EWM24900.1, cds5771 (CDS) Nannochloropsis gaditana

Overview
NameEWM24900.1
Unique Namecds5771
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:840034..840365 +
Alignment locationCM002466.1:840471..840739 +
Alignment locationCM002466.1:840906..841014 +
Alignment locationCM002466.1:841199..842129 +
Alignment locationCM002466.1:842277..842390 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24900.1
ProductZinc finger, MYND-type
Orig transcript idgnl|cribi|Naga_100116g14.9028.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:840034..840365 +
CM002466.1supercontigCM002466.1:840471..840739 +
CM002466.1supercontigCM002466.1:840906..841014 +
CM002466.1supercontigCM002466.1:841199..842129 +
CM002466.1supercontigCM002466.1:842277..842390 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR002893Znf_MYND
Homology
[Close]
BLAST of EWM24900.1 vs. NCBI_GenBank
Match: gi|585106527|gb|EWM24900.1| (Zinc finger, MYND-type [Nannochloropsis gaditana])

HSP 1 Score: 1210.67 bits (3131), Expect = 0.000e+0
Identity = 584/584 (100.00%), Postives = 584/584 (100.00%), Query Frame = 0 
Query:    1 MTSTTTELAQPAPAHPRAQRLTKLIAWCKKTSPNFMIREQFVGFKTSTDGNVTAVALKDIPADMHLIRVTPELMFSARDLKRKWRAVYNEIESKIRRYTGTCTAGFLPGTEAEEPATTMALSFALLLEMGDPESKWKPYWESFPEHVPNIFDFDGDYSHLEGSPWREQLEKKQEAMQHILKEIIPPILAKIKGKLGVDDVEGTLKRAYGLWQSRQLKDDVHNKRAQYLVPVLDLIDGESDKLSNVIVDDGPGSTAMHVELVLKSSRKIEAGEELSQMYDSCSNASYLHWYGYITDSMVFGNLSHKTFMTTAQLTATALEAVEEEAAREGKEGTEERKKEVEAMTALKKDLLSRIAGKERAGGRRSLELTHRSEVFEEAAFVLTAIAKIALCPSLEPLEKVRRSLSSNDIKDILKNADEMMTGMDGETLAPVAVGAVERILCQLRHGDSYLRDMVALDKSGEKEANRLLIKVRMSEKFLLLRARAEVCKKLGLTDRHERPRVCDNCATFTHLRACGHCGTTAYCSRRCQVMKWREHKKAVIPPATTSSGWRRFLRVGTGGREADTASESTVERAVEGSREGKCMQ 584
            MTSTTTELAQPAPAHPRAQRLTKLIAWCKKTSPNFMIREQFVGFKTSTDGNVTAVALKDIPADMHLIRVTPELMFSARDLKRKWRAVYNEIESKIRRYTGTCTAGFLPGTEAEEPATTMALSFALLLEMGDPESKWKPYWESFPEHVPNIFDFDGDYSHLEGSPWREQLEKKQEAMQHILKEIIPPILAKIKGKLGVDDVEGTLKRAYGLWQSRQLKDDVHNKRAQYLVPVLDLIDGESDKLSNVIVDDGPGSTAMHVELVLKSSRKIEAGEELSQMYDSCSNASYLHWYGYITDSMVFGNLSHKTFMTTAQLTATALEAVEEEAAREGKEGTEERKKEVEAMTALKKDLLSRIAGKERAGGRRSLELTHRSEVFEEAAFVLTAIAKIALCPSLEPLEKVRRSLSSNDIKDILKNADEMMTGMDGETLAPVAVGAVERILCQLRHGDSYLRDMVALDKSGEKEANRLLIKVRMSEKFLLLRARAEVCKKLGLTDRHERPRVCDNCATFTHLRACGHCGTTAYCSRRCQVMKWREHKKAVIPPATTSSGWRRFLRVGTGGREADTASESTVERAVEGSREGKCMQ
Sbjct:    1 MTSTTTELAQPAPAHPRAQRLTKLIAWCKKTSPNFMIREQFVGFKTSTDGNVTAVALKDIPADMHLIRVTPELMFSARDLKRKWRAVYNEIESKIRRYTGTCTAGFLPGTEAEEPATTMALSFALLLEMGDPESKWKPYWESFPEHVPNIFDFDGDYSHLEGSPWREQLEKKQEAMQHILKEIIPPILAKIKGKLGVDDVEGTLKRAYGLWQSRQLKDDVHNKRAQYLVPVLDLIDGESDKLSNVIVDDGPGSTAMHVELVLKSSRKIEAGEELSQMYDSCSNASYLHWYGYITDSMVFGNLSHKTFMTTAQLTATALEAVEEEAAREGKEGTEERKKEVEAMTALKKDLLSRIAGKERAGGRRSLELTHRSEVFEEAAFVLTAIAKIALCPSLEPLEKVRRSLSSNDIKDILKNADEMMTGMDGETLAPVAVGAVERILCQLRHGDSYLRDMVALDKSGEKEANRLLIKVRMSEKFLLLRARAEVCKKLGLTDRHERPRVCDNCATFTHLRACGHCGTTAYCSRRCQVMKWREHKKAVIPPATTSSGWRRFLRVGTGGREADTASESTVERAVEGSREGKCMQ 584
[Close]
BLAST of EWM24900.1 vs. NCBI_GenBank
Match: gi|553184873|ref|XP_005854160.1| (hypothetical protein NGA_0212500 [Nannochloropsis gaditana CCMP526] >gi|422294902|gb|EKU22202.1| hypothetical protein NGA_0212500 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1137.09 bits (2940), Expect = 0.000e+0
Identity = 547/547 (100.00%), Postives = 547/547 (100.00%), Query Frame = 0 
Query:    1 MTSTTTELAQPAPAHPRAQRLTKLIAWCKKTSPNFMIREQFVGFKTSTDGNVTAVALKDIPADMHLIRVTPELMFSARDLKRKWRAVYNEIESKIRRYTGTCTAGFLPGTEAEEPATTMALSFALLLEMGDPESKWKPYWESFPEHVPNIFDFDGDYSHLEGSPWREQLEKKQEAMQHILKEIIPPILAKIKGKLGVDDVEGTLKRAYGLWQSRQLKDDVHNKRAQYLVPVLDLIDGESDKLSNVIVDDGPGSTAMHVELVLKSSRKIEAGEELSQMYDSCSNASYLHWYGYITDSMVFGNLSHKTFMTTAQLTATALEAVEEEAAREGKEGTEERKKEVEAMTALKKDLLSRIAGKERAGGRRSLELTHRSEVFEEAAFVLTAIAKIALCPSLEPLEKVRRSLSSNDIKDILKNADEMMTGMDGETLAPVAVGAVERILCQLRHGDSYLRDMVALDKSGEKEANRLLIKVRMSEKFLLLRARAEVCKKLGLTDRHERPRVCDNCATFTHLRACGHCGTTAYCSRRCQVMKWREHKKAVIPPATTSS 547
            MTSTTTELAQPAPAHPRAQRLTKLIAWCKKTSPNFMIREQFVGFKTSTDGNVTAVALKDIPADMHLIRVTPELMFSARDLKRKWRAVYNEIESKIRRYTGTCTAGFLPGTEAEEPATTMALSFALLLEMGDPESKWKPYWESFPEHVPNIFDFDGDYSHLEGSPWREQLEKKQEAMQHILKEIIPPILAKIKGKLGVDDVEGTLKRAYGLWQSRQLKDDVHNKRAQYLVPVLDLIDGESDKLSNVIVDDGPGSTAMHVELVLKSSRKIEAGEELSQMYDSCSNASYLHWYGYITDSMVFGNLSHKTFMTTAQLTATALEAVEEEAAREGKEGTEERKKEVEAMTALKKDLLSRIAGKERAGGRRSLELTHRSEVFEEAAFVLTAIAKIALCPSLEPLEKVRRSLSSNDIKDILKNADEMMTGMDGETLAPVAVGAVERILCQLRHGDSYLRDMVALDKSGEKEANRLLIKVRMSEKFLLLRARAEVCKKLGLTDRHERPRVCDNCATFTHLRACGHCGTTAYCSRRCQVMKWREHKKAVIPPATTSS
Sbjct:    1 MTSTTTELAQPAPAHPRAQRLTKLIAWCKKTSPNFMIREQFVGFKTSTDGNVTAVALKDIPADMHLIRVTPELMFSARDLKRKWRAVYNEIESKIRRYTGTCTAGFLPGTEAEEPATTMALSFALLLEMGDPESKWKPYWESFPEHVPNIFDFDGDYSHLEGSPWREQLEKKQEAMQHILKEIIPPILAKIKGKLGVDDVEGTLKRAYGLWQSRQLKDDVHNKRAQYLVPVLDLIDGESDKLSNVIVDDGPGSTAMHVELVLKSSRKIEAGEELSQMYDSCSNASYLHWYGYITDSMVFGNLSHKTFMTTAQLTATALEAVEEEAAREGKEGTEERKKEVEAMTALKKDLLSRIAGKERAGGRRSLELTHRSEVFEEAAFVLTAIAKIALCPSLEPLEKVRRSLSSNDIKDILKNADEMMTGMDGETLAPVAVGAVERILCQLRHGDSYLRDMVALDKSGEKEANRLLIKVRMSEKFLLLRARAEVCKKLGLTDRHERPRVCDNCATFTHLRACGHCGTTAYCSRRCQVMKWREHKKAVIPPATTSS 547
The following BLAST results are available for this feature:
BLAST of EWM24900.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585106527|gb|EWM24900.1|0.000e+0100.00Zinc finger, MYND-type [Nannochloropsis gaditana][more]
gi|553184873|ref|XP_005854160.1|0.000e+0100.00hypothetical protein NGA_0212500 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5786rna5786Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications