EWM24899.1, cds5783 (CDS) Nannochloropsis gaditana

Overview
NameEWM24899.1
Unique Namecds5783
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:866129..866200 +
Alignment locationCM002466.1:866311..866441 +
Alignment locationCM002466.1:866834..866931 +
Alignment locationCM002466.1:867024..867223 +
Alignment locationCM002466.1:867434..867603 +
Alignment locationCM002466.1:867778..867925 +
Alignment locationCM002466.1:868058..868132 +
Alignment locationCM002466.1:868391..868535 +
Alignment locationCM002466.1:868685..868851 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24899.1
ProductATPase, AAA-type, core
Orig transcript idgnl|cribi|Naga_100116g4.9027.mrna
GbkeyCDS
Noteencoded by transcript variant 3; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:866129..866200 +
CM002466.1supercontigCM002466.1:866311..866441 +
CM002466.1supercontigCM002466.1:866834..866931 +
CM002466.1supercontigCM002466.1:867024..867223 +
CM002466.1supercontigCM002466.1:867434..867603 +
CM002466.1supercontigCM002466.1:867778..867925 +
CM002466.1supercontigCM002466.1:868058..868132 +
CM002466.1supercontigCM002466.1:868391..868535 +
CM002466.1supercontigCM002466.1:868685..868851 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0030163protein catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
GO:0000166nucleotide binding
GO:0016787hydrolase activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR003960ATPase_AAA_CS
IPR00593726S_Psome_P45
IPR027417P-loop_NTPase
IPR003959ATPase_AAA_core
IPR003593AAA+_ATPase
Homology
[Close]
BLAST of EWM24899.1 vs. NCBI_GenBank
Match: gi|585106526|gb|EWM24899.1| (ATPase, AAA-type, core [Nannochloropsis gaditana])

HSP 1 Score: 822.002 bits (2122), Expect = 0.000e+0
Identity = 401/401 (100.00%), Postives = 401/401 (100.00%), Query Frame = 0 
Query:    1 MASVAVATRTPGLMDMDVDSGAGKQEEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQEKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQVSTKNKREKAIKETILGDMEACGPGFSPK 401
            MASVAVATRTPGLMDMDVDSGAGKQEEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQEKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQVSTKNKREKAIKETILGDMEACGPGFSPK
Sbjct:    1 MASVAVATRTPGLMDMDVDSGAGKQEEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQEKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQVSTKNKREKAIKETILGDMEACGPGFSPK 401
[Close]
BLAST of EWM24899.1 vs. NCBI_GenBank
Match: gi|553189471|ref|XP_005855008.1| (26S proteasome regulatory subunit T3 [Nannochloropsis gaditana CCMP526] >gi|422294048|gb|EKU21348.1| 26S proteasome regulatory subunit T3 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 763.066 bits (1969), Expect = 0.000e+0
Identity = 372/372 (100.00%), Postives = 372/372 (100.00%), Query Frame = 0 
Query:    1 MASVAVATRTPGLMDMDVDSGAGKQEEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQEKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQ 372
            MASVAVATRTPGLMDMDVDSGAGKQEEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQEKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQ
Sbjct:    1 MASVAVATRTPGLMDMDVDSGAGKQEEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQEKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQ 372
[Close]
BLAST of EWM24899.1 vs. NCBI_GenBank
Match: gi|585106525|gb|EWM24898.1| (ATPase, AAA-type, core [Nannochloropsis gaditana])

HSP 1 Score: 756.903 bits (1953), Expect = 0.000e+0
Identity = 371/372 (99.73%), Postives = 371/372 (99.73%), Query Frame = 0 
Query:    1 MASVAVATRTPGLMDMDVDSGAGKQEEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQEKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQ 372
            MASVAVATRTPGLMDMDVDSGAGK EEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQEKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQ
Sbjct:    1 MASVAVATRTPGLMDMDVDSGAGK-EEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQEKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQ 371
[Close]
BLAST of EWM24899.1 vs. NCBI_GenBank
Match: gi|585106524|gb|EWM24897.1| (ATPase, AAA-type, core [Nannochloropsis gaditana])

HSP 1 Score: 756.133 bits (1951), Expect = 0.000e+0
Identity = 371/372 (99.73%), Postives = 371/372 (99.73%), Query Frame = 0 
Query:    1 MASVAVATRTPGLMDMDVDSGAGKQEEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQEKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQ 372
            MASVAVATRTPGLMDMDVDSGAGK EEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQEKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQ
Sbjct:    1 MASVAVATRTPGLMDMDVDSGAGK-EEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQEKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQ 371
[Close]
BLAST of EWM24899.1 vs. NCBI_GenBank
Match: gi|298714687|emb|CBJ27612.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 647.506 bits (1669), Expect = 0.000e+0
Identity = 307/339 (90.56%), Postives = 329/339 (97.05%), Query Frame = 0 
Query:   34 LYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQEKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQ 372
            +Y +LK LQ+ +EF+DIQEEYIKDEMKNLKRELIRAKEE+KRIQSVPLVIGQFNE+IDA+YGIVGSTAGS Y+VRILSTLDRE LKPN SVALHRHSHSVV+ILPPESDSTIQLMQE+PDV+Y+DIGGMD+QKQEVKEAVELPLTHF+LYKQIGIDPPRGVLMYGPPGTGKTMMAKAVA AT+ASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPS+VFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFP PDRRQKRMVF ACTAKMNL ++VDLEDYVNRPEK+SAAD++AIAQ
Sbjct:   38 VYVKLKSLQKHMEFLDIQEEYIKDEMKNLKRELIRAKEEIKRIQSVPLVIGQFNEIIDANYGIVGSTAGSNYFVRILSTLDREVLKPNTSVALHRHSHSVVEILPPESDSTIQLMQERPDVTYHDIGGMDMQKQEVKEAVELPLTHFDLYKQIGIDPPRGVLMYGPPGTGKTMMAKAVANATSASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSVVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPVPDRRQKRMVFTACTAKMNLSEEVDLEDYVNRPEKVSAADISAIAQ 376
[Close]
BLAST of EWM24899.1 vs. NCBI_GenBank
Match: gi|1173941746|gb|OQR90853.1| (26S protease regulatory subunit 6B [Thraustotheca clavata])

HSP 1 Score: 636.721 bits (1641), Expect = 0.000e+0
Identity = 302/363 (83.20%), Postives = 339/363 (93.39%), Query Frame = 0 
Query:   12 GLMDMDVDSGAGKQEEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQ--EKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQ 372
            GL  M+++        ++QE+D++++ K LQR LEF+DIQE YIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQF EM+DA+YGIVGSTAGS YYVRILSTLDRE+LKPN SVALHRHSH+VV ILPPESDS+IQ+MQ  E+PDVSY+DIGGMD+QKQEV+EAVELPLTHF+LYKQIG+DPPRGVLMYGPPGTGKTM+AKAVA ATTASFI VVGSEFVQKYLGEGPRMVRDVFRLA+EN+P+IVFIDE+DAIATKRFDAQTGADREVQRILLELLNQMDGFDQ+TNVKVIMATNRADTLDPALLRPGRLDRKIEFP PDRRQKR+++QACTA+MNLGD+VDLEDYVNRPEKIS+AD+A+I Q
Sbjct:  440 GLKTMEMEDVEMLPLSDKQEDDMFSKYKALQRHLEFLDIQEGYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFLEMVDANYGIVGSTAGSNYYVRILSTLDRERLKPNSSVALHRHSHAVVAILPPESDSSIQMMQMSERPDVSYSDIGGMDVQKQEVREAVELPLTHFDLYKQIGVDPPRGVLMYGPPGTGKTMLAKAVANATTASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIVFIDEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDQATNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIYQACTAQMNLGDEVDLEDYVNRPEKISSADIASICQ 802
[Close]
BLAST of EWM24899.1 vs. NCBI_GenBank
Match: gi|698825135|ref|XP_009845596.1| (26S protease regulatory subunit 6B [Aphanomyces astaci] >gi|574099274|gb|ETV64899.1| 26S protease regulatory subunit 6B [Aphanomyces astaci])

HSP 1 Score: 636.336 bits (1640), Expect = 0.000e+0
Identity = 304/359 (84.68%), Postives = 338/359 (94.15%), Query Frame = 0 
Query:   16 MDVDSGAGKQEEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQ--EKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQ 372
            +D++  +   E+++QE+D++++ K L+R LEF+DIQE YIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQF EM+DA+YGIVGSTAGS YYVRILSTLDRE+LKPN SVALHRHSH+VV ILPPESDS+IQ+MQ  E+PDVSY+DIGGMDIQKQEV+EAVELPLTHF+LYKQIGIDPPRGVLMYGPPGTGKTM+AKAVA ATTASFI VVGSEFVQKYLGEGPRMVRDVFRLA+ENSP IVFIDE+DAIATKRFDAQTGADREVQRILLELLNQMDGFDQ+TNVKVIMATNRADTLDPALLRPGRLDRKIEFP PDRRQKR+++QACTAKMNLGD+VDLEDYVNRPEKIS AD+A+I Q
Sbjct:   10 VDIEDVSMLPEKQEQEDDMFSKFKTLERHLEFLDIQEGYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFLEMVDANYGIVGSTAGSNYYVRILSTLDRERLKPNSSVALHRHSHAVVAILPPESDSSIQMMQMEERPDVSYSDIGGMDIQKQEVREAVELPLTHFDLYKQIGIDPPRGVLMYGPPGTGKTMLAKAVANATTASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPCIVFIDEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDQATNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIYQACTAKMNLGDEVDLEDYVNRPEKISCADIASICQ 368
[Close]
BLAST of EWM24899.1 vs. NCBI_GenBank
Match: gi|953486974|emb|CEG49036.1| (26s protease regulatory subunit 6b [Plasmopara halstedii])

HSP 1 Score: 634.41 bits (1635), Expect = 0.000e+0
Identity = 301/342 (88.01%), Postives = 329/342 (96.20%), Query Frame = 0 
Query:   33 DLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQ--EKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQ 372
            DLY + K L+R LEF+DIQE YIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQF EM+DA+YGIVGSTAGS YYVRILSTLDRE+LKPN SVALHRHSH+VVD+LPPESDS+IQ+MQ  E+PDVSY+DIGGMDIQKQEV+EAVELPLTHF+LYKQIG+DPPRGVLMYGPPGTGKTM+AKAVA ATTA+FISVVGSEFVQKYLGEGPRMVRDVFRLA+ENSP+IVFIDE+DAIATKRFDAQTGADREVQRILLELLNQMDGFDQ+TNVKVIMATNRADTLDPALLRPGRLDRKIEFP PDRRQKR+++QACTAKMNLGD+VDLEDYVNRPEKIS+AD+A+I Q
Sbjct:   26 DLYVKFKSLERHLEFLDIQEGYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFLEMVDANYGIVGSTAGSNYYVRILSTLDRERLKPNSSVALHRHSHAVVDVLPPESDSSIQMMQMSERPDVSYSDIGGMDIQKQEVREAVELPLTHFDLYKQIGVDPPRGVLMYGPPGTGKTMLAKAVANATTAAFISVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIVFIDEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDQATNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIYQACTAKMNLGDEVDLEDYVNRPEKISSADIASICQ 367
[Close]
BLAST of EWM24899.1 vs. NCBI_GenBank
Match: gi|566012368|gb|ETI35279.1| (26S protease regulatory subunit 6B [Phytophthora parasitica P1569])

HSP 1 Score: 634.41 bits (1635), Expect = 0.000e+0
Identity = 301/346 (86.99%), Postives = 331/346 (95.66%), Query Frame = 0 
Query:   29 QQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQ--EKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQ 372
            + + DLY + K L+R LEF+DIQE YIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQF EM+DA+YGIVGSTAGS YYVRILSTLDRE+LKPN SVALHRHSH+VVD+LPPESDS+IQ+MQ  E+PDVSY+DIGGMDIQKQEV+EAVELPLTHF+LYKQIG+DPPRGVLMYGPPGTGKTM+AKAVA ATTA+FISVVGSEFVQKYLGEGPRMVRDVFRLA+ENSP+IVFIDE+DAIATKRFDAQTGADREVQRILLELLNQMDGFDQ+TNVKVIMATNRADTLDPALLRPGRLDRKIEFP PDRRQKR+++QACTAKMNLGD+VDLEDYVNRPEKIS+AD+A+I Q
Sbjct:   52 ETKTDLYAKYKSLERHLEFLDIQEGYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFLEMVDANYGIVGSTAGSNYYVRILSTLDRERLKPNSSVALHRHSHAVVDVLPPESDSSIQMMQMSERPDVSYSDIGGMDIQKQEVREAVELPLTHFDLYKQIGVDPPRGVLMYGPPGTGKTMLAKAVANATTAAFISVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIVFIDEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDQATNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIYQACTAKMNLGDEVDLEDYVNRPEKISSADIASICQ 397
[Close]
BLAST of EWM24899.1 vs. NCBI_GenBank
Match: gi|669154784|ref|XP_008612954.1| (26S protease regulatory subunit 6B [Saprolegnia diclina VS20] >gi|813151264|ref|XP_012201164.1| 26S protease regulatory subunit 6B [Saprolegnia parasitica CBS 223.65] >gi|530735489|gb|EQC33731.1| 26S protease regulatory subunit 6B [Saprolegnia diclina VS20] >gi|641534139|gb|KDO28098.1| 26S protease regulatory subunit 6B [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 634.41 bits (1635), Expect = 0.000e+0
Identity = 304/363 (83.75%), Postives = 338/363 (93.11%), Query Frame = 0 
Query:   12 GLMDMDVDSGAGKQEEEQQEEDLYTRLKQLQRQLEFVDIQEEYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFNEMIDAHYGIVGSTAGSTYYVRILSTLDREKLKPNVSVALHRHSHSVVDILPPESDSTIQLMQ--EKPDVSYNDIGGMDIQKQEVKEAVELPLTHFELYKQIGIDPPRGVLMYGPPGTGKTMMAKAVAQATTASFISVVGSEFVQKYLGEGPRMVRDVFRLARENSPSIVFIDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPNPDRRQKRMVFQACTAKMNLGDDVDLEDYVNRPEKISAADVAAIAQ 372
            GL   D++  A     ++QE+D++++ K LQR LEF+DIQE YIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQF EM+DA+YGIVGSTAGS YYVRILSTLDRE+LKPN SVALHRHSH+VV ILPPESDS+IQ+MQ  E+PDVSY+DIGGMD+QKQEV+EAVELPLTHF+LYKQIG+DPPRGVLMYGPPGTGKTM+AKAVA ATTASFI VVGSEFVQKYLGEGPRMVRDVFRLA+ENSP+IVFIDE+DAIATKRFDAQTGADREVQRILLELLNQMDGFDQ+TNVKVIMATNRADTLDPALLRPGRLDRKIEFP PDRRQKR+++QACTA MNLGD+VDLEDYVNRPEKIS+AD+A+I Q
Sbjct:    5 GLKTTDMEDVAMLPLSDKQEDDMFSKYKALQRHLEFLDIQEGYIKDEMKNLKRELIRAKEEVKRIQSVPLVIGQFLEMVDANYGIVGSTAGSNYYVRILSTLDRERLKPNSSVALHRHSHAVVAILPPESDSSIQMMQMSERPDVSYSDIGGMDVQKQEVREAVELPLTHFDLYKQIGVDPPRGVLMYGPPGTGKTMLAKAVANATTASFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENSPAIVFIDEVDAIATKRFDAQTGADREVQRILLELLNQMDGFDQATNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIYQACTANMNLGDEVDLEDYVNRPEKISSADIASICQ 367
The following BLAST results are available for this feature:
BLAST of EWM24899.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106526|gb|EWM24899.1|0.000e+0100.00ATPase, AAA-type, core [Nannochloropsis gaditana][more]
gi|553189471|ref|XP_005855008.1|0.000e+0100.0026S proteasome regulatory subunit T3 [Nannochlorop... [more]
gi|585106525|gb|EWM24898.1|0.000e+099.73ATPase, AAA-type, core [Nannochloropsis gaditana][more]
gi|585106524|gb|EWM24897.1|0.000e+099.73ATPase, AAA-type, core [Nannochloropsis gaditana][more]
gi|298714687|emb|CBJ27612.1|0.000e+090.56conserved unknown protein [Ectocarpus siliculosus][more]
gi|1173941746|gb|OQR90853.1|0.000e+083.2026S protease regulatory subunit 6B [Thraustotheca ... [more]
gi|698825135|ref|XP_009845596.1|0.000e+084.6826S protease regulatory subunit 6B [Aphanomyces as... [more]
gi|953486974|emb|CEG49036.1|0.000e+088.0126s protease regulatory subunit 6b [Plasmopara hal... [more]
gi|566012368|gb|ETI35279.1|0.000e+086.9926S protease regulatory subunit 6B [Phytophthora p... [more]
gi|669154784|ref|XP_008612954.1|0.000e+083.7526S protease regulatory subunit 6B [Saprolegnia di... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5798rna5798Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications