EWM25014.1, cds5669 (CDS) Nannochloropsis gaditana

Overview
NameEWM25014.1
Unique Namecds5669
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:577681..577781 +
Alignment locationCM002466.1:578007..579254 +
Alignment locationCM002466.1:579384..579863 +
Alignment locationCM002466.1:580007..580180 +
Alignment locationCM002466.1:580349..580556 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25014.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100068g20.2438.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:577681..577781 +
CM002466.1supercontigCM002466.1:578007..579254 +
CM002466.1supercontigCM002466.1:579384..579863 +
CM002466.1supercontigCM002466.1:580007..580180 +
CM002466.1supercontigCM002466.1:580349..580556 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM25014.1 vs. NCBI_GenBank
Match: gi|585106649|gb|EWM25014.1| (hypothetical protein Naga_100068g20 [Nannochloropsis gaditana])

HSP 1 Score: 1511.51 bits (3912), Expect = 0.000e+0
Identity = 736/736 (100.00%), Postives = 736/736 (100.00%), Query Frame = 0
Query:    1 MSATFPVILSTGAGGQDGSCPSPPSASASSSTDGLSNAPAITSPVMVLETITEKTNGNAPLDSVLEGLLSLRSPALPLMPGPMVILRCGNMEQVTVPMTNSSGNGGVEESGGPVSASAPILMTTAPADAGLAQAFRQSDATTADSDQNFYLSKDPSILAAPFPPPFPPPLSSPPSPLPTASFPRPALPRQTQPTFLPHPEPASPMQITVLPSRNMKRTNTDVEDPSPSPRPPPHFPFFSSPPPRLPPFSATPHSHFYGHLIAPDNAAFMTHAAAGAAESGKIQAEKLLVSIPTESLDPSSVIASDPAQARRLALTAARAASISTSLRESGGEEGEEGEEAGSRQIINQQVALVPSQTSTILSQNQESRVKNLEKIPPEAVRALEATLSAIPAWGVRITKEKLEALGGRVLGSPVLMEGERSEQVVDYAPKNYHIQCRHCGKNFLGKNALRNFELHAIFWTLYRSHPAIVRVGHAAASAAAAAMGLQWARVSNAEEGGTNAGMGCAHGDMPGSMSESGGLACSSDANAGKQNMDGAVRAAAQVFEGHHQLNYPCNSVARDVVVFMEARKPVLCNNQKKIFMLRGNLHHDTSLFQNRAWLQIPASKTWESCKLADPTSLQDVLWCRGGKALEAYETLRSHIFAWHDSGVFTSCSHCKRVYQNTRAFLGHGCVKKSPIGMPADAQKDDTAVASCSQSMMSFLEVSPDFAQLFYQLRSLPSERREEVFDRVSKRLRSTNV 736
            MSATFPVILSTGAGGQDGSCPSPPSASASSSTDGLSNAPAITSPVMVLETITEKTNGNAPLDSVLEGLLSLRSPALPLMPGPMVILRCGNMEQVTVPMTNSSGNGGVEESGGPVSASAPILMTTAPADAGLAQAFRQSDATTADSDQNFYLSKDPSILAAPFPPPFPPPLSSPPSPLPTASFPRPALPRQTQPTFLPHPEPASPMQITVLPSRNMKRTNTDVEDPSPSPRPPPHFPFFSSPPPRLPPFSATPHSHFYGHLIAPDNAAFMTHAAAGAAESGKIQAEKLLVSIPTESLDPSSVIASDPAQARRLALTAARAASISTSLRESGGEEGEEGEEAGSRQIINQQVALVPSQTSTILSQNQESRVKNLEKIPPEAVRALEATLSAIPAWGVRITKEKLEALGGRVLGSPVLMEGERSEQVVDYAPKNYHIQCRHCGKNFLGKNALRNFELHAIFWTLYRSHPAIVRVGHAAASAAAAAMGLQWARVSNAEEGGTNAGMGCAHGDMPGSMSESGGLACSSDANAGKQNMDGAVRAAAQVFEGHHQLNYPCNSVARDVVVFMEARKPVLCNNQKKIFMLRGNLHHDTSLFQNRAWLQIPASKTWESCKLADPTSLQDVLWCRGGKALEAYETLRSHIFAWHDSGVFTSCSHCKRVYQNTRAFLGHGCVKKSPIGMPADAQKDDTAVASCSQSMMSFLEVSPDFAQLFYQLRSLPSERREEVFDRVSKRLRSTNV
Sbjct:    1 MSATFPVILSTGAGGQDGSCPSPPSASASSSTDGLSNAPAITSPVMVLETITEKTNGNAPLDSVLEGLLSLRSPALPLMPGPMVILRCGNMEQVTVPMTNSSGNGGVEESGGPVSASAPILMTTAPADAGLAQAFRQSDATTADSDQNFYLSKDPSILAAPFPPPFPPPLSSPPSPLPTASFPRPALPRQTQPTFLPHPEPASPMQITVLPSRNMKRTNTDVEDPSPSPRPPPHFPFFSSPPPRLPPFSATPHSHFYGHLIAPDNAAFMTHAAAGAAESGKIQAEKLLVSIPTESLDPSSVIASDPAQARRLALTAARAASISTSLRESGGEEGEEGEEAGSRQIINQQVALVPSQTSTILSQNQESRVKNLEKIPPEAVRALEATLSAIPAWGVRITKEKLEALGGRVLGSPVLMEGERSEQVVDYAPKNYHIQCRHCGKNFLGKNALRNFELHAIFWTLYRSHPAIVRVGHAAASAAAAAMGLQWARVSNAEEGGTNAGMGCAHGDMPGSMSESGGLACSSDANAGKQNMDGAVRAAAQVFEGHHQLNYPCNSVARDVVVFMEARKPVLCNNQKKIFMLRGNLHHDTSLFQNRAWLQIPASKTWESCKLADPTSLQDVLWCRGGKALEAYETLRSHIFAWHDSGVFTSCSHCKRVYQNTRAFLGHGCVKKSPIGMPADAQKDDTAVASCSQSMMSFLEVSPDFAQLFYQLRSLPSERREEVFDRVSKRLRSTNV 736          
BLAST of EWM25014.1 vs. NCBI_GenBank
Match: gi|585104187|gb|EWM23237.1| (hypothetical protein Naga_100917g1 [Nannochloropsis gaditana])

HSP 1 Score: 125.946 bits (315), Expect = 6.516e-27
Identity = 59/105 (56.19%), Postives = 77/105 (73.33%), Query Frame = 0
Query:  367 SRVKNLEKIPPEAVRALEATLSAIPAWGVRITKEKLEALGGRVL--GSPVLMEGERSEQVVDYAPKNYHIQCRHCGKNFLGKNALRNFELHAIFWTLYRSHPAIV 469
            SR K L ++P   ++AL+  LS +PAW  RITKEKLE LGG V+   SPVL    R++ +  YAPK++HI+C+ C K+F GKNALRNFELHAIFW LY +HPA++
Sbjct:  320 SRSKKLTEVPSLVLQALDQKLSQVPAWDERITKEKLEQLGGVVMVDSSPVLSSAVRNDAIHKYAPKDFHIKCQFCLKSFNGKNALRNFELHAIFWELYLAHPALL 424          

HSP 2 Score: 93.9745 bits (232), Expect = 1.592e-16
Identity = 42/67 (62.69%), Postives = 55/67 (82.09%), Query Frame = 0
Query:  535 AVRAAAQVFEGHHQLNYPCNSVARDVVVFMEARKPVLCNNQKKIFMLRGNLHHDTSLFQNRAWLQIP 601
            + +A ++V + H  L YPCNS+ARDVVV+ME+RKPVLCNNQ+K++ L+G L HDT+ FQ RAWLQIP
Sbjct:  427 STQADSKVEKEHGGL-YPCNSIARDVVVYMESRKPVLCNNQRKVWKLQGELFHDTNPFQGRAWLQIP 492          
BLAST of EWM25014.1 vs. NCBI_GenBank
Match: gi|553193075|ref|XP_005855705.1| (hypothetical protein NGA_0645600, partial [Nannochloropsis gaditana CCMP526] >gi|422293357|gb|EKU20657.1| hypothetical protein NGA_0645600, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 71.633 bits (174), Expect = 1.458e-9
Identity = 44/110 (40.00%), Postives = 63/110 (57.27%), Query Frame = 0
Query:  328 ESGGEEGEEGEEAGSRQIINQQVALVPSQTSTILSQNQESRVKNLEKIPPEAVRALEATLSAIPAWGVRITKEKLEALGGRVL--GSPVLMEGERSEQVVDYAPKNYHIQ 435
            + GG++  +G  A + +  ++   L  + T     Q QE R+ NLEK       AL+  LS +PAW  RITKEKLE LGG V+   SPVL    R++ +  YAPK++HI+
Sbjct:  295 KGGGDDETKGPNASTAEWSSRSKKLTEATT-----QAQELRLSNLEK-------ALDQKLSQVPAWDERITKEKLEQLGGVVMVDSSPVLSSAVRNDAIHKYAPKDFHIK 392          
The following BLAST results are available for this feature:
BLAST of EWM25014.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585106649|gb|EWM25014.1|0.000e+0100.00hypothetical protein Naga_100068g20 [Nannochlorops... [more]
gi|585104187|gb|EWM23237.1|6.516e-2756.19hypothetical protein Naga_100917g1 [Nannochloropsi... [more]
gi|553193075|ref|XP_005855705.1|1.458e-940.00hypothetical protein NGA_0645600, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5684rna5684Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications