EWM24875.1, cds5797 (CDS) Nannochloropsis gaditana

Overview
NameEWM24875.1
Unique Namecds5797
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:900765..900978 -
Alignment locationCM002466.1:900501..900658 -
Alignment locationCM002466.1:900260..900346 -
Alignment locationCM002466.1:900104..900198 -
Alignment locationCM002466.1:899435..899813 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24875.1
ProductMethyltransferase FkbM
Orig transcript idgnl|cribi|Naga_100432g2.5738.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:900765..900978 -
CM002466.1supercontigCM002466.1:900501..900658 -
CM002466.1supercontigCM002466.1:900260..900346 -
CM002466.1supercontigCM002466.1:900104..900198 -
CM002466.1supercontigCM002466.1:899435..899813 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
IPR006342FkbM_mtfrase
Homology
BLAST of EWM24875.1 vs. NCBI_GenBank
Match: gi|585106497|gb|EWM24875.1| (Methyltransferase FkbM [Nannochloropsis gaditana])

HSP 1 Score: 638.647 bits (1646), Expect = 0.000e+0
Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0
Query:    1 MLPTSTHLFHRLSQVSRDIAMHGYWEMENMSVLLLLLERARWQRREWRHPESPSRPPRRDELVMLDVGGNLGAYTLCLATAGFRVLTFEAMRRNIQAIREGICRNSGLKERVILLEKGLAEKEETCTLVVDKENIGDGITRCQGQGVSLGSEEVREDAIQVTTLDRALYCPQSSRDAVPSFYTGRPAALKMDVEGFEMLVVQGGQGFLNTSDLAVVLHENGHMPFEKRKYLLEYFVDRGYVFLCPEEMYEWVDGRGGKRGRKRKVPKIEAFAEFDERIFDCWDIAWVKKEDVEVEAPRGGRGQRYWLLLD 310
            MLPTSTHLFHRLSQVSRDIAMHGYWEMENMSVLLLLLERARWQRREWRHPESPSRPPRRDELVMLDVGGNLGAYTLCLATAGFRVLTFEAMRRNIQAIREGICRNSGLKERVILLEKGLAEKEETCTLVVDKENIGDGITRCQGQGVSLGSEEVREDAIQVTTLDRALYCPQSSRDAVPSFYTGRPAALKMDVEGFEMLVVQGGQGFLNTSDLAVVLHENGHMPFEKRKYLLEYFVDRGYVFLCPEEMYEWVDGRGGKRGRKRKVPKIEAFAEFDERIFDCWDIAWVKKEDVEVEAPRGGRGQRYWLLLD
Sbjct:    1 MLPTSTHLFHRLSQVSRDIAMHGYWEMENMSVLLLLLERARWQRREWRHPESPSRPPRRDELVMLDVGGNLGAYTLCLATAGFRVLTFEAMRRNIQAIREGICRNSGLKERVILLEKGLAEKEETCTLVVDKENIGDGITRCQGQGVSLGSEEVREDAIQVTTLDRALYCPQSSRDAVPSFYTGRPAALKMDVEGFEMLVVQGGQGFLNTSDLAVVLHENGHMPFEKRKYLLEYFVDRGYVFLCPEEMYEWVDGRGGKRGRKRKVPKIEAFAEFDERIFDCWDIAWVKKEDVEVEAPRGGRGQRYWLLLD 310          
BLAST of EWM24875.1 vs. NCBI_GenBank
Match: gi|553182892|ref|XP_005853802.1| (methyltransferase family [Nannochloropsis gaditana CCMP526] >gi|422295258|gb|EKU22557.1| methyltransferase family [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 600.512 bits (1547), Expect = 0.000e+0
Identity = 296/321 (92.21%), Postives = 297/321 (92.52%), Query Frame = 0
Query:   14 QVSRDIAMHGYWEMENMSVLLLLLERARWQRREWRHPESPSRPPRRDELVMLDVGGNLGAYTLCLATAGFRVLTFEAMRRNIQAIREGICRNSGLKERVILLEKGLAEKEE------------------------TCTLVVDKENIGDGITRCQGQGVSLGSEEVREDAIQVTTLDRALYCPQSSRDAVPSFYTGRPAALKMDVEGFEMLVVQGGQGFLNTSDLAVVLHENGHMPFEKRKYLLEYFVDRGYVFLCPEEMYEWVDGRGGKRGRKRKVPKIEAFAEFDERIFDCWDIAWVKKEDVEVEAPRGGRGQRYWLLLD 310
            +VSRDIAMHGYWEMENMSVLLLLLERARWQRREWRHPESPSRPPRRDELVMLDVGGNLGAYTLCLATAGFRVLTFEAMRRNIQAIREGICRNSGLKERVILLEKGLAEKEE                        TCTLVVDKENIGDGITRCQGQGVSLGSEEVREDAIQVTTLDRALYCPQSSRDAVPSFYTGRPAALKMDVEGFEMLVVQGGQGFLNTSDLAVVLHENGHMPFEKRKYLLEYFVDRGYVFLCPEEMYEWVDGRGGKRGRKRKVPKIEAFAEFDERIFDCWDIAWVKKEDVEVEAPRGGRGQRYWLLLD
Sbjct:   76 KVSRDIAMHGYWEMENMSVLLLLLERARWQRREWRHPESPSRPPRRDELVMLDVGGNLGAYTLCLATAGFRVLTFEAMRRNIQAIREGICRNSGLKERVILLEKGLAEKEESRPSSLSRTFDFLPVPTAQSSQPQTCTLVVDKENIGDGITRCQGQGVSLGSEEVREDAIQVTTLDRALYCPQSSRDAVPSFYTGRPAALKMDVEGFEMLVVQGGQGFLNTSDLAVVLHENGHMPFEKRKYLLEYFVDRGYVFLCPEEMYEWVDGRGGKRGRKRKVPKIEAFAEFDERIFDCWDIAWVKKEDVEVEAPRGGRGQRYWLLLD 396          
BLAST of EWM24875.1 vs. NCBI_GenBank
Match: gi|585112487|gb|EWM29904.1| (Methyltransferase FkbM [Nannochloropsis gaditana])

HSP 1 Score: 108.227 bits (269), Expect = 2.078e-23
Identity = 71/228 (31.14%), Postives = 112/228 (49.12%), Query Frame = 0
Query:   15 VSRDIAMHGYWEMENMSVLLLLLERARWQRREWRHPESPSRPPRRDELVMLDVGGNLGAYTLCLATAGFRVLTFEAMRRNIQAIREGICRNSGLKERVILLEKGLAEKEETCT-LVVDKENIGDGITRCQGQ-GVSLGSEEVREDAIQVTTLDRALYCPQSSRDAVPSFYTGRPAALKMDVEGFEMLVVQGGQGFLNTSDLAVVLHENGHMPFEKRKYLLEYFVDRGY 240
            VS  I  +G+WE    + L+++L +   + R   H          +++ +LD+GGN+GA+T+    AGF V+TFE + +N   IR  +C N   +ERV L   GL  +   C        N G+GI  C G        + +    ++V  LD  L   +      P    G   A+KMDVEGFE  V++GG+ F   + +  ++ E G MP  +R+ +L++F   GY
Sbjct:  122 VSGAIRSNGHWEHHLSTALVMVLSKVA-EDRGLPH----------EQVHLLDIGGNVGAHTVYAQAAGFSVVTFEPLPQNEAIIRTNLCFNDPKQERVTLFTNGLGSEPTLCKQFSAPNYNRGNGIVNCNGSIPQHPDGQLIYRGQMEVLRLDDVLLPCKDGTQLPPDIVFG---AMKMDVEGFEPEVLKGGETFFTKALIPYIVFEIGRMPETRRQAVLQFFYGLGY 335          
BLAST of EWM24875.1 vs. NCBI_GenBank
Match: gi|403377418|gb|EJY88705.1| (methyltransferase, FkbM family (macronuclear) [Oxytricha trifallax])

HSP 1 Score: 90.1225 bits (222), Expect = 1.235e-16
Identity = 59/208 (28.37%), Postives = 95/208 (45.67%), Query Frame = 0
Query:   12 LSQVSRDIAMHGYWEMENMSVLLLLLERARWQRREWRHPESPSRPPRRDELVMLDVGGNLGAYTLCLATAGFRVLTFEAMRRNIQAIREGICRNSGLKERVILLEKGLAEKEETCTLVVDKENIGDGITRCQGQGVSLGSEEVREDAIQVTTLDRALYCPQSSRDAVPSFYTGRPAALKMDVEGFEMLVVQGGQGFLNTSDLAVVLHE 219
            L  VS  I M   WE     +++  L+  R++ R+               + ++DVG N+G ++L  A+ GF V+ FE    NI   +  I  NSG    + L E GL+ +++TC L     N+ +G  RC  Q    G    +   + +TTLD       S  + +P         +K+D EGFE  +++GG+ FL    +  +L E
Sbjct:  204 LDAVSYHIKMENQWEGIETMLIMQKLQDLRYENRD-------------KVITLIDVGANIGWFSLAAASKGFNVIAFEPFIENINGFKASIQANSGFDYFITLYEVGLSNEDKTCQLYTYDYNMLNGNIRCDDQEFEEGWSRGQ---VNITTLD-------SYVNVIPE--NALIGVMKIDTEGFEYFILKGGEQFLRMHKVRYILME 386          
BLAST of EWM24875.1 vs. NCBI_GenBank
Match: gi|403348513|gb|EJY73693.1| (FkbM family methyltransferase (macronuclear) [Oxytricha trifallax])

HSP 1 Score: 87.4261 bits (215), Expect = 1.896e-16
Identity = 62/211 (29.38%), Postives = 105/211 (49.76%), Query Frame = 0
Query:   12 LSQVSRDIAMHGYWEMENMSVLLLLLERARWQRREWRHPESPSRPPRRDELVMLDVGGNLGAYTLCLATAGFRVLTFEAMRRNIQAIREGICRNSGLKERVILLEKGLAEKE-ETCTLVVDKENIGDGITRCQGQG-VSLGSEEVRE-DAIQVTTLDRALYCPQSSRDAVPSFYTGRPAALKMDVEGFEMLVVQGGQGFLNTSDLAVVLHE 219
            L  VS  I     WE+EN   ++         + +W   E P +     ++ ++DVG N+G ++L  A+ GF VL FE M+ NI+ +R  I +NS  ++ + L+E  L  KE + C +    +NI +G   C+    V + +++ RE   + +  LD       S +    +F+      +K+D EGFEM V++G + FL T  +  +L E
Sbjct:    8 LDAVSYHIREENTWELENTQEIM--------SKLQWLKQEFPGK-----QITLIDVGANIGWFSLVAASKGFHVLAFEPMKENIKIMRANINQNS-FEKYINLVEVALGNKEDQDCLISSPSDNILNGNLYCESTTKVMIPNDQGRERQQLHLKKLDSFTETAASEK----TFF----GVMKIDTEGFEMYVLKGAKNFLLTHRVPFILLE 196          
BLAST of EWM24875.1 vs. NCBI_GenBank
Match: gi|926779956|ref|XP_013898452.1| (hypothetical protein MNEG_8530 [Monoraphidium neglectum] >gi|761968138|gb|KIY99432.1| hypothetical protein MNEG_8530 [Monoraphidium neglectum])

HSP 1 Score: 86.2705 bits (212), Expect = 7.721e-16
Identity = 66/229 (28.82%), Postives = 106/229 (46.29%), Query Frame = 0
Query:   22 HGYWEMENMSVLLLLLERARWQRREWRHPESPSRPPRRDELVMLDVGGNLGAYTLCLATAGFRVLTFEAMRRNIQAIREGICRNSGLKERVILLEKGLAEKEETCTLVVDKENIGDGITRCQGQG--------VSLGSEEVREDAIQVTTLDRALYCPQSSRDAVPSFYTGRPAALKMDVEGFEMLVVQGGQGFLNTSDLAVVLHENGHMPFEK--RKYLLEYFVDRGY 240
            H +   E   +++ L        R+ +HP   +R  +++  +++DVG N+G +TL  A AG RV  FEAM  NIQ +R  +C N GL +RV L   GL  +  TC+++ D  N+GDG T C               G + V    ++V  LD              S        +K+DVEGFE  V++G    L+  ++  +     H   ++  +   L++  D+GY
Sbjct:   19 HQWESQETKEMMVALRSPVPASPRDSKHP---ARWVKKEAPLVVDVGANIGWFTLKAAEAGARVAAFEAMASNIQLVRTSLCANPGLMDRVALYNTGLGTQRATCSIISDVSNMGDGHTICDKDTKDVIKQWKSEFGRDYVVRGEMRVRRLD--------------SLIEEDVQFMKIDVEGFEAEVLKGAAQLLDNHNVWFIAAACNHNKLKEAGKAEYLKFLNDQGY 230          
BLAST of EWM24875.1 vs. NCBI_GenBank
Match: gi|678331459|emb|CDW78597.1| (UNKNOWN [Stylonychia lemnae])

HSP 1 Score: 85.5001 bits (210), Expect = 8.372e-16
Identity = 52/166 (31.33%), Postives = 85/166 (51.20%), Query Frame = 0
Query:   57 PRRDE---LVMLDVGGNLGAYTLCLATAGFRVLTFEAMRRNIQAIREGICRNSGLKERVILLEKGLAEKEETCTLVVDKENIGDGITRCQGQGVSLGSEEVREDAIQVTTLDRALYCPQSSRDAVPSFYTGRPAALKMDVEGFEMLVVQGGQGFLNTSDLAVVLHE 219
            P+ +E   +  +DVGGN+G +TL  A   F V TFE M+ N  A++  +C    LKE+V + E GL ++   C +     NI +G+ +C+ Q  +    E RE  IQ+  LD  +       D +P         +K+D+EG+E  + +GG  F+N   +  ++ E
Sbjct:   34 PKVNEDKRVAFIDVGGNIGWFTLVAARNEFLVYTFEPMKSNTDALKYSLCLQPSLKEKVQIFEYGLGDQNYLCGIYSLDINIQNGLVKCESQFAA--GAEFRE-FIQLKKLDDFI-------DNIPD--DVLIGVMKIDIEGYEYFLFKGGSQFINRYKIPYIIIE 187          
BLAST of EWM24875.1 vs. NCBI_GenBank
Match: gi|552811978|ref|XP_005843604.1| (hypothetical protein CHLNCDRAFT_140178 [Chlorella variabilis] >gi|307103240|gb|EFN51502.1| hypothetical protein CHLNCDRAFT_140178 [Chlorella variabilis])

HSP 1 Score: 84.7297 bits (208), Expect = 2.489e-15
Identity = 59/191 (30.89%), Postives = 89/191 (46.60%), Query Frame = 0
Query:   15 VSRDIAMHGYWEMENMSVLLLLLERARWQRREWRHPESPSRPPRRDELVMLDVGGNLGAYTLCLATAGFRVLTFEAMRRNIQAIREGICRNSGLKERVILLEKGLAEKEETCTLVVDKENIGDGITRCQGQGVSLGSEE-VREDAIQVTTLDRALYCPQSSRDAVPSFYTGRPAAL-------KMDVEGFE 197
            VS  I   G WE      ++  LER  +Q+         +R   ++++  +D+G N+G +T+  A  G+ V+ FEA   N  AIR+ +C N  L++RV L+ KGL++  E C +V   +N+GDG   C      L +   V      + TLD              S+  G   AL       K+DVEGFE
Sbjct:  119 VSSSIEQGGAWEPHETREVVTKLER--FQQ---------ARGLSKEQVYFIDIGANVGYFTVNAAALGYSVIAFEATTPNAFAIRQTLCSNPQLQKRVALVNKGLSDAIERCAVVAASDNVGDGHVECNKDAADLAASGLVVHGQFDLITLD--------------SYVEGHLEALRQKVGVVKIDVEGFE 284          
BLAST of EWM24875.1 vs. NCBI_GenBank
Match: gi|1207924274|ref|XP_021351178.1| (uncharacterized protein LOC110448966 [Mizuhopecten yessoensis] >gi|1205903983|gb|OWF51598.1| hypothetical protein KP79_PYT04615 [Mizuhopecten yessoensis])

HSP 1 Score: 84.7297 bits (208), Expect = 7.447e-15
Identity = 68/219 (31.05%), Postives = 103/219 (47.03%), Query Frame = 0
Query:   61 ELVMLDVGGNLGAYTLCLATAGFRVLTFEAMRRNIQAIREGICRNSGLKERVILLEKGLAEKEETCTLVVDKENIGDGITRCQGQGVSLG-SEEVR---EDAIQVTTLDRALYCPQSSRDAVPSFYTGRPAALKMDVEGFEMLVVQGGQGFLNTSDLAVVLHE-NGHMPFEKRKYLLEYFVDRGYVFLCP--------EEMYEWVDGRGGKRGRKRKVP 266
            + V+LD+G N+G YTL  A  GF+V+  E ++ N+Q I + + R     E V ++   L+   +   L +   NIG G    QG+ ++   S  VR    D I  T LD  +         +P+F +G+   +KMDVEG+E  V+ GG  F +  D+  VL E   H      K +L +F +R Y+   P        +  YEW         +KRK P
Sbjct:  177 DAVLLDIGANIGVYTLTAAKLGFKVIAVEPLKINVQRICKSL-RAGNFTENVTVVRSALSNVLQKVNLGIVINNIG-GSYVLQGKNINKAKSTLVRGKYPDVIWTTRLDDIM--------QLPAFDSGK-VIIKMDVEGYENKVLSGGVHFFDRMDVPTVLMEWTYHRKAMSGKEILTFFENRNYIAYAPVKNIQLDLKRSYEW---PADILWKKRKTP 381          
BLAST of EWM24875.1 vs. NCBI_GenBank
Match: gi|1027023874|ref|XP_016604665.1| (FkbM family methyltransferase [Spizellomyces punctatus DAOM BR117] >gi|907090137|gb|KNC96625.1| FkbM family methyltransferase [Spizellomyces punctatus DAOM BR117])

HSP 1 Score: 84.3445 bits (207), Expect = 7.814e-15
Identity = 55/156 (35.26%), Postives = 78/156 (50.00%), Query Frame = 0
Query:   59 RDELVMLDVGGNLGAYTLCLATAGFRVLTFEAMRRNIQAIREGICRNSGLKERVILLEKGLAEKEETCTLVVDKENIGDGITRCQGQGVSLGSEE--VREDAIQVTTLDRALYCPQSSRDAVPSFYTGRPAALKMDVEGFEMLVVQGGQGFLNTSD 212
            +D    LD+GGN+G YT+  A  G RV  FE M +N   IR  +C N  L   V     GL  + + C ++   EN G+GI +C        +++  VR D + + TLD  +   Q  R A      G    +KMDVEGFE  V++GG+  L  +D
Sbjct:  133 QDRATFLDIGGNVGWYTVTAAAHGHRVAVFEPMPQNEYLIRRSLCANRDLARHVDYYAMGLGAQPDECRIISHNENHGNGILQCGEDSKKPVADQHGVRAD-VSIHTLDGIV---QDDRRA------GEFGVMKMDVEGFESEVLKGGEKSLFATD 278          
The following BLAST results are available for this feature:
BLAST of EWM24875.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106497|gb|EWM24875.1|0.000e+0100.00Methyltransferase FkbM [Nannochloropsis gaditana][more]
gi|553182892|ref|XP_005853802.1|0.000e+092.21methyltransferase family [Nannochloropsis gaditana... [more]
gi|585112487|gb|EWM29904.1|2.078e-2331.14Methyltransferase FkbM [Nannochloropsis gaditana][more]
gi|403377418|gb|EJY88705.1|1.235e-1628.37methyltransferase, FkbM family (macronuclear) [Oxy... [more]
gi|403348513|gb|EJY73693.1|1.896e-1629.38FkbM family methyltransferase (macronuclear) [Oxyt... [more]
gi|926779956|ref|XP_013898452.1|7.721e-1628.82hypothetical protein MNEG_8530 [Monoraphidium negl... [more]
gi|678331459|emb|CDW78597.1|8.372e-1631.33UNKNOWN [Stylonychia lemnae][more]
gi|552811978|ref|XP_005843604.1|2.489e-1530.89hypothetical protein CHLNCDRAFT_140178 [Chlorella ... [more]
gi|1207924274|ref|XP_021351178.1|7.447e-1531.05uncharacterized protein LOC110448966 [Mizuhopecten... [more]
gi|1027023874|ref|XP_016604665.1|7.814e-1535.26FkbM family methyltransferase [Spizellomyces punct... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5812rna5812Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications