EWM24880.1, cds5791 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24880.1 vs. NCBI_GenBank
Match: gi|585106505|gb|EWM24880.1| (hypothetical protein Naga_100265g6 [Nannochloropsis gaditana]) HSP 1 Score: 992.26 bits (2564), Expect = 0.000e+0 Identity = 505/505 (100.00%), Postives = 505/505 (100.00%), Query Frame = 0 Query: 1 MSFSFGGSSSGTGTNDPNAGAPKPGAFSFSQPGVPTPASGFNVSNAGTAPATPGFGGFGSTVKTPDTSNRASTAFGSTSTGDANIPSKPASAGLFGGGSTTFSSPTPSISGAVAPATAPVGGIVANPFSMAPAPTPSSGFGALTTPSPFATTSTPAPAPTSNAVFGGSTHATGTPASNANNFGVGASTTSASTGGGFQFGNQAAPAPAPSTTFSTPASSTSGFGSGSMFGTRHATGALPAFGASTGTTQASDQAPPSAAAPRASTPAPPPASSSLFGSAPSATTSLPGSASLFGSTVWGLGKSVATDPAVFEREFGAYKLSELIKLFQGGVEDDLEVCEVQNEAVREGDERTATAQEVTRVLDAAVADLSAAWGELDAGLSYVEGKQAALETDMAGLEKSLAVLLEGDVALDGADLERMDLYDLLQGMDAELNMLLRRVTREAGRVGGIYERHISPPDAENPMGIFLRLTNDHQHALEWLQRTARQVEDAAMQCEMEMTATGTQK 505 MSFSFGGSSSGTGTNDPNAGAPKPGAFSFSQPGVPTPASGFNVSNAGTAPATPGFGGFGSTVKTPDTSNRASTAFGSTSTGDANIPSKPASAGLFGGGSTTFSSPTPSISGAVAPATAPVGGIVANPFSMAPAPTPSSGFGALTTPSPFATTSTPAPAPTSNAVFGGSTHATGTPASNANNFGVGASTTSASTGGGFQFGNQAAPAPAPSTTFSTPASSTSGFGSGSMFGTRHATGALPAFGASTGTTQASDQAPPSAAAPRASTPAPPPASSSLFGSAPSATTSLPGSASLFGSTVWGLGKSVATDPAVFEREFGAYKLSELIKLFQGGVEDDLEVCEVQNEAVREGDERTATAQEVTRVLDAAVADLSAAWGELDAGLSYVEGKQAALETDMAGLEKSLAVLLEGDVALDGADLERMDLYDLLQGMDAELNMLLRRVTREAGRVGGIYERHISPPDAENPMGIFLRLTNDHQHALEWLQRTARQVEDAAMQCEMEMTATGTQK Sbjct: 1 MSFSFGGSSSGTGTNDPNAGAPKPGAFSFSQPGVPTPASGFNVSNAGTAPATPGFGGFGSTVKTPDTSNRASTAFGSTSTGDANIPSKPASAGLFGGGSTTFSSPTPSISGAVAPATAPVGGIVANPFSMAPAPTPSSGFGALTTPSPFATTSTPAPAPTSNAVFGGSTHATGTPASNANNFGVGASTTSASTGGGFQFGNQAAPAPAPSTTFSTPASSTSGFGSGSMFGTRHATGALPAFGASTGTTQASDQAPPSAAAPRASTPAPPPASSSLFGSAPSATTSLPGSASLFGSTVWGLGKSVATDPAVFEREFGAYKLSELIKLFQGGVEDDLEVCEVQNEAVREGDERTATAQEVTRVLDAAVADLSAAWGELDAGLSYVEGKQAALETDMAGLEKSLAVLLEGDVALDGADLERMDLYDLLQGMDAELNMLLRRVTREAGRVGGIYERHISPPDAENPMGIFLRLTNDHQHALEWLQRTARQVEDAAMQCEMEMTATGTQK 505
BLAST of EWM24880.1 vs. NCBI_GenBank
Match: gi|507577488|ref|XP_004672270.1| (PREDICTED: nuclear pore glycoprotein p62 [Jaculus jaculus]) HSP 1 Score: 70.8626 bits (172), Expect = 2.216e-9 Identity = 72/292 (24.66%), Postives = 130/292 (44.52%), Query Frame = 0 Query: 212 TFSTPASSTSGFGSGSMFGTRHATGALPAFGASTGTTQASDQAPPSAAAPRASTPAPPPASSSLFGSAPSATTSLPGSASLFGSTVWGLGKSVATDPAVFEREFGAYKLSELIKLFQGGVEDDLEVCEVQNEAVREGDERTATAQEVTRV-LDAAVADLSAAWGELDAGLSYVEGKQAALETDMAGLEKSLAVLLEGDVALDGADLERMDLYDLLQGMDAELNML---LRRVTREAGRVGGIYERHISPPDAENPMGIFLRLTNDHQHALEWLQRTA----RQVEDAAMQCE 495 + STPAS+ + G+G++ + A G + + TT A+ A + + PA P+S++ G+ PS T+++ G+ + S A E + L EL + ++ +V + G++ T+ +EV +V LD LD L ++ +Q LE ++ LE+S+ G + L AD ER Y L + +DA+L + L+ + GG P D +P+ ++ N H +L+W+ + + R+VE+A+ CE Sbjct: 247 SLSTPASTAAAPGAGTLGFSLKAPGQAASTSTAATTTSATSTTTSFALSLKPLVPAGIPSSTAATGTTPSGTSAVAGTTA-----------SPTMTYAQLESLINKWSL-ELEDQERHFLQQATQVNAWDRTLIENGEKITSLHREVEKVKLDQK---------RLDQELDFILSQQKELEDLLSPLEESVKE-QSGTIYLQHADEEREKTYKLAENIDAQLKRMAQDLKDIIEHLNTTGG-------PADTSDPLQQICKILNAHMDSLQWIDQNSALLQRKVEEASRVCE 509
BLAST of EWM24880.1 vs. NCBI_GenBank
Match: gi|524969899|ref|XP_005084819.1| (nuclear pore glycoprotein p62 [Mesocricetus auratus] >gi|880958540|ref|XP_012979642.1| nuclear pore glycoprotein p62 [Mesocricetus auratus]) HSP 1 Score: 70.8626 bits (172), Expect = 2.344e-9 Identity = 76/296 (25.68%), Postives = 125/296 (42.23%), Query Frame = 0 Query: 208 APSTTFSTPASSTSGFGSGSMFGTRHATGALPAFGASTGTTQASDQAPPSAAAPRASTPAPPPASSSLFGSAPSATTSLPGSASLFGSTVWGLGKSVATDPAVFEREFGAY-KLSELIKLFQGGVEDDLEVCEVQNEAVREGDERTATAQEVTRVLDAAVADLSAAWGELDAGLSYVEGKQAALETDMAGLEKSLAVLLEGDVALDGADLERMDLYDLLQGMDAELNML---LRRVTREAGRVGGIYERHISPPDAENPMGIFLRLTNDHQHALEWLQRTA----RQVEDAAMQCE 495 AP TT +TP++ T GF + A GA P + T+ + + + + P P SSS+ + T+LPGS++ G+T T PA+ Y +L LI + +ED Q V D E L V + LD L ++ +Q LE ++ LE+S+ G + L AD ER + L + +DA+L + L+ + GG P D +P+ ++ N H +L+W+ +++ R+VE+A+ CE Sbjct: 241 APVTTAATPSAGTLGF-------SLKAPGAAPGTSTTNTTSTTTTTSTTTTGFALSLKPLVPTGSSSV----ATTGTALPGSSTAAGTT---------TGPAM------TYAQLESLINKWSLELEDQERHFLQQATQVNAWDRTLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEESVKEQ-SGTIYLQHADEEREKTFKLAENIDAQLKRMAQDLKDIIEHLNMAGG-------PADTSDPLQQICKILNAHMDSLQWVDQSSALLQRRVEEASRVCE 502
BLAST of EWM24880.1 vs. NCBI_GenBank
Match: gi|857977845|emb|CEO96394.1| (hypothetical protein PBRA_005065 [Plasmodiophora brassicae]) HSP 1 Score: 70.4774 bits (171), Expect = 3.375e-9 Identity = 41/199 (20.60%), Postives = 86/199 (43.22%), Query Frame = 0 Query: 308 PAVFEREFGAYKLSELIKLFQGGVEDDLEVCEVQNEAVREGDERTATAQEVTRVLDAAVADLSAAWGELDAGLSYVEGKQAALETDMAGLEKSLAVLLEGDVALDGADLERMDLYDLLQGMDAELNMLLRRVTREAGRVGGIYERHI--SPPD--AENPMGIFLRLTNDHQHALEWLQRTARQVEDAAMQCE-MEMTAT 501 PA + E+I +++ +E+ + Q V D + E L V D+ AA +L L ++ + LE+ + LE+ L L+ D G +++R + Y + + +L+ L + V ++ E I +P + A +PM +++ N H +L+++ +++ Q + ++ AT Sbjct: 542 PAAKTVRLSRKNVKEIIDIWKDELEERVRSFTDQAHKVSAWDRQLIANGEQIIALKRQVGDVDAAQNQLKTALDKIKIDEDELESMVCQLERDLEESLKLDAKSSGPEVKRGETYMKAEKLSCDLSNLSQSVAETVQKLNEASETTIAAAPSNGPASDPMSAVVKILNVHMASLKYIDAEIANLDNKMQQLQRLQQKAT 740
BLAST of EWM24880.1 vs. NCBI_GenBank
Match: gi|589103047|ref|XP_006963546.1| (predicted protein [Trichoderma reesei QM6a] >gi|340519978|gb|EGR50215.1| predicted protein [Trichoderma reesei QM6a]) HSP 1 Score: 70.0922 bits (170), Expect = 4.252e-9 Identity = 149/583 (25.56%), Postives = 225/583 (38.59%), Query Frame = 0 Query: 1 MSFSFGG-SSSGTGTNDPNAGAPKPG------------AFSFSQPGVP--TPASGF--NVSNAGTAPATPGFGGFGSTVKTPDTSNRASTAFGSTSTGDANIPSKPASAGLFGGGSTTFSSPTPSISGAVAPATAPVGGIV---ANPFSMAPAPTPSSGFGALTTPSPFATTSTPAPAPTSNAVFGGSTHATGTPASNANNFGVG--ASTTSASTGGGFQFGNQAAPAPAPSTTFSTPASSTSGFGSGSMFGTRHA----------------------------TGALPAFGASTGTTQASDQAPPSAAAPRASTPAPPPASSSLFGSAP---SATTSLPGSASLFGS-------------------------------TVWGLGKSVATDPAVFEREFGAYKLSELIKLFQGGVEDDLEVCEVQNEAVREGDERTATAQEVTRVLDAAVADLSAAWGELDAGLSYVEGKQAALETDMAGLEKSLAVLLEGDVA----LDGADLERMDLYDLLQGMDAELNMLLRRVTREAGRVGGIYERHISPPDAENPMGIFLRLTNDHQHALEWL--QRTARQVEDAAMQ 493 MSFSFG SSSG +N+ + AP G FSF P P G SNA PA+ G G + + + A FG ST PA+ GLFGG ST SS + G +TAP G +N F + TP+ G T P ATTS P + G +GT +S + FG A+T+S + G FGN+ A A S + STPA++ + + ++FGT+ A +G+ PA A+ G + ++TPA S +LFG+AP +ATT P + SLFG+ T+ LG S P+ R + +++ + + + + Q V D E + L + A E++ L+ VE +Q LE + E + + + L G D ER Y L + + +L+ R +++ + I AE+P+ +R+ N H L+W+ +A Q + AA Q Sbjct: 1 MSFSFGTPSSSGAASNNTTSTAPATGGLFGTAAASGTPKFSFGNTTTPATNPPGGLFGGQSNAAQKPASGGLFGSAAASSSSTPTTSAGGLFGGAST-------TPATGGLFGGTSTATSSSGGGLFGGATTSTAPSTGAKTAGSNLFGTNTSTTPAGGLFGNTATKP-ATTSASTSQPATTTTSGSGLFGSGTQSSTSGLFGAAKPAATSSTAPASGGLFGNKTATTSAQSGS-STPAATPAAGTTSTLFGTKPAATTTSTTPAATSAGGLFGTTPAATTAPASGSTPATAAAGGLFGLKPAGTTATTTSSSTTPATTATSGNLFGTAPKASTATTDKPAT-SLFGTTATTKPATTASTTATTTTAAPASTTTTAGGFTINPLGASTTGPPSQMAR-LKNKTMEDIVTRWASDLSKYQKQFKEQATIVSNWDRNLVDNGEKIQKLYLETFEAERASHEIERQLAAVESQQEELEAWLNRYESEVQDMFAKQMGPGEQLGGPDQERERTYKLAEKLTQQLDEKSRDLSKMVKEINDISGTLSKGAKAEDPLSQIVRVLNSHLTQLQWIDANSSALQAKVAAAQ 572
BLAST of EWM24880.1 vs. NCBI_GenBank
Match: gi|354497648|ref|XP_003510931.1| (PREDICTED: nuclear pore glycoprotein p62 [Cricetulus griseus] >gi|625219100|ref|XP_007649660.1| PREDICTED: nuclear pore glycoprotein p62 [Cricetulus griseus] >gi|625263888|ref|XP_007623384.1| PREDICTED: nuclear pore glycoprotein p62 [Cricetulus griseus] >gi|1032916708|ref|XP_016835387.1| PREDICTED: nuclear pore glycoprotein p62 [Cricetulus griseus] >gi|1032947067|ref|XP_016824986.1| PREDICTED: nuclear pore glycoprotein p62 [Cricetulus griseus] >gi|344257331|gb|EGW13435.1| Nuclear pore glycoprotein p62 [Cricetulus griseus] >gi|537146697|gb|ERE70139.1| nuclear pore glycoprotein [Cricetulus griseus]) HSP 1 Score: 68.9366 bits (167), Expect = 8.245e-9 Identity = 77/296 (26.01%), Postives = 128/296 (43.24%), Query Frame = 0 Query: 208 APSTTFSTPASSTSGFGSGSMFGTRHATGALPAFGASTGTTQASDQAPPSAAAPRASTPAPPPASSSLFGSAPSATTSLPGSASLFGSTVWGLGKSVATDPAVFEREFGAYKLSELIKLFQGGVEDDLEVCEVQNEAVREGDERTATAQEVTRV-LDAAVADLSAAWGELDAGLSYVEGKQAALETDMAGLEKSLAVLLEGDVALDGADLERMDLYDLLQGMDAELNML---LRRVTREAGRVGGIYERHISPPDAENPMGIFLRLTNDHQHALEWLQRTA----RQVEDAAMQCE 495 AP TT +TP++ T GF + A GA P ++ T+ S + + + P P SSS+ + T LPGS ST G A A E + L EL + ++ +V + G++ T+ +EV +V LD LD L ++ +Q LE ++ LE+S+ G + L AD ER + L + +DA+L + L+ + GG P D +P+ ++ N H +L+W+ +++ R+VE+A+ CE Sbjct: 245 APVTTAATPSAGTLGF-------SLKAPGAAPGTSTTSTTSTTSTASTTTTGFALSLKPLVPTGSSSVAATG----TPLPGS-----STAAGTSTGPAMTYAQLESLINKWSL-ELEDQERHFLQQATQVNAWDRTLIENGEKITSLHREVEKVKLDQK---------RLDQELDFILSQQKELEDLLSPLEESVKE-QSGTIYLQHADEEREKTFKLAENIDAQLKRMAQDLKDIIEHLNMAGG-------PADTSDPLQQICKILNAHMDSLQWVDQSSALLQRRVEEASRVCE 506
BLAST of EWM24880.1 vs. NCBI_GenBank
Match: gi|589947194|ref|XP_006986271.1| (PREDICTED: nuclear pore glycoprotein p62 [Peromyscus maniculatus bairdii]) HSP 1 Score: 68.1662 bits (165), Expect = 1.707e-8 Identity = 46/184 (25.00%), Postives = 78/184 (42.39%), Query Frame = 0 Query: 319 KLSELIKLFQGGVEDDLEVCEVQNEAVREGDERTATAQEVTRVLDAAVADLSAAWGELDAGLSYVEGKQAALETDMAGLEKSLAVLLEGDVALDGADLERMDLYDLLQGMDAELNML---LRRVTREAGRVGGIYERHISPPDAENPMGIFLRLTNDHQHALEWLQRTA----RQVEDAAMQCE 495 +L LI + +ED Q V D E L V + LD L ++ +Q LE ++ LE+S+ G + L AD ER + L + +DA+L + L+ + GG P D +P+ ++ N H +L+W+ +++ R+VE+A+ CE Sbjct: 330 QLESLINKWSLELEDQERHFLQQATQVNAWDRTLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEESVKEQ-SGTIYLQHADEEREKTFKLAENIDAQLKRMAQDLKDIIEHLNMAGG-------PADTSDPLQQICKILNAHMDSLQWVDQSSALLQRRVEEASRVCE 505
BLAST of EWM24880.1 vs. NCBI_GenBank
Match: gi|1102539992|ref|XP_019045647.1| (hypothetical protein I302_06038 [Kwoniella bestiolae CBS 10118] >gi|1045430228|gb|OCF24577.1| hypothetical protein I302_06038 [Kwoniella bestiolae CBS 10118]) HSP 1 Score: 67.3958 bits (163), Expect = 3.725e-8 Identity = 83/340 (24.41%), Postives = 135/340 (39.71%), Query Frame = 0 Query: 195 GGFQFGNQAAPAPAPSTTFSTPASSTSGFGSGSMFGTRHATGALPAFGASTGTTQASDQAPPSAAAPRASTPAPPPASSSLFGSA----PSATTSLPGSASLFGSTVWGLGKSVATDPAVFEREFGAYKLSELIKLFQGGVEDDLEVCEVQNEAVREGDERTATAQEVTRVLDAAVADLSAAWGELDAGLSYVEGKQAALETDMAGLEKSLAVLLEGDV----ALDGADLERMDLYDLLQGMDAELNMLLRRVTREAGRV-------------GGIYERHISPPDA----------ENPMGIFLRLTNDHQHALEWLQRTARQVEDAAMQCEMEMTATGT 503 GGF FGN + + AP STPA++ S+FG GA P A P AST AP PA+ SLFG+ P+A+TS P + S +T + +++PA L +++ + ++ ++ E Q V+E D+ L V + +D L Y+E +Q LE+ M+ EK ++ L A AD ER Y L + ++ +L+ L R +++ V G S P A ++P+ + H AL + A ++E+ + E M +G+ Sbjct: 473 GGFSFGNLSGASTAPKPAESTPAATAGS----SLFG-----------GA------------PKPAEPAASTNAPAPATGSLFGAKPAGTPAASTSTPAAGSTSTTTAPAPAAATSSEPA--PNLLRGKTLEDIVDGWNKDLDAQVKEFEKQAGEVKEWDKVLVRNGNQITALHRQVLEAQQNQSAVDQALDYIEAQQKQLESIMSVYEKEISKLGNDSTRPLAAKLPADREREKSYTLAEDLNKQLDDLSRNLSQMIEEVNKLSTTTSSNNGNGSFGLDSTSTPSAATVDSSSQIPDDPINQLSAILGAHLRALSSIDSNAGRLENKVGELEGRMGGSGS 783
BLAST of EWM24880.1 vs. NCBI_GenBank
Match: gi|511895381|ref|XP_004767299.1| (PREDICTED: nuclear pore glycoprotein p62 [Mustela putorius furo]) HSP 1 Score: 65.4698 bits (158), Expect = 1.172e-7 Identity = 47/184 (25.54%), Postives = 75/184 (40.76%), Query Frame = 0 Query: 319 KLSELIKLFQGGVEDDLEVCEVQNEAVREGDERTATAQEVTRVLDAAVADLSAAWGELDAGLSYVEGKQAALETDMAGLEKSLAVLLEGDVALDGADLERMDLYDLLQGMDAELNML---LRRVTREAGRVGGIYERHISPPDAENPMGIFLRLTNDHQHALEWLQRTA----RQVEDAAMQCE 495 +L LI + +ED Q V D E L V + LD L ++ +Q LE ++ LE+S+ G V L AD ER Y L + +DA+L + L+ + GG P D +P+ ++ N H +L+W+ + + R+VE+ CE Sbjct: 337 QLESLINKWSLELEDQERHFLQQATQVNAWDRTLIENGEKITTLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEESVKEQ-SGTVYLQHADEERERTYKLAENIDAQLKRMAQDLKDIIEHLNTSGG-------PADTSDPLQQICKILNAHMDSLQWVDQNSALLQRKVEEVTKVCE 512
BLAST of EWM24880.1 vs. NCBI_GenBank
Match: gi|1173945402|gb|OQR94030.1| (nuclear pore glycoprotein [Thraustotheca clavata]) HSP 1 Score: 63.929 bits (154), Expect = 4.630e-7 Identity = 46/177 (25.99%), Postives = 80/177 (45.20%), Query Frame = 0 Query: 314 EFGAYKLSELIKLFQGGVEDDLEVCEVQNEAVREGDERTATAQEVTRVLDAA--VADLSAAWGELDAGLSYVEGKQAALETDMAGLEKSLAVLLEGDVAL-DGADLERMDLYDLLQGMDAELNMLLRRVTREAGRVGGIYERHISPPDAENPMGIFLRLTNDHQHALEWLQRTARQV 487 E+ + ++I ++ +E+ NEAVR T + ++ D A V L A EL+A L + Q L++ + LE S+ L E + D AD+ER L +D +LNM+ + R+ + D++NPM L++ N H ++L W+ A ++ Sbjct: 1289 EYLGKTVEDIINMWSEQLEN--HAMAFTNEAVRVSHWDTELMENQKKLGDLAIDVRRLQMAQKELNANLDTISAYQMELDSTLENLESSVDKLFESHRQIPDTADIEREQGLQLSVDIDNQLNMMSTALKETIDRLNASQSQQ---DDSDNPMAQILKVLNVHHNSLVWIDGNATKL 1460 The following BLAST results are available for this feature:
BLAST of EWM24880.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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