EWM24856.1, cds5816 (CDS) Nannochloropsis gaditana

Overview
NameEWM24856.1
Unique Namecds5816
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:952511..952965 -

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Properties
Property NameValue
Start range952511
Start range.
Protein idEWM24856.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101806g1.9588.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:952511..952965 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM24856.1 vs. NCBI_GenBank
Match: gi|585106464|gb|EWM24856.1| (hypothetical protein Naga_101806g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 304.679 bits (779), Expect = 7.551e-105
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0 
Query:    1 MKHGNQGSIRALEAPSYLTHGTSFNDTGFPGAPLFLCVVLLLLHPSLITPFHAPRRHRAPSSSSGPRFPVHPRAVLSSFSSARYLSHPLCSVTDQASSSSSSSSNSNRVQRSELENLTVYELRNACRERGLAVATRARRNEMIDMLGGQVG 151
            MKHGNQGSIRALEAPSYLTHGTSFNDTGFPGAPLFLCVVLLLLHPSLITPFHAPRRHRAPSSSSGPRFPVHPRAVLSSFSSARYLSHPLCSVTDQASSSSSSSSNSNRVQRSELENLTVYELRNACRERGLAVATRARRNEMIDMLGGQVG
Sbjct:    1 MKHGNQGSIRALEAPSYLTHGTSFNDTGFPGAPLFLCVVLLLLHPSLITPFHAPRRHRAPSSSSGPRFPVHPRAVLSSFSSARYLSHPLCSVTDQASSSSSSSSNSNRVQRSELENLTVYELRNACRERGLAVATRARRNEMIDMLGGQVG 151
[Close]
BLAST of EWM24856.1 vs. NCBI_GenBank
Match: gi|553176845|ref|XP_005852409.1| (hypothetical protein NGA_0704200, partial [Nannochloropsis gaditana CCMP526] >gi|422296124|gb|EKU23423.1| hypothetical protein NGA_0704200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 189.504 bits (480), Expect = 1.812e-58
Identity = 115/122 (94.26%), Postives = 118/122 (96.72%), Query Frame = 0 
Query:   29 FPGAPLFLCVVLLLLHPSLITPFHAPRRHRAPSSSSGPRFPVHPRAVLSSFSSARYLSHPLCSVTDQASSSSSSSSNSNRVQRSELENLTVYELRNACRERGLAVATRARRNEMIDMLGGQV 150
            FPGAPLFLCVVLLLLHPSLITPFHAPRRHRAPS SSGPRFPVHPRAVLSSFSSARYL HPLCSVTDQASSSSSSSSNSNRVQR+ELENLT+YELRNACRERGL VATRARRNEMI+ML GQV
Sbjct:    1 FPGAPLFLCVVLLLLHPSLITPFHAPRRHRAPSPSSGPRFPVHPRAVLSSFSSARYLPHPLCSVTDQASSSSSSSSNSNRVQRNELENLTIYELRNACRERGLTVATRARRNEMIEMLRGQV 122
The following BLAST results are available for this feature:
BLAST of EWM24856.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585106464|gb|EWM24856.1|7.551e-105100.00hypothetical protein Naga_101806g1, partial [Nanno... [more]
gi|553176845|ref|XP_005852409.1|1.812e-5894.26hypothetical protein NGA_0704200, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5831rna5831Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications