID+ VNE+  R TPS V    + R  G+ A     +   + V  L+R+  +GL  DD      D   ESK     F + +V      D   +G +VR+   G  +  SA Q++AMF+  ++   VE   G   + +  ++VPAW+   QR  V DAARIAG      V D TA A+ YG+ 
Sbjct:    5 FGLDLGNHNSVLAVARNRGIDIVVNEVSNRSTPSMVGFGQKNRFLGEGAKNKQTSNIKNTVESLKRI--VGLNYDD-----VDFETESK----YFQSKLVKL----DDGKIGAQVRL--GGEQVVFSATQLVAMFINKVKSTVVEETKG--KITDVAIAVPAWYSEEQRYAVADAARIAGLNPVRVVNDVTAAAVTYGVF 185          
BLAST of EWM24828.1 vs. NCBI_GenBank
Match: gi|365986975|ref|XP_003670319.1| (hypothetical protein NDAI_0E02590 [Naumovozyma dairenensis CBS 421] >gi|343769089|emb|CCD25076.1| hypothetical protein NDAI_0E02590 [Naumovozyma dairenensis CBS 421])

HSP 1 Score: 103.219 bits (256), Expect = 7.424e-21
Identity = 67/199 (33.67%), Postives = 100/199 (50.25%), Query Frame = 0
Query:   85 LGIDLGNHKSVVALAQGHGIDVHVNEMGRRETPSAVLLRGRRRHFGDLALAGAGAAPASAVSELRRLLALGLPVDDEDGGRGDGGDESKDVAEVFGAAVVGTGGAEDPCHVGPRVRVEHDGRALTLSARQVLAMFVAHLRKGVEAAHGDDNVLNTVLSVPAWFGRSQRALVVDAARIAGCASPACVTDGTALALGYGLL 283
             G+DLGN+ SV+A+A+  GIDV VNE+  R TPS V    + R+ G+       +   + V  L+R++ L       D    D   ES    E F + +V T    D   +G  VR+   G   T +A Q+ AMF+  ++  V+      N+ +  ++VPAW+   QR  + DAAR+AG      V D TA A+ YG+ 
Sbjct:    5 FGLDLGNNNSVLAVARNRGIDVVVNEVSNRATPSLVGFGPKNRYLGETGKTKETSNVKNTVGNLKRIVGL-------DYAHPDFSTES----EYFTSKLVKT----DDEKIGAEVRLA--GEKHTFNATQLAAMFIGKVKNTVQ-QETKANINDVCVAVPAWYTEEQRYTIADAARVAGLNPVRIVNDVTAAAVSYGVF 185          
The following BLAST results are available for this feature:
BLAST of EWM24828.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106424|gb|EWM24828.1|0.000e+0100.00sse2p [Nannochloropsis gaditana][more]
gi|1159859782|gb|AQZ12974.1|1.706e-2234.63SSE2 (YBR169C) and SSE1 (YPL106C) [Zygosaccharomyc... [more]
gi|1206896719|emb|SJM82060.1|1.722e-2234.63probable Heat shock protein homolog SSE1 [Zygosacc... [more]
gi|523422150|emb|CDF88411.1|1.877e-2234.63BN860_09648g1_1 [Zygosaccharomyces bailii CLIB 213... [more]
gi|578054030|emb|CDH10586.1|2.042e-2234.63probable Heat shock protein homolog SSE1 [Zygosacc... [more]
gi|578050138|emb|CDH14705.1|2.713e-2234.63probable Heat shock protein homolog SSE1 [Zygosacc... [more]
gi|1091706642|emb|SCU91999.1|1.141e-2134.17LAMI_0E08284g1_1 [Lachancea mirantina][more]
gi|1091669392|emb|SCU87219.1|1.294e-2134.63LAME_0D09230g1_1 [Lachancea meyersii CBS 8951][more]
gi|761760129|emb|CEP61990.1|2.804e-2136.00LALA0S04e05226g1_1 [Lachancea lanzarotensis][more]
gi|365986975|ref|XP_003670319.1|7.424e-2133.67hypothetical protein NDAI_0E02590 [Naumovozyma dai... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5858rna5858Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications