EWM24897.1, cds5784 (CDS) Nannochloropsis gaditana

Overview
NameEWM24897.1
Unique Namecds5784
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:866129..866200 +
Alignment locationCM002466.1:866314..866441 +
Alignment locationCM002466.1:866834..866931 +
Alignment locationCM002466.1:867024..867223 +
Alignment locationCM002466.1:867434..867603 +
Alignment locationCM002466.1:867778..867925 +
Alignment locationCM002466.1:868058..868132 +
Alignment locationCM002466.1:868391..868535 +
Alignment locationCM002466.1:868685..868761 +
Alignment locationCM002466.1:868957..869072 +
Alignment locationCM002466.1:869279..869363 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24897.1
ProductATPase, AAA-type, core
Orig transcript idgnl|cribi|Naga_100116g4.9025.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:866129..866200 +
CM002466.1supercontigCM002466.1:866314..866441 +
CM002466.1supercontigCM002466.1:866834..866931 +
CM002466.1supercontigCM002466.1:867024..867223 +
CM002466.1supercontigCM002466.1:867434..867603 +
CM002466.1supercontigCM002466.1:867778..867925 +
CM002466.1supercontigCM002466.1:868058..868132 +
CM002466.1supercontigCM002466.1:868391..868535 +
CM002466.1supercontigCM002466.1:868685..868761 +
CM002466.1supercontigCM002466.1:868957..869072 +
CM002466.1supercontigCM002466.1:869279..869363 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0030163protein catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
GO:0000166nucleotide binding
GO:0016787hydrolase activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR003960ATPase_AAA_CS
IPR00593726S_Psome_P45
IPR027417P-loop_NTPase
IPR003959ATPase_AAA_core
IPR003593AAA+_ATPase
Homology
BLAST of EWM24897.1 vs. NCBI_GenBank
Match: gi|585106524|gb|EWM24897.1| (ATPase, AAA-type, core [Nannochloropsis gaditana])

HSP 1 Score: 903.664 bits (2334), Expect = 0.000e+0
Identity = 437/437 (100.00%), Postives = 437/437 (100.00%), Query Frame = 0
Query:    1 MASVAVATRTPGLMDMDVDSGAGKEEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQEKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQEAGLQAVRKNRYVILARDFDEAYKKHVTKADKEHWFYSMTRCSRHLSPPRVHATNGVLPESTLTLE 437
            MASVAVATRTPGLMDMDVDSGAGKEEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQEKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQEAGLQAVRKNRYVILARDFDEAYKKHVTKADKEHWFYSMTRCSRHLSPPRVHATNGVLPESTLTLE
Sbjct:    1 MASVAVATRTPGLMDMDVDSGAGKEEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQEKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQEAGLQAVRKNRYVILARDFDEAYKKHVTKADKEHWFYSMTRCSRHLSPPRVHATNGVLPESTLTLE 437          
BLAST of EWM24897.1 vs. NCBI_GenBank
Match: gi|585106525|gb|EWM24898.1| (ATPase, AAA-type, core [Nannochloropsis gaditana])

HSP 1 Score: 845.114 bits (2182), Expect = 0.000e+0
Identity = 410/410 (100.00%), Postives = 410/410 (100.00%), Query Frame = 0
Query:    1 MASVAVATRTPGLMDMDVDSGAGKEEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQEKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQEAGLQAVRKNRYVILARDFDEAYKKHVTKADKEHWFYSM 410
            MASVAVATRTPGLMDMDVDSGAGKEEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQEKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQEAGLQAVRKNRYVILARDFDEAYKKHVTKADKEHWFYSM
Sbjct:    1 MASVAVATRTPGLMDMDVDSGAGKEEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQEKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQEAGLQAVRKNRYVILARDFDEAYKKHVTKADKEHWFYSM 410          
BLAST of EWM24897.1 vs. NCBI_GenBank
Match: gi|553189471|ref|XP_005855008.1| (26S proteasome regulatory subunit T3 [Nannochloropsis gaditana CCMP526] >gi|422294048|gb|EKU21348.1| 26S proteasome regulatory subunit T3 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 840.106 bits (2169), Expect = 0.000e+0
Identity = 410/411 (99.76%), Postives = 410/411 (99.76%), Query Frame = 0
Query:    1 MASVAVATRTPGLMDMDVDSGAGK-EEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQEKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQEAGLQAVRKNRYVILARDFDEAYKKHVTKADKEHWFYSM 410
            MASVAVATRTPGLMDMDVDSGAGK EEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQEKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQEAGLQAVRKNRYVILARDFDEAYKKHVTKADKEHWFYSM
Sbjct:    1 MASVAVATRTPGLMDMDVDSGAGKQEEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQEKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQEAGLQAVRKNRYVILARDFDEAYKKHVTKADKEHWFYSM 411          
BLAST of EWM24897.1 vs. NCBI_GenBank
Match: gi|585106526|gb|EWM24899.1| (ATPase, AAA-type, core [Nannochloropsis gaditana])

HSP 1 Score: 756.133 bits (1951), Expect = 0.000e+0
Identity = 371/372 (99.73%), Postives = 371/372 (99.73%), Query Frame = 0
Query:    1 MASVAVATRTPGLMDMDVDSGAGK-EEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQEKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQ 371
            MASVAVATRTPGLMDMDVDSGAGK EEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQEKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQ
Sbjct:    1 MASVAVATRTPGLMDMDVDSGAGKQEEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQEKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQ 372          
BLAST of EWM24897.1 vs. NCBI_GenBank
Match: gi|298714687|emb|CBJ27612.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 712.99 bits (1839), Expect = 0.000e+0
Identity = 346/410 (84.39%), Postives = 374/410 (91.22%), Query Frame = 0
Query:   13 LMDMDVDS----GAGKEEEQQEED--------LYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQEKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQEAGLQAVRKNRYVILARDFDEAYKKHVTKADKEHWFYSM 410
            +M M VD+     AGKE + Q           +Y +LK LQ+ +EF+DIQEEYIKDEMKNLKRELIRAKEE+KRIQSVPLVIGQFNE+IDA+YGIVGSTAGS Y+VRILSTLDRE LKPN SVALHRHSHSVV+ILPPESDSTIQLMQE+PDV+Y+DIGGMD+QKQEVKEAVELPLTHF+LYKQIGIDPPRGVLMYGPPGTGKTMMAKAVA AT+ASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPS+VFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFP PDRRQKRMVF ACTAKMNL ++VDLEDYVNRPEK+SAAD++AIAQEAGLQAVRKNRYV+L +D D+AYKKHV K D EH FYSM
Sbjct:    6 VMAMPVDTPTGDAAGKERQHQAAADDAGAAQDVYVKLKSLQKHMEFLDIQEEYIKDEMKNLKRELIRAKEEIKRIQSVPLVIGQFNEIIDANYGIVGSTAGSNYFVRILSTLDREVLKPNTSVALHRHSHSVVEILPPESDSTIQLMQERPDVTYHDIGGMDMQKQEVKEAVELPLTHFDLYKQIGIDPPRGVLMYGPPGTGKTMMAKAVANATSASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSVVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPVPDRRQKRMVFTACTAKMNLSEEVDLEDYVNRPEKVSAADISAIAQEAGLQAVRKNRYVVLGKDLDKAYKKHVNKHDTEHAFYSM 415          
BLAST of EWM24897.1 vs. NCBI_GenBank
Match: gi|698825135|ref|XP_009845596.1| (26S protease regulatory subunit 6B [Aphanomyces astaci] >gi|574099274|gb|ETV64899.1| 26S protease regulatory subunit 6B [Aphanomyces astaci])

HSP 1 Score: 687.182 bits (1772), Expect = 0.000e+0
Identity = 327/386 (84.72%), Postives = 361/386 (93.52%), Query Frame = 0
Query:   25 EEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQ--EKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQEAGLQAVRKNRYVILARDFDEAYKKHVTKADKEHWFY 408
            E+++QE+D++++ K L+R LEF+DIQE YIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQF EM+DA+YGIVGSTAGS YYVRILSTLDRE+LKPN SVALHRHSH+VV ILPPESDS+IQ+MQ  E+PDVSY+DIGGMDIQKQEV+EAVELPLTHF+LYKQIGIDPPRGVLMYGPPGTGKTM+AKAVA ATTASFI VVGSEFVQKYLGEGPRMVRDVFRLA+ENSP IVFIDE+DAIATKRFDAQTGADREVQRILLELLNQMDGFDQ+TNVKVIMATNRADTLDPALLRPGRLDRKIEFP PDRRQKR+++QACTAKMNLGD+VDLEDYVNRPEKIS AD+A+I QEAGLQAVRKNRYVIL +DFD+ YK  + +AD    FY
Sbjct:   20 EKQEQEDDMFSKFKTLERHLEFLDIQEGYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFLEMVDANYGIVGSTAGSNYYVRILSTLDRERLKPNSSVALHRHSHAVVAILPPESDSSIQMMQMEERPDVSYSDIGGMDIQKQEVREAVELPLTHFDLYKQIGIDPPRGVLMYGPPGTGKTMLAKAVANATTASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPCIVFIDEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDQATNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIYQACTAKMNLGDEVDLEDYVNRPEKISCADIASICQEAGLQAVRKNRYVILPKDFDKGYKNAIKRADTTFEFY 405          
BLAST of EWM24897.1 vs. NCBI_GenBank
Match: gi|1173941746|gb|OQR90853.1| (26S protease regulatory subunit 6B [Thraustotheca clavata])

HSP 1 Score: 685.256 bits (1767), Expect = 0.000e+0
Identity = 323/384 (84.11%), Postives = 361/384 (94.01%), Query Frame = 0
Query:   27 EQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQ--EKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQEAGLQAVRKNRYVILARDFDEAYKKHVTKADKEHWFY 408
            ++QE+D++++ K LQR LEF+DIQE YIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQF EM+DA+YGIVGSTAGS YYVRILSTLDRE+LKPN SVALHRHSH+VV ILPPESDS+IQ+MQ  E+PDVSY+DIGGMD+QKQEV+EAVELPLTHF+LYKQIG+DPPRGVLMYGPPGTGKTM+AKAVA ATTASFI VVGSEFVQKYLGEGPRMVRDVFRLA+EN+P+IVFIDE+DAIATKRFDAQTGADREVQRILLELLNQMDGFDQ+TNVKVIMATNRADTLDPALLRPGRLDRKIEFP PDRRQKR+++QACTA+MNLGD+VDLEDYVNRPEKIS+AD+A+I QEAGLQAVRKNRYVIL +DFD+ YK  + +AD    FY
Sbjct:  456 DKQEDDMFSKYKALQRHLEFLDIQEGYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFLEMVDANYGIVGSTAGSNYYVRILSTLDRERLKPNSSVALHRHSHAVVAILPPESDSSIQMMQMSERPDVSYSDIGGMDVQKQEVREAVELPLTHFDLYKQIGVDPPRGVLMYGPPGTGKTMLAKAVANATTASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIVFIDEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDQATNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIYQACTAQMNLGDEVDLEDYVNRPEKISSADIASICQEAGLQAVRKNRYVILPKDFDKGYKNAIKRADTTFDFY 839          
BLAST of EWM24897.1 vs. NCBI_GenBank
Match: gi|953486974|emb|CEG49036.1| (26s protease regulatory subunit 6b [Plasmopara halstedii])

HSP 1 Score: 684.485 bits (1765), Expect = 0.000e+0
Identity = 324/379 (85.49%), Postives = 357/379 (94.20%), Query Frame = 0
Query:   32 DLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQ--EKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQEAGLQAVRKNRYVILARDFDEAYKKHVTKADKEHWFY 408
            DLY + K L+R LEF+DIQE YIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQF EM+DA+YGIVGSTAGS YYVRILSTLDRE+LKPN SVALHRHSH+VVD+LPPESDS+IQ+MQ  E+PDVSY+DIGGMDIQKQEV+EAVELPLTHF+LYKQIG+DPPRGVLMYGPPGTGKTM+AKAVA ATTA+FISVVGSEFVQKYLGEGPRMVRDVFRLA+ENSP+IVFIDE+DAIATKRFDAQTGADREVQRILLELLNQMDGFDQ+TNVKVIMATNRADTLDPALLRPGRLDRKIEFP PDRRQKR+++QACTAKMNLGD+VDLEDYVNRPEKIS+AD+A+I QEAGLQAVRKNRYV+L +DFD+ YK  + +AD    FY
Sbjct:   26 DLYVKFKSLERHLEFLDIQEGYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFLEMVDANYGIVGSTAGSNYYVRILSTLDRERLKPNSSVALHRHSHAVVDVLPPESDSSIQMMQMSERPDVSYSDIGGMDIQKQEVREAVELPLTHFDLYKQIGVDPPRGVLMYGPPGTGKTMLAKAVANATTAAFISVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIVFIDEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDQATNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIYQACTAKMNLGDEVDLEDYVNRPEKISSADIASICQEAGLQAVRKNRYVVLPKDFDKGYKSAIKRADTTFEFY 404          
BLAST of EWM24897.1 vs. NCBI_GenBank
Match: gi|673052763|ref|XP_008880342.1| (26S protease regulatory subunit 6B [Aphanomyces invadans] >gi|574464008|gb|ETV91062.1| 26S protease regulatory subunit 6B [Aphanomyces invadans])

HSP 1 Score: 683.715 bits (1763), Expect = 0.000e+0
Identity = 329/400 (82.25%), Postives = 364/400 (91.00%), Query Frame = 0
Query:   11 PGLMDMDVDSGAGKEEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQ--EKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQEAGLQAVRKNRYVILARDFDEAYKKHVTKADKEHWFY 408
            P   ++D  S     + +QE+D++++ K L+R LEF+DIQE YIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQF EM+DA+YGIVGSTAGS YYVRILSTLDRE+LKPN SVALHRHSH+VV ILPPESDS+IQ+MQ  E+PDVSY+DIGGMDIQKQEV+EAVELPLTHF+LYKQIGIDPPRGVLMYGPPGTGKTM+AKAVA ATTASFI VVGSEFVQKYLGEGPRMVRDVFRLA+ENSP IVFIDE+DAIATKRFDAQTGADREVQRILLELLNQMDGFDQ+TNVKVIMATNRADTLDPALLRPGRLDRKIEFP PDRRQKR+++QACTAKMNLGD+VDLEDYVNRPEKIS AD+A+I QEAGLQAVRKNRYVIL +DFD+ YK  + +AD    FY
Sbjct:    7 PSAAEVDDVSMVPDNKHEQEDDMFSKYKALERHLEFLDIQEGYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFLEMVDANYGIVGSTAGSNYYVRILSTLDRERLKPNSSVALHRHSHAVVAILPPESDSSIQMMQMEERPDVSYSDIGGMDIQKQEVREAVELPLTHFDLYKQIGIDPPRGVLMYGPPGTGKTMLAKAVANATTASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPCIVFIDEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIYQACTAKMNLGDEVDLEDYVNRPEKISCADIASICQEAGLQAVRKNRYVILPKDFDKGYKNAIKRADTTFEFY 406          
BLAST of EWM24897.1 vs. NCBI_GenBank
Match: gi|695372273|ref|XP_009514770.1| (hypothetical protein PHYSODRAFT_554008 [Phytophthora sojae] >gi|348687681|gb|EGZ27495.1| hypothetical protein PHYSODRAFT_554008 [Phytophthora sojae])

HSP 1 Score: 683.715 bits (1763), Expect = 0.000e+0
Identity = 324/383 (84.60%), Postives = 359/383 (93.73%), Query Frame = 0
Query:   28 QQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQ--EKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQEAGLQAVRKNRYVILARDFDEAYKKHVTKADKEHWFY 408
            + + DLY + K L+R LEF+DIQE YIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQF EM+DA+YGIVGSTAGS YYVRILSTLDRE+LKPN SVALHRHSH+VVD+LPPESDS+IQ+MQ  E+PDVSY+DIGGMDIQKQEV+EAVELPLTHF+LYKQIG+DPPRGVLMYGPPGTGKTM+AKAVA ATTA+FISVVGSEFVQKYLGEGPRMVRDVFRLA+ENSP+IVFIDE+DAIATKRFDAQTGADREVQRILLELLNQMDGFDQ+TNVKVIMATNRADTLDPALLRPGRLDRKIEFP PDRRQKR+++QACTAKMNLGD+VDLEDYVNRPEKIS+AD+A+I QEAGLQAVRKNRYV+L +DFD+ YK  + +AD    FY
Sbjct:   22 ESKTDLYAKYKSLERHLEFLDIQEGYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFLEMVDANYGIVGSTAGSNYYVRILSTLDRERLKPNSSVALHRHSHAVVDVLPPESDSSIQMMQMSERPDVSYSDIGGMDIQKQEVREAVELPLTHFDLYKQIGVDPPRGVLMYGPPGTGKTMLAKAVANATTAAFISVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIVFIDEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDQATNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIYQACTAKMNLGDEVDLEDYVNRPEKISSADIASICQEAGLQAVRKNRYVVLPKDFDKGYKNAIKRADTTFEFY 404          
The following BLAST results are available for this feature:
BLAST of EWM24897.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106524|gb|EWM24897.1|0.000e+0100.00ATPase, AAA-type, core [Nannochloropsis gaditana][more]
gi|585106525|gb|EWM24898.1|0.000e+0100.00ATPase, AAA-type, core [Nannochloropsis gaditana][more]
gi|553189471|ref|XP_005855008.1|0.000e+099.7626S proteasome regulatory subunit T3 [Nannochlorop... [more]
gi|585106526|gb|EWM24899.1|0.000e+099.73ATPase, AAA-type, core [Nannochloropsis gaditana][more]
gi|298714687|emb|CBJ27612.1|0.000e+084.39conserved unknown protein [Ectocarpus siliculosus][more]
gi|698825135|ref|XP_009845596.1|0.000e+084.7226S protease regulatory subunit 6B [Aphanomyces as... [more]
gi|1173941746|gb|OQR90853.1|0.000e+084.1126S protease regulatory subunit 6B [Thraustotheca ... [more]
gi|953486974|emb|CEG49036.1|0.000e+085.4926s protease regulatory subunit 6b [Plasmopara hal... [more]
gi|673052763|ref|XP_008880342.1|0.000e+082.2526S protease regulatory subunit 6B [Aphanomyces in... [more]
gi|695372273|ref|XP_009514770.1|0.000e+084.60hypothetical protein PHYSODRAFT_554008 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5799rna5799Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications