EWM24935.1, cds5727 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24935.1 vs. NCBI_GenBank
Match: gi|585106565|gb|EWM24935.1| (atp-binding cassette [Nannochloropsis gaditana]) HSP 1 Score: 238.81 bits (608), Expect = 1.050e-79 Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0
Query: 1 MMKVCDTQIGGGELYVTKGLSGGERKRLNIATELLANPSILLLDEPTSGLDSVMGELICLLLNDLARREPKRTVVVAVHSPPSRIFTLFSLLTVLTSNGELAYFGERSGVLPFVESLGW 119
MMKVCDTQIGGGELYVTKGLSGGERKRLNIATELLANPSILLLDEPTSGLDSVMGELICLLLNDLARREPKRTVVVAVHSPPSRIFTLFSLLTVLTSNGELAYFGERSGVLPFVESLGW
Sbjct: 1 MMKVCDTQIGGGELYVTKGLSGGERKRLNIATELLANPSILLLDEPTSGLDSVMGELICLLLNDLARREPKRTVVVAVHSPPSRIFTLFSLLTVLTSNGELAYFGERSGVLPFVESLGW 119
BLAST of EWM24935.1 vs. NCBI_GenBank
Match: gi|553191705|ref|XP_005855437.1| (atp-binding cassette sub-family g member 2, partial [Nannochloropsis gaditana CCMP526] >gi|422293623|gb|EKU20923.1| atp-binding cassette sub-family g member 2, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 160.999 bits (406), Expect = 1.354e-48 Identity = 78/119 (65.55%), Postives = 98/119 (82.35%), Query Frame = 0
Query: 1 MMKVCDTQIGGGELYVTKGLSGGERKRLNIATELLANPSILLLDEPTSGLDSVMGELICLLLNDLARREPKRTVVVAVHSPPSRIFTLFSLLTVLTSNGELAYFGERSGVLPFVESLGW 119
+ KV D +IGGG+LY+ G+SGGERKRLNIATELL NP ILLLDEPTSGLDSVMGEL+CLLL +A + P+R V+ A+H+P SR+FTL S +T+LTS+GELAY+G R +L F+E LG+
Sbjct: 7 LTKVGDQKIGGGDLYLVAGISGGERKRLNIATELLGNPRILLLDEPTSGLDSVMGELVCLLLKSIAVQAPRRLVLAAIHTPSSRVFTLVSHVTLLTSHGELAYWGPRDKLLLFLEGLGY 125
BLAST of EWM24935.1 vs. NCBI_GenBank
Match: gi|585106124|gb|EWM24607.1| (abc subfamily abcg [Nannochloropsis gaditana]) HSP 1 Score: 162.155 bits (409), Expect = 2.585e-44 Identity = 78/119 (65.55%), Postives = 98/119 (82.35%), Query Frame = 0
Query: 1 MMKVCDTQIGGGELYVTKGLSGGERKRLNIATELLANPSILLLDEPTSGLDSVMGELICLLLNDLARREPKRTVVVAVHSPPSRIFTLFSLLTVLTSNGELAYFGERSGVLPFVESLGW 119
+ KV D +IGGG+LY+ G+SGGERKRLNIATELL NP ILLLDEPTSGLDSVMGEL+CLLL +A + P+R V+ A+H+P SR+FTL S +T+LTS+GELAY+G R +L F+E LG+
Sbjct: 200 LTKVGDQKIGGGDLYLVAGISGGERKRLNIATELLGNPRILLLDEPTSGLDSVMGELVCLLLKSIAVQAPRRLVLAAIHTPSSRVFTLVSHVTLLTSHGELAYWGPRDKLLLFLEGLGY 318
BLAST of EWM24935.1 vs. NCBI_GenBank
Match: gi|585109183|gb|EWM27013.1| (white [Nannochloropsis gaditana]) HSP 1 Score: 127.102 bits (318), Expect = 1.035e-31 Identity = 62/122 (50.82%), Postives = 87/122 (71.31%), Query Frame = 0
Query: 1 MMKVCDTQIGGGELYVTKGLSGGERKRLNIATELLANPSILLLDEPTSGLDSVMGELICLLLNDLARRE---PKRTVVVAVHSPPSRIFTLFSLLTVLTSNGELAYFGERSGVLPFVESLGW 119
+ + DT IGGGE + KGLSGGERKRL+I TELL++P I+ LDEPTSGLDSVMGEL+ LL LA + P+R ++ +H+P SR+++ FS + +L + G +AY G R + P+ +SLG+
Sbjct: 173 LARCADTIIGGGEFALVKGLSGGERKRLSIGTELLSHPKIIFLDEPTSGLDSVMGELVTNLLAALATGKNGGPRRVIMCVIHTPSSRMWSHFSHVLLLATGGFMAYHGTREALFPYFKSLGY 294
BLAST of EWM24935.1 vs. NCBI_GenBank
Match: gi|552938892|gb|ESA21986.1| (hypothetical protein GLOINDRAFT_74133, partial [Rhizophagus irregularis DAOM 181602]) HSP 1 Score: 108.227 bits (269), Expect = 1.417e-27 Identity = 53/119 (44.54%), Postives = 83/119 (69.75%), Query Frame = 0
Query: 1 MMKVCDTQIGGGELYVTKGLSGGERKRLNIATELLANPSILLLDEPTSGLDSVMGELICLLLNDLARREPKRTVVVAVHSPPSRIFTLFSLLTVLTSNGELAYFGERSGVLPFVESLGW 119
+ K +T IG + T G+SGGERKR+NIA+ELL +PS++LLDEPTSGLDS + I +L + A ++ K+T+++ VH P S++F +F L V+ ++G + YFGER+G + ++ G+
Sbjct: 27 LTKCANTIIGD---HKTHGVSGGERKRVNIASELLTDPSVILLDEPTSGLDSSLALEITKILKEFAVKQ-KKTIIMVVHQPSSQVFEIFDKLMVM-ADGHMVYFGERAGAVDYLADQGY 140
BLAST of EWM24935.1 vs. NCBI_GenBank
Match: gi|552912525|gb|ERZ97960.1| (hypothetical protein GLOINDRAFT_70845, partial [Rhizophagus irregularis DAOM 181602]) HSP 1 Score: 107.457 bits (267), Expect = 1.353e-26 Identity = 53/119 (44.54%), Postives = 83/119 (69.75%), Query Frame = 0
Query: 1 MMKVCDTQIGGGELYVTKGLSGGERKRLNIATELLANPSILLLDEPTSGLDSVMGELICLLLNDLARREPKRTVVVAVHSPPSRIFTLFSLLTVLTSNGELAYFGERSGVLPFVESLGW 119
+ K +T IG ++T+G+SGGERKR NIA+ELL +PS++LLDEPTSGLDS + I +L + A ++ K+T+++ VH P S +F F L V+ ++G + YFGER+G++ ++ G+
Sbjct: 88 LTKCANTIIGD---HMTRGVSGGERKRANIASELLTDPSVILLDEPTSGLDSSLALEITKILKEFAVKQ-KKTIIMVVHQPSSEVFETFDKLMVM-ADGHMVYFGERAGLVDYLADQGY 201
BLAST of EWM24935.1 vs. NCBI_GenBank
Match: gi|828230715|ref|XP_012564949.1| (PREDICTED: ABC transporter G family member 22-like, partial [Hydra vulgaris]) HSP 1 Score: 108.612 bits (270), Expect = 1.972e-25 Identity = 54/117 (46.15%), Postives = 79/117 (67.52%), Query Frame = 0
Query: 2 MKVCDTQIGGGELYVTKGLSGGERKRLNIATELLANPSILLLDEPTSGLDSVMGELICLLLNDLARREPKRTVVVAVHSPPSRIFTLFSLLTVLTSNGELAYFGERSGVLPFVESLG 118
++ C+ + GG+ Y TKG SGGERKR +IA EL+ NP+ ++LDEPT+GLDS + L +LA +E KR + + +H P S++F +F L +L NG + +FG+ S VLPF ES+G
Sbjct: 136 LRKCENTVLGGDFY-TKGCSGGERKRCSIAVELITNPACIILDEPTTGLDSSTAFNLMNTLKNLAEKE-KRAICLTIHQPSSQVFHMFDKLMLLC-NGTVMFFGKNSYVLPFFESIG 249
BLAST of EWM24935.1 vs. NCBI_GenBank
Match: gi|595483284|gb|EXX70709.1| (putative ATP-dependent permease ADP1 [Rhizophagus irregularis DAOM 197198w]) HSP 1 Score: 109.383 bits (272), Expect = 2.146e-25 Identity = 53/119 (44.54%), Postives = 85/119 (71.43%), Query Frame = 0
Query: 1 MMKVCDTQIGGGELYVTKGLSGGERKRLNIATELLANPSILLLDEPTSGLDSVMGELICLLLNDLARREPKRTVVVAVHSPPSRIFTLFSLLTVLTSNGELAYFGERSGVLPFVESLGW 119
+ K +T IG ++T+G+SGGERKR+NIA+ELL +PS++LLDEPTSGLDS + I +L + A ++ K+T+++ +H P S++F F L +L ++G + YFGER+GV+ ++ G+
Sbjct: 216 LTKCANTIIGD---HITRGVSGGERKRVNIASELLTDPSVILLDEPTSGLDSSLALEITTILKEFAVKQ-KKTIIMVIHQPSSQVFESFDKL-MLMADGHMVYFGERAGVVDYLADQGY 329
BLAST of EWM24935.1 vs. NCBI_GenBank
Match: gi|595451530|gb|EXX59291.1| (putative ATP-dependent permease ADP1 [Rhizophagus irregularis DAOM 197198w]) HSP 1 Score: 105.916 bits (263), Expect = 3.902e-25 Identity = 53/119 (44.54%), Postives = 82/119 (68.91%), Query Frame = 0
Query: 1 MMKVCDTQIGGGELYVTKGLSGGERKRLNIATELLANPSILLLDEPTSGLDSVMGELICLLLNDLARREPKRTVVVAVHSPPSRIFTLFSLLTVLTSNGELAYFGERSGVLPFVESLGW 119
+ K +T IG Y+T+G+SGGERKR NIA+ELL + S++LLDEPTSGLDS + I +L + A ++ K+T+++ VH P S +F F L V+ ++G + YFGER+G++ ++ G+
Sbjct: 199 LTKCANTIIGD---YMTRGVSGGERKRANIASELLTDSSVILLDEPTSGLDSSLALEITKILKEFAVKQ-KKTIIMVVHQPSSEVFETFDKLMVM-ADGHMVYFGERAGLVDYLADQGY 312
BLAST of EWM24935.1 vs. NCBI_GenBank
Match: gi|952520778|gb|KRT81082.1| (ABC transporter ATP-binding protein, partial [Oryctes borbonicus]) HSP 1 Score: 102.064 bits (253), Expect = 5.299e-25 Identity = 59/113 (52.21%), Postives = 73/113 (64.60%), Query Frame = 0
Query: 6 DTQIGGGELYVTKGLSGGERKRLNIATELLANPSILLLDEPTSGLDSVMGELICLLLNDLARREPKRTVVVAVHSPPSRIFTLFSLLTVLTSNGELAYFGERSGVLPFVESLG 118
DT IG Y+ +GLSGGE+KR NIA ELL NPS++LLDEPTSGLDS + L A E K T+VV +H P S+IF L L +L S G+ AYFG+ S V+ F S+G
Sbjct: 57 DTIIGD---YIKRGLSGGEKKRANIACELLTNPSLMLLDEPTSGLDSYAAHSLMSTLKKYAASEGK-TIVVTLHQPSSQIFHLCDKL-LLLSGGQTAYFGDTSRVVDFFSSIG 164 The following BLAST results are available for this feature:
BLAST of EWM24935.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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