EWM24864.1, cds5809 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM24864.1
Unique Name	cds5809
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002466.1:937848..938106 -
Alignment location	CM002466.1:937746..937780 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM24864.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_103017g1.9585.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:937848..938106 -
CM002466.1	supercontig	CM002466.1:937746..937780 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

[Close]

BLAST of EWM24864.1 vs. NCBI_GenBank
Match: gi|585106475|gb|EWM24864.1| (hypothetical protein Naga_103017g1 [Nannochloropsis gaditana])

HSP 1 Score: 163.31 bits (412), Expect = 1.524e-50
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0

Query:    1 MKAPSVFGGPSGASTTTAGGSSSSSSSTSAGVAGKASVGTAPMPPLSMKAPSVFGGPSGASATTAGGSSSSSSSSTSAGVAGKASVAKRSSPQAAKQ 97
            MKAPSVFGGPSGASTTTAGGSSSSSSSTSAGVAGKASVGTAPMPPLSMKAPSVFGGPSGASATTAGGSSSSSSSSTSAGVAGKASVAKRSSPQAAKQ
Sbjct:    1 MKAPSVFGGPSGASTTTAGGSSSSSSSTSAGVAGKASVGTAPMPPLSMKAPSVFGGPSGASATTAGGSSSSSSSSTSAGVAGKASVAKRSSPQAAKQ 97

The following BLAST results are available for this feature:

BLAST of EWM24864.1 vs. NCBI_GenBank

BLAST of EWM24864.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585106475\|gb\|EWM24864.1\|	1.524e-50	100.00	hypothetical protein Naga_103017g1 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna5824	rna5824	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications