EWM25014.1, cds5669 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM25014.1 vs. NCBI_GenBank
Match: gi|585106649|gb|EWM25014.1| (hypothetical protein Naga_100068g20 [Nannochloropsis gaditana]) HSP 1 Score: 1511.51 bits (3912), Expect = 0.000e+0 Identity = 736/736 (100.00%), Postives = 736/736 (100.00%), Query Frame = 0
Query: 1 MSATFPVILSTGAGGQDGSCPSPPSASASSSTDGLSNAPAITSPVMVLETITEKTNGNAPLDSVLEGLLSLRSPALPLMPGPMVILRCGNMEQVTVPMTNSSGNGGVEESGGPVSASAPILMTTAPADAGLAQAFRQSDATTADSDQNFYLSKDPSILAAPFPPPFPPPLSSPPSPLPTASFPRPALPRQTQPTFLPHPEPASPMQITVLPSRNMKRTNTDVEDPSPSPRPPPHFPFFSSPPPRLPPFSATPHSHFYGHLIAPDNAAFMTHAAAGAAESGKIQAEKLLVSIPTESLDPSSVIASDPAQARRLALTAARAASISTSLRESGGEEGEEGEEAGSRQIINQQVALVPSQTSTILSQNQESRVKNLEKIPPEAVRALEATLSAIPAWGVRITKEKLEALGGRVLGSPVLMEGERSEQVVDYAPKNYHIQCRHCGKNFLGKNALRNFELHAIFWTLYRSHPAIVRVGHAAASAAAAAMGLQWARVSNAEEGGTNAGMGCAHGDMPGSMSESGGLACSSDANAGKQNMDGAVRAAAQVFEGHHQLNYPCNSVARDVVVFMEARKPVLCNNQKKIFMLRGNLHHDTSLFQNRAWLQIPASKTWESCKLADPTSLQDVLWCRGGKALEAYETLRSHIFAWHDSGVFTSCSHCKRVYQNTRAFLGHGCVKKSPIGMPADAQKDDTAVASCSQSMMSFLEVSPDFAQLFYQLRSLPSERREEVFDRVSKRLRSTNV 736
MSATFPVILSTGAGGQDGSCPSPPSASASSSTDGLSNAPAITSPVMVLETITEKTNGNAPLDSVLEGLLSLRSPALPLMPGPMVILRCGNMEQVTVPMTNSSGNGGVEESGGPVSASAPILMTTAPADAGLAQAFRQSDATTADSDQNFYLSKDPSILAAPFPPPFPPPLSSPPSPLPTASFPRPALPRQTQPTFLPHPEPASPMQITVLPSRNMKRTNTDVEDPSPSPRPPPHFPFFSSPPPRLPPFSATPHSHFYGHLIAPDNAAFMTHAAAGAAESGKIQAEKLLVSIPTESLDPSSVIASDPAQARRLALTAARAASISTSLRESGGEEGEEGEEAGSRQIINQQVALVPSQTSTILSQNQESRVKNLEKIPPEAVRALEATLSAIPAWGVRITKEKLEALGGRVLGSPVLMEGERSEQVVDYAPKNYHIQCRHCGKNFLGKNALRNFELHAIFWTLYRSHPAIVRVGHAAASAAAAAMGLQWARVSNAEEGGTNAGMGCAHGDMPGSMSESGGLACSSDANAGKQNMDGAVRAAAQVFEGHHQLNYPCNSVARDVVVFMEARKPVLCNNQKKIFMLRGNLHHDTSLFQNRAWLQIPASKTWESCKLADPTSLQDVLWCRGGKALEAYETLRSHIFAWHDSGVFTSCSHCKRVYQNTRAFLGHGCVKKSPIGMPADAQKDDTAVASCSQSMMSFLEVSPDFAQLFYQLRSLPSERREEVFDRVSKRLRSTNV
Sbjct: 1 MSATFPVILSTGAGGQDGSCPSPPSASASSSTDGLSNAPAITSPVMVLETITEKTNGNAPLDSVLEGLLSLRSPALPLMPGPMVILRCGNMEQVTVPMTNSSGNGGVEESGGPVSASAPILMTTAPADAGLAQAFRQSDATTADSDQNFYLSKDPSILAAPFPPPFPPPLSSPPSPLPTASFPRPALPRQTQPTFLPHPEPASPMQITVLPSRNMKRTNTDVEDPSPSPRPPPHFPFFSSPPPRLPPFSATPHSHFYGHLIAPDNAAFMTHAAAGAAESGKIQAEKLLVSIPTESLDPSSVIASDPAQARRLALTAARAASISTSLRESGGEEGEEGEEAGSRQIINQQVALVPSQTSTILSQNQESRVKNLEKIPPEAVRALEATLSAIPAWGVRITKEKLEALGGRVLGSPVLMEGERSEQVVDYAPKNYHIQCRHCGKNFLGKNALRNFELHAIFWTLYRSHPAIVRVGHAAASAAAAAMGLQWARVSNAEEGGTNAGMGCAHGDMPGSMSESGGLACSSDANAGKQNMDGAVRAAAQVFEGHHQLNYPCNSVARDVVVFMEARKPVLCNNQKKIFMLRGNLHHDTSLFQNRAWLQIPASKTWESCKLADPTSLQDVLWCRGGKALEAYETLRSHIFAWHDSGVFTSCSHCKRVYQNTRAFLGHGCVKKSPIGMPADAQKDDTAVASCSQSMMSFLEVSPDFAQLFYQLRSLPSERREEVFDRVSKRLRSTNV 736
BLAST of EWM25014.1 vs. NCBI_GenBank
Match: gi|585104187|gb|EWM23237.1| (hypothetical protein Naga_100917g1 [Nannochloropsis gaditana]) HSP 1 Score: 125.946 bits (315), Expect = 6.516e-27 Identity = 59/105 (56.19%), Postives = 77/105 (73.33%), Query Frame = 0
Query: 367 SRVKNLEKIPPEAVRALEATLSAIPAWGVRITKEKLEALGGRVL--GSPVLMEGERSEQVVDYAPKNYHIQCRHCGKNFLGKNALRNFELHAIFWTLYRSHPAIV 469
SR K L ++P ++AL+ LS +PAW RITKEKLE LGG V+ SPVL R++ + YAPK++HI+C+ C K+F GKNALRNFELHAIFW LY +HPA++
Sbjct: 320 SRSKKLTEVPSLVLQALDQKLSQVPAWDERITKEKLEQLGGVVMVDSSPVLSSAVRNDAIHKYAPKDFHIKCQFCLKSFNGKNALRNFELHAIFWELYLAHPALL 424 HSP 2 Score: 93.9745 bits (232), Expect = 1.592e-16 Identity = 42/67 (62.69%), Postives = 55/67 (82.09%), Query Frame = 0
Query: 535 AVRAAAQVFEGHHQLNYPCNSVARDVVVFMEARKPVLCNNQKKIFMLRGNLHHDTSLFQNRAWLQIP 601
+ +A ++V + H L YPCNS+ARDVVV+ME+RKPVLCNNQ+K++ L+G L HDT+ FQ RAWLQIP
Sbjct: 427 STQADSKVEKEHGGL-YPCNSIARDVVVYMESRKPVLCNNQRKVWKLQGELFHDTNPFQGRAWLQIP 492
BLAST of EWM25014.1 vs. NCBI_GenBank
Match: gi|553193075|ref|XP_005855705.1| (hypothetical protein NGA_0645600, partial [Nannochloropsis gaditana CCMP526] >gi|422293357|gb|EKU20657.1| hypothetical protein NGA_0645600, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 71.633 bits (174), Expect = 1.458e-9 Identity = 44/110 (40.00%), Postives = 63/110 (57.27%), Query Frame = 0
Query: 328 ESGGEEGEEGEEAGSRQIINQQVALVPSQTSTILSQNQESRVKNLEKIPPEAVRALEATLSAIPAWGVRITKEKLEALGGRVL--GSPVLMEGERSEQVVDYAPKNYHIQ 435
+ GG++ +G A + + ++ L + T Q QE R+ NLEK AL+ LS +PAW RITKEKLE LGG V+ SPVL R++ + YAPK++HI+
Sbjct: 295 KGGGDDETKGPNASTAEWSSRSKKLTEATT-----QAQELRLSNLEK-------ALDQKLSQVPAWDERITKEKLEQLGGVVMVDSSPVLSSAVRNDAIHKYAPKDFHIK 392 The following BLAST results are available for this feature:
BLAST of EWM25014.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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