EWM24980.1, cds5685 (CDS) Nannochloropsis gaditana

Overview
NameEWM24980.1
Unique Namecds5685
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:615576..620464 +
Alignment locationCM002466.1:620544..620674 +
Alignment locationCM002466.1:620716..620798 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24980.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100122g13.3567.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:615576..620464 +
CM002466.1supercontigCM002466.1:620544..620674 +
CM002466.1supercontigCM002466.1:620716..620798 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM24980.1 vs. NCBI_GenBank
Match: gi|585106613|gb|EWM24980.1| (hypothetical protein Naga_100122g13 [Nannochloropsis gaditana])

HSP 1 Score: 3520.71 bits (9128), Expect = 0.000e+0
Identity = 1700/1700 (100.00%), Postives = 1700/1700 (100.00%), Query Frame = 0 
Query:    1 MGRRQPQHPPAPTAQAVAATRAVEESSGNKPRASSRGPTPTVLTTNYTGSSGTASISRKRNTNAIGGIEGVAGGTQKNLSVSIMNGSEDGADASPRFMLDSKRHAFFPSDAYLHESLRSSPRHNRRLIRFEDTERCFWELVFTRHDRLRHLLEDVCLSSGSRARQMARIHCATLVNDLVFVGLDVHENVLAFHRTERLTAFLEELEGRVGPNPSVTAVEEFVRNCRPDFSPYLCAPPQEKGDAEYVLLGERGSDRWLELRASVCADCYATHLTNGLAVDVTGLKYNSDIQELYARLEDLVPQCKSADVTLRLLFHDGADALAEVTVARGWNREEGRQEWVCVPRYAAGGTRVDPHIFDPGDTLCLPQLADLGMFLPTTEVVICTRNCLHSTLGKAASPTGTGSILAPRAHDDFPYAASSLEKSLGIPQGNPPGSISKPPKRTPSNKRVTAKPKKPGSTGENDGYGPDLAPLPPLTKVSSLFPSDCPQTSLDAFPFPEIEPGPVHFAGGGGGKTGKSKPTKRYTCCAPGCLQSATFKPADEPRSKNNMVCVRHARKGMSCIKGPLCDHPDCVHEEVSTVPRRATFGFPAERQRRCGKHKLAGMLYATELVKKRHASAQKRNGGTPGAKKKAPGLTTKSARARAASRHPYMDEDEDEDEDGGCTGQEEAEYEVAATEDDREDDFLPKPSKRRRNAPSPTAAASPKVASGADRKHDEPTNSAFPSGLAAAAAAAAAGCVALTMTEADEEREQQVDVGPPLTDDAQQQMQAQDHPQHHGYMYPSNHFQTLSQQGPPSINHLLDGGAPQSFSDLANHPSVSLAALGEQANEAFRFFMSKGSSGDMNFPVQPSPATAAAAAAIAAALPPHMLMPSAPMLQPLPPGAMPSYPPQLSSPSREAATTATESGADAQQDQAVRFDMLVEAAASGKGRAKDQKAGERPNVYLSSEQGMETQSQPTQLHSQYGTHLLNRQSAYSIQHQQPQETMQNQHQQHEGSPPSHDALGLTQSRALYQAPQQQQSQLQLLIQRAQQQQHAQQHGQQYHYHNDALNQQQQLEQYPSDQLQRQQQHLSHVQVDYGWGDLGSPSPGLCLGGMEEAFGRSPYGGTTPKAYQQLMHLVSLGGDYSNQTANTGSGGMGGELDMRSKYDHGLRSVWAGDVAVVIVLRSPQGSLSGLASLTKDVGFEPADEGIYFVKNVTTCDQSARNKGDRECFRRELHRLSDCLLPAPASNFQSAQSQLVSTVSGRTGTAKESQLSFYIDQHKQALGLGEDAYLSEQMETGMGRKRPARRLILTWDPSGGAEIDVEFSNRSDRLKVTEIDGNVVLRPLGPTGPWLENALTDFARQGLAFCAADLMALVLGAARIRRDAKLSSLGGKTAFPSKEGAQKEPDESLIREVEASYNLDGCLSPQFDLPLDVLEGPLTALVSDPSAAFYVVSNFLTIRVGAQGCPRFTPASFIHFCNCFLSNRDPFGTAFRVWCEVTSVPSVEFRPNQSGQADEPVSAPSQVRRAATSSTSTGQDCFLHLSDEAPGLILNWCFPRTTLELPAKSGTAKGVVLGWNDRGRDSRLTWEVQEPRLQTLLTSHARSLGFDPTTLAGLAGAAQDLTKGCGEKSGKFMETILEIGQKQPSRKYIGAKSSRDSRSVIRGLKVRWRFKRSPMWTFCPRDGAANGRECLRVRTCVSAATMYVYIHVGRRGQASITSLME 1700
            MGRRQPQHPPAPTAQAVAATRAVEESSGNKPRASSRGPTPTVLTTNYTGSSGTASISRKRNTNAIGGIEGVAGGTQKNLSVSIMNGSEDGADASPRFMLDSKRHAFFPSDAYLHESLRSSPRHNRRLIRFEDTERCFWELVFTRHDRLRHLLEDVCLSSGSRARQMARIHCATLVNDLVFVGLDVHENVLAFHRTERLTAFLEELEGRVGPNPSVTAVEEFVRNCRPDFSPYLCAPPQEKGDAEYVLLGERGSDRWLELRASVCADCYATHLTNGLAVDVTGLKYNSDIQELYARLEDLVPQCKSADVTLRLLFHDGADALAEVTVARGWNREEGRQEWVCVPRYAAGGTRVDPHIFDPGDTLCLPQLADLGMFLPTTEVVICTRNCLHSTLGKAASPTGTGSILAPRAHDDFPYAASSLEKSLGIPQGNPPGSISKPPKRTPSNKRVTAKPKKPGSTGENDGYGPDLAPLPPLTKVSSLFPSDCPQTSLDAFPFPEIEPGPVHFAGGGGGKTGKSKPTKRYTCCAPGCLQSATFKPADEPRSKNNMVCVRHARKGMSCIKGPLCDHPDCVHEEVSTVPRRATFGFPAERQRRCGKHKLAGMLYATELVKKRHASAQKRNGGTPGAKKKAPGLTTKSARARAASRHPYMDEDEDEDEDGGCTGQEEAEYEVAATEDDREDDFLPKPSKRRRNAPSPTAAASPKVASGADRKHDEPTNSAFPSGLAAAAAAAAAGCVALTMTEADEEREQQVDVGPPLTDDAQQQMQAQDHPQHHGYMYPSNHFQTLSQQGPPSINHLLDGGAPQSFSDLANHPSVSLAALGEQANEAFRFFMSKGSSGDMNFPVQPSPATAAAAAAIAAALPPHMLMPSAPMLQPLPPGAMPSYPPQLSSPSREAATTATESGADAQQDQAVRFDMLVEAAASGKGRAKDQKAGERPNVYLSSEQGMETQSQPTQLHSQYGTHLLNRQSAYSIQHQQPQETMQNQHQQHEGSPPSHDALGLTQSRALYQAPQQQQSQLQLLIQRAQQQQHAQQHGQQYHYHNDALNQQQQLEQYPSDQLQRQQQHLSHVQVDYGWGDLGSPSPGLCLGGMEEAFGRSPYGGTTPKAYQQLMHLVSLGGDYSNQTANTGSGGMGGELDMRSKYDHGLRSVWAGDVAVVIVLRSPQGSLSGLASLTKDVGFEPADEGIYFVKNVTTCDQSARNKGDRECFRRELHRLSDCLLPAPASNFQSAQSQLVSTVSGRTGTAKESQLSFYIDQHKQALGLGEDAYLSEQMETGMGRKRPARRLILTWDPSGGAEIDVEFSNRSDRLKVTEIDGNVVLRPLGPTGPWLENALTDFARQGLAFCAADLMALVLGAARIRRDAKLSSLGGKTAFPSKEGAQKEPDESLIREVEASYNLDGCLSPQFDLPLDVLEGPLTALVSDPSAAFYVVSNFLTIRVGAQGCPRFTPASFIHFCNCFLSNRDPFGTAFRVWCEVTSVPSVEFRPNQSGQADEPVSAPSQVRRAATSSTSTGQDCFLHLSDEAPGLILNWCFPRTTLELPAKSGTAKGVVLGWNDRGRDSRLTWEVQEPRLQTLLTSHARSLGFDPTTLAGLAGAAQDLTKGCGEKSGKFMETILEIGQKQPSRKYIGAKSSRDSRSVIRGLKVRWRFKRSPMWTFCPRDGAANGRECLRVRTCVSAATMYVYIHVGRRGQASITSLME
Sbjct:    1 MGRRQPQHPPAPTAQAVAATRAVEESSGNKPRASSRGPTPTVLTTNYTGSSGTASISRKRNTNAIGGIEGVAGGTQKNLSVSIMNGSEDGADASPRFMLDSKRHAFFPSDAYLHESLRSSPRHNRRLIRFEDTERCFWELVFTRHDRLRHLLEDVCLSSGSRARQMARIHCATLVNDLVFVGLDVHENVLAFHRTERLTAFLEELEGRVGPNPSVTAVEEFVRNCRPDFSPYLCAPPQEKGDAEYVLLGERGSDRWLELRASVCADCYATHLTNGLAVDVTGLKYNSDIQELYARLEDLVPQCKSADVTLRLLFHDGADALAEVTVARGWNREEGRQEWVCVPRYAAGGTRVDPHIFDPGDTLCLPQLADLGMFLPTTEVVICTRNCLHSTLGKAASPTGTGSILAPRAHDDFPYAASSLEKSLGIPQGNPPGSISKPPKRTPSNKRVTAKPKKPGSTGENDGYGPDLAPLPPLTKVSSLFPSDCPQTSLDAFPFPEIEPGPVHFAGGGGGKTGKSKPTKRYTCCAPGCLQSATFKPADEPRSKNNMVCVRHARKGMSCIKGPLCDHPDCVHEEVSTVPRRATFGFPAERQRRCGKHKLAGMLYATELVKKRHASAQKRNGGTPGAKKKAPGLTTKSARARAASRHPYMDEDEDEDEDGGCTGQEEAEYEVAATEDDREDDFLPKPSKRRRNAPSPTAAASPKVASGADRKHDEPTNSAFPSGLAAAAAAAAAGCVALTMTEADEEREQQVDVGPPLTDDAQQQMQAQDHPQHHGYMYPSNHFQTLSQQGPPSINHLLDGGAPQSFSDLANHPSVSLAALGEQANEAFRFFMSKGSSGDMNFPVQPSPATAAAAAAIAAALPPHMLMPSAPMLQPLPPGAMPSYPPQLSSPSREAATTATESGADAQQDQAVRFDMLVEAAASGKGRAKDQKAGERPNVYLSSEQGMETQSQPTQLHSQYGTHLLNRQSAYSIQHQQPQETMQNQHQQHEGSPPSHDALGLTQSRALYQAPQQQQSQLQLLIQRAQQQQHAQQHGQQYHYHNDALNQQQQLEQYPSDQLQRQQQHLSHVQVDYGWGDLGSPSPGLCLGGMEEAFGRSPYGGTTPKAYQQLMHLVSLGGDYSNQTANTGSGGMGGELDMRSKYDHGLRSVWAGDVAVVIVLRSPQGSLSGLASLTKDVGFEPADEGIYFVKNVTTCDQSARNKGDRECFRRELHRLSDCLLPAPASNFQSAQSQLVSTVSGRTGTAKESQLSFYIDQHKQALGLGEDAYLSEQMETGMGRKRPARRLILTWDPSGGAEIDVEFSNRSDRLKVTEIDGNVVLRPLGPTGPWLENALTDFARQGLAFCAADLMALVLGAARIRRDAKLSSLGGKTAFPSKEGAQKEPDESLIREVEASYNLDGCLSPQFDLPLDVLEGPLTALVSDPSAAFYVVSNFLTIRVGAQGCPRFTPASFIHFCNCFLSNRDPFGTAFRVWCEVTSVPSVEFRPNQSGQADEPVSAPSQVRRAATSSTSTGQDCFLHLSDEAPGLILNWCFPRTTLELPAKSGTAKGVVLGWNDRGRDSRLTWEVQEPRLQTLLTSHARSLGFDPTTLAGLAGAAQDLTKGCGEKSGKFMETILEIGQKQPSRKYIGAKSSRDSRSVIRGLKVRWRFKRSPMWTFCPRDGAANGRECLRVRTCVSAATMYVYIHVGRRGQASITSLME 1700
The following BLAST results are available for this feature:
BLAST of EWM24980.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585106613|gb|EWM24980.1|0.000e+0100.00hypothetical protein Naga_100122g13 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5700rna5700Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications