EWM24935.1, cds5727 (CDS) Nannochloropsis gaditana

Overview
NameEWM24935.1
Unique Namecds5727
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:736528..736880 +
Alignment locationCM002466.1:737021..737027 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24935.1
Productatp-binding cassette
Orig transcript idgnl|cribi|Naga_100086g22.3835.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:736528..736880 +
CM002466.1supercontigCM002466.1:737021..737027 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0016887ATPase activity
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR003439ABC_transporter-like
IPR027417P-loop_NTPase
Homology
BLAST of EWM24935.1 vs. NCBI_GenBank
Match: gi|585106565|gb|EWM24935.1| (atp-binding cassette [Nannochloropsis gaditana])

HSP 1 Score: 238.81 bits (608), Expect = 1.050e-79
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0
Query:    1 MMKVCDTQIGGGELYVTKGLSGGERKRLNIATELLANPSILLLDEPTSGLDSVMGELICLLLNDLARREPKRTVVVAVHSPPSRIFTLFSLLTVLTSNGELAYFGERSGVLPFVESLGW 119
            MMKVCDTQIGGGELYVTKGLSGGERKRLNIATELLANPSILLLDEPTSGLDSVMGELICLLLNDLARREPKRTVVVAVHSPPSRIFTLFSLLTVLTSNGELAYFGERSGVLPFVESLGW
Sbjct:    1 MMKVCDTQIGGGELYVTKGLSGGERKRLNIATELLANPSILLLDEPTSGLDSVMGELICLLLNDLARREPKRTVVVAVHSPPSRIFTLFSLLTVLTSNGELAYFGERSGVLPFVESLGW 119          
BLAST of EWM24935.1 vs. NCBI_GenBank
Match: gi|553191705|ref|XP_005855437.1| (atp-binding cassette sub-family g member 2, partial [Nannochloropsis gaditana CCMP526] >gi|422293623|gb|EKU20923.1| atp-binding cassette sub-family g member 2, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 160.999 bits (406), Expect = 1.354e-48
Identity = 78/119 (65.55%), Postives = 98/119 (82.35%), Query Frame = 0
Query:    1 MMKVCDTQIGGGELYVTKGLSGGERKRLNIATELLANPSILLLDEPTSGLDSVMGELICLLLNDLARREPKRTVVVAVHSPPSRIFTLFSLLTVLTSNGELAYFGERSGVLPFVESLGW 119
            + KV D +IGGG+LY+  G+SGGERKRLNIATELL NP ILLLDEPTSGLDSVMGEL+CLLL  +A + P+R V+ A+H+P SR+FTL S +T+LTS+GELAY+G R  +L F+E LG+
Sbjct:    7 LTKVGDQKIGGGDLYLVAGISGGERKRLNIATELLGNPRILLLDEPTSGLDSVMGELVCLLLKSIAVQAPRRLVLAAIHTPSSRVFTLVSHVTLLTSHGELAYWGPRDKLLLFLEGLGY 125          
BLAST of EWM24935.1 vs. NCBI_GenBank
Match: gi|585106124|gb|EWM24607.1| (abc subfamily abcg [Nannochloropsis gaditana])

HSP 1 Score: 162.155 bits (409), Expect = 2.585e-44
Identity = 78/119 (65.55%), Postives = 98/119 (82.35%), Query Frame = 0
Query:    1 MMKVCDTQIGGGELYVTKGLSGGERKRLNIATELLANPSILLLDEPTSGLDSVMGELICLLLNDLARREPKRTVVVAVHSPPSRIFTLFSLLTVLTSNGELAYFGERSGVLPFVESLGW 119
            + KV D +IGGG+LY+  G+SGGERKRLNIATELL NP ILLLDEPTSGLDSVMGEL+CLLL  +A + P+R V+ A+H+P SR+FTL S +T+LTS+GELAY+G R  +L F+E LG+
Sbjct:  200 LTKVGDQKIGGGDLYLVAGISGGERKRLNIATELLGNPRILLLDEPTSGLDSVMGELVCLLLKSIAVQAPRRLVLAAIHTPSSRVFTLVSHVTLLTSHGELAYWGPRDKLLLFLEGLGY 318          
BLAST of EWM24935.1 vs. NCBI_GenBank
Match: gi|585109183|gb|EWM27013.1| (white [Nannochloropsis gaditana])

HSP 1 Score: 127.102 bits (318), Expect = 1.035e-31
Identity = 62/122 (50.82%), Postives = 87/122 (71.31%), Query Frame = 0
Query:    1 MMKVCDTQIGGGELYVTKGLSGGERKRLNIATELLANPSILLLDEPTSGLDSVMGELICLLLNDLARRE---PKRTVVVAVHSPPSRIFTLFSLLTVLTSNGELAYFGERSGVLPFVESLGW 119
            + +  DT IGGGE  + KGLSGGERKRL+I TELL++P I+ LDEPTSGLDSVMGEL+  LL  LA  +   P+R ++  +H+P SR+++ FS + +L + G +AY G R  + P+ +SLG+
Sbjct:  173 LARCADTIIGGGEFALVKGLSGGERKRLSIGTELLSHPKIIFLDEPTSGLDSVMGELVTNLLAALATGKNGGPRRVIMCVIHTPSSRMWSHFSHVLLLATGGFMAYHGTREALFPYFKSLGY 294          
BLAST of EWM24935.1 vs. NCBI_GenBank
Match: gi|552938892|gb|ESA21986.1| (hypothetical protein GLOINDRAFT_74133, partial [Rhizophagus irregularis DAOM 181602])

HSP 1 Score: 108.227 bits (269), Expect = 1.417e-27
Identity = 53/119 (44.54%), Postives = 83/119 (69.75%), Query Frame = 0
Query:    1 MMKVCDTQIGGGELYVTKGLSGGERKRLNIATELLANPSILLLDEPTSGLDSVMGELICLLLNDLARREPKRTVVVAVHSPPSRIFTLFSLLTVLTSNGELAYFGERSGVLPFVESLGW 119
            + K  +T IG    + T G+SGGERKR+NIA+ELL +PS++LLDEPTSGLDS +   I  +L + A ++ K+T+++ VH P S++F +F  L V+ ++G + YFGER+G + ++   G+
Sbjct:   27 LTKCANTIIGD---HKTHGVSGGERKRVNIASELLTDPSVILLDEPTSGLDSSLALEITKILKEFAVKQ-KKTIIMVVHQPSSQVFEIFDKLMVM-ADGHMVYFGERAGAVDYLADQGY 140          
BLAST of EWM24935.1 vs. NCBI_GenBank
Match: gi|552912525|gb|ERZ97960.1| (hypothetical protein GLOINDRAFT_70845, partial [Rhizophagus irregularis DAOM 181602])

HSP 1 Score: 107.457 bits (267), Expect = 1.353e-26
Identity = 53/119 (44.54%), Postives = 83/119 (69.75%), Query Frame = 0
Query:    1 MMKVCDTQIGGGELYVTKGLSGGERKRLNIATELLANPSILLLDEPTSGLDSVMGELICLLLNDLARREPKRTVVVAVHSPPSRIFTLFSLLTVLTSNGELAYFGERSGVLPFVESLGW 119
            + K  +T IG    ++T+G+SGGERKR NIA+ELL +PS++LLDEPTSGLDS +   I  +L + A ++ K+T+++ VH P S +F  F  L V+ ++G + YFGER+G++ ++   G+
Sbjct:   88 LTKCANTIIGD---HMTRGVSGGERKRANIASELLTDPSVILLDEPTSGLDSSLALEITKILKEFAVKQ-KKTIIMVVHQPSSEVFETFDKLMVM-ADGHMVYFGERAGLVDYLADQGY 201          
BLAST of EWM24935.1 vs. NCBI_GenBank
Match: gi|828230715|ref|XP_012564949.1| (PREDICTED: ABC transporter G family member 22-like, partial [Hydra vulgaris])

HSP 1 Score: 108.612 bits (270), Expect = 1.972e-25
Identity = 54/117 (46.15%), Postives = 79/117 (67.52%), Query Frame = 0
Query:    2 MKVCDTQIGGGELYVTKGLSGGERKRLNIATELLANPSILLLDEPTSGLDSVMGELICLLLNDLARREPKRTVVVAVHSPPSRIFTLFSLLTVLTSNGELAYFGERSGVLPFVESLG 118
            ++ C+  + GG+ Y TKG SGGERKR +IA EL+ NP+ ++LDEPT+GLDS     +   L +LA +E KR + + +H P S++F +F  L +L  NG + +FG+ S VLPF ES+G
Sbjct:  136 LRKCENTVLGGDFY-TKGCSGGERKRCSIAVELITNPACIILDEPTTGLDSSTAFNLMNTLKNLAEKE-KRAICLTIHQPSSQVFHMFDKLMLLC-NGTVMFFGKNSYVLPFFESIG 249          
BLAST of EWM24935.1 vs. NCBI_GenBank
Match: gi|595483284|gb|EXX70709.1| (putative ATP-dependent permease ADP1 [Rhizophagus irregularis DAOM 197198w])

HSP 1 Score: 109.383 bits (272), Expect = 2.146e-25
Identity = 53/119 (44.54%), Postives = 85/119 (71.43%), Query Frame = 0
Query:    1 MMKVCDTQIGGGELYVTKGLSGGERKRLNIATELLANPSILLLDEPTSGLDSVMGELICLLLNDLARREPKRTVVVAVHSPPSRIFTLFSLLTVLTSNGELAYFGERSGVLPFVESLGW 119
            + K  +T IG    ++T+G+SGGERKR+NIA+ELL +PS++LLDEPTSGLDS +   I  +L + A ++ K+T+++ +H P S++F  F  L +L ++G + YFGER+GV+ ++   G+
Sbjct:  216 LTKCANTIIGD---HITRGVSGGERKRVNIASELLTDPSVILLDEPTSGLDSSLALEITTILKEFAVKQ-KKTIIMVIHQPSSQVFESFDKL-MLMADGHMVYFGERAGVVDYLADQGY 329          
BLAST of EWM24935.1 vs. NCBI_GenBank
Match: gi|595451530|gb|EXX59291.1| (putative ATP-dependent permease ADP1 [Rhizophagus irregularis DAOM 197198w])

HSP 1 Score: 105.916 bits (263), Expect = 3.902e-25
Identity = 53/119 (44.54%), Postives = 82/119 (68.91%), Query Frame = 0
Query:    1 MMKVCDTQIGGGELYVTKGLSGGERKRLNIATELLANPSILLLDEPTSGLDSVMGELICLLLNDLARREPKRTVVVAVHSPPSRIFTLFSLLTVLTSNGELAYFGERSGVLPFVESLGW 119
            + K  +T IG    Y+T+G+SGGERKR NIA+ELL + S++LLDEPTSGLDS +   I  +L + A ++ K+T+++ VH P S +F  F  L V+ ++G + YFGER+G++ ++   G+
Sbjct:  199 LTKCANTIIGD---YMTRGVSGGERKRANIASELLTDSSVILLDEPTSGLDSSLALEITKILKEFAVKQ-KKTIIMVVHQPSSEVFETFDKLMVM-ADGHMVYFGERAGLVDYLADQGY 312          
BLAST of EWM24935.1 vs. NCBI_GenBank
Match: gi|952520778|gb|KRT81082.1| (ABC transporter ATP-binding protein, partial [Oryctes borbonicus])

HSP 1 Score: 102.064 bits (253), Expect = 5.299e-25
Identity = 59/113 (52.21%), Postives = 73/113 (64.60%), Query Frame = 0
Query:    6 DTQIGGGELYVTKGLSGGERKRLNIATELLANPSILLLDEPTSGLDSVMGELICLLLNDLARREPKRTVVVAVHSPPSRIFTLFSLLTVLTSNGELAYFGERSGVLPFVESLG 118
            DT IG    Y+ +GLSGGE+KR NIA ELL NPS++LLDEPTSGLDS     +   L   A  E K T+VV +H P S+IF L   L +L S G+ AYFG+ S V+ F  S+G
Sbjct:   57 DTIIGD---YIKRGLSGGEKKRANIACELLTNPSLMLLDEPTSGLDSYAAHSLMSTLKKYAASEGK-TIVVTLHQPSSQIFHLCDKL-LLLSGGQTAYFGDTSRVVDFFSSIG 164          
The following BLAST results are available for this feature:
BLAST of EWM24935.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106565|gb|EWM24935.1|1.050e-79100.00atp-binding cassette [Nannochloropsis gaditana][more]
gi|553191705|ref|XP_005855437.1|1.354e-4865.55atp-binding cassette sub-family g member 2, partia... [more]
gi|585106124|gb|EWM24607.1|2.585e-4465.55abc subfamily abcg [Nannochloropsis gaditana][more]
gi|585109183|gb|EWM27013.1|1.035e-3150.82white [Nannochloropsis gaditana][more]
gi|552938892|gb|ESA21986.1|1.417e-2744.54hypothetical protein GLOINDRAFT_74133, partial [Rh... [more]
gi|552912525|gb|ERZ97960.1|1.353e-2644.54hypothetical protein GLOINDRAFT_70845, partial [Rh... [more]
gi|828230715|ref|XP_012564949.1|1.972e-2546.15PREDICTED: ABC transporter G family member 22-like... [more]
gi|595483284|gb|EXX70709.1|2.146e-2544.54putative ATP-dependent permease ADP1 [Rhizophagus ... [more]
gi|595451530|gb|EXX59291.1|3.902e-2544.54putative ATP-dependent permease ADP1 [Rhizophagus ... [more]
gi|952520778|gb|KRT81082.1|5.299e-2552.21ABC transporter ATP-binding protein, partial [Oryc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5742rna5742Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications