EWM30617.1, cds56 (CDS) Nannochloropsis gaditana

Overview
NameEWM30617.1
Unique Namecds56
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:165582..165903 -
Alignment locationCM002455.1:165284..165450 -
Alignment locationCM002455.1:164874..164993 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30617.1
ProductFibrillarin
Partialtrue
Orig transcript idgnl|cribi|Naga_101013g2.4.mrna
GbkeyCDS
End range.
End range165903
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:165582..165903 -
CM002455.1supercontigCM002455.1:165284..165450 -
CM002455.1supercontigCM002455.1:164874..164993 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
GO:0005730nucleolus
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006464cellular protein modification process
GO:0016043cellular component organization
GO:0008033tRNA processing
GO:0006364rRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0008168methyltransferase activity
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
IPR000692Fibrillarin
Homology
BLAST of EWM30617.1 vs. NCBI_GenBank
Match: gi|585113291|gb|EWM30617.1| (Fibrillarin, partial [Nannochloropsis gaditana])

HSP 1 Score: 417.927 bits (1073), Expect = 5.523e-148
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0
Query:    1 GTAPGPEGVATKLEYRVWNPFRSKLAAAILGGVDHIWMKPGSKVLYLGAASGTTVSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVISIKASCIDSTAAPEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRPAPKTKK 202
            GTAPGPEGVATKLEYRVWNPFRSKLAAAILGGVDHIWMKPGSKVLYLGAASGTTVSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVISIKASCIDSTAAPEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRPAPKTKK
Sbjct:    1 GTAPGPEGVATKLEYRVWNPFRSKLAAAILGGVDHIWMKPGSKVLYLGAASGTTVSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVISIKASCIDSTAAPEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRPAPKTKK 202          
BLAST of EWM30617.1 vs. NCBI_GenBank
Match: gi|224009197|ref|XP_002293557.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970957|gb|EED89293.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 358.992 bits (920), Expect = 5.490e-123
Identity = 166/200 (83.00%), Postives = 185/200 (92.50%), Query Frame = 0
Query:    2 TAPGPEGVATKLEYRVWNPFRSKLAAAILGGVDHIWMKPGSKVLYLGAASGTTVSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVISIKASCIDSTAAPEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRPAPKTK 201
            T PGP+G  TK+EYRVWNPFRSK+AAAILGGVD+IW+KPGSKVLYLGAA+GT+VSHVSDIVGP G VYAVEFSHRPGRDL+N+AK RTNVIPI+EDARHPLKYRMLVGMVD +FAD+AQPDQARIV+LNSHYFLKNGGH VI+IKASCIDSTAAPEAVF++EV KLQ E FKPLEQLTLEPYERDH V++A YRP+ K K
Sbjct:  102 TPPGPDGNTTKVEYRVWNPFRSKIAAAILGGVDNIWIKPGSKVLYLGAAAGTSVSHVSDIVGPKGAVYAVEFSHRPGRDLLNVAKARTNVIPIIEDARHPLKYRMLVGMVDCVFADIAQPDQARIVALNSHYFLKNGGHSVIAIKASCIDSTAAPEAVFRREVSKLQSENFKPLEQLTLEPYERDHCVLIAQYRPSKKKK 301          
BLAST of EWM30617.1 vs. NCBI_GenBank
Match: gi|1072237252|gb|OEU21979.1| (Fibrillarin [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 347.436 bits (890), Expect = 1.216e-119
Identity = 161/191 (84.29%), Postives = 178/191 (93.19%), Query Frame = 0
Query:    6 PEGVATKLEYRVWNPFRSKLAAAILGGVDHIWMKPGSKVLYLGAASGTTVSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVISIKASCIDSTAAPEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRP 196
            P G A K EYRVWNPFRSK+AAAILGGVD IW+KPGSKVLY+GAA+GT+VSHVSDIVG TG VYAVEFSHRPGRDL+ +AKLRTN+IPIVEDARHPLKYRML+GMVD IFADVAQPDQARIV+LN+HYFLKNGGH VI++KASCIDSTAAPEAVF++EV KLQ+E FKPLEQLTLEPYERDHAVV+A YRP
Sbjct:   29 PGGAAVKTEYRVWNPFRSKIAAAILGGVDDIWIKPGSKVLYIGAAAGTSVSHVSDIVGKTGAVYAVEFSHRPGRDLLGVAKLRTNIIPIVEDARHPLKYRMLIGMVDCIFADVAQPDQARIVALNAHYFLKNGGHAVIAVKASCIDSTAAPEAVFRREVSKLQKENFKPLEQLTLEPYERDHAVVIAEYRP 219          
BLAST of EWM30617.1 vs. NCBI_GenBank
Match: gi|298713560|emb|CBJ27088.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 347.051 bits (889), Expect = 3.395e-119
Identity = 162/198 (81.82%), Postives = 181/198 (91.41%), Query Frame = 0
Query:    4 PGPEGVATKLEYRVWNPFRSKLAAAILGGVDHIWMKPGSKVLYLGAASGTTVSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVISIKASCIDSTAAPEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRPAPKTK 201
            P  +G  +K+EYRVWNPFRSKLAAAILGGVD I + PG+KVLYLGAA+GTTVSHV+DIVGP+GCVYAVEF+HRPGRDLINMAK RTNVIPI+EDARHPLKYRMLVGMVDT+FADVAQPDQARIV+LNSHYFLKNGGH VISIKASC+DSTA+PEAVF +EV KL+ E FKP EQ+TLEPYERDHAVV+A YRP  K+K
Sbjct:   50 PSEDGTTSKIEYRVWNPFRSKLAAAILGGVDGIHIVPGAKVLYLGAAAGTTVSHVADIVGPSGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDTVFADVAQPDQARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVIALYRPPKKSK 247          
BLAST of EWM30617.1 vs. NCBI_GenBank
Match: gi|1210516346|dbj|GAX24681.1| (rRNA 2'-O-methyltransferase fibrillarin [Fistulifera solaris])

HSP 1 Score: 348.591 bits (893), Expect = 7.607e-119
Identity = 161/193 (83.42%), Postives = 180/193 (93.26%), Query Frame = 0
Query:    7 EGVATKLEYRVWNPFRSKLAAAILGGVDHIWMKPGSKVLYLGAASGTTVSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVISIKASCIDSTAAPEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRPAPK 199
            E VA K+EYRVWNPFRSKLAAA+LGGVD+IW+ PGSKVLY+GAA+GT+VSHVSDIVGP G VYAVEFSHRPGRDL++MAK RTNVIPI+EDARHPLKYRML+GMVDT+FADVAQPDQARIV+LNSHYFLKNGGH VI++KASCIDSTA+PEAVF +EV+KLQ E FKPLEQLTLEPYERDHAVV+A YRP  K
Sbjct:  121 ETVAQKVEYRVWNPFRSKLAAAVLGGVDNIWIAPGSKVLYIGAAAGTSVSHVSDIVGPQGAVYAVEFSHRPGRDLLSMAKQRTNVIPIIEDARHPLKYRMLIGMVDTVFADVAQPDQARIVALNSHYFLKNGGHAVIAVKASCIDSTASPEAVFAREVQKLQAENFKPLEQLTLEPYERDHAVVIAEYRPNKK 313          
BLAST of EWM30617.1 vs. NCBI_GenBank
Match: gi|219126584|ref|XP_002183533.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404770|gb|EEC44715.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 348.591 bits (893), Expect = 8.517e-119
Identity = 161/196 (82.14%), Postives = 183/196 (93.37%), Query Frame = 0
Query:    7 EGVATKLEYRVWNPFRSKLAAAILGGVDHIWMKPGSKVLYLGAASGTTVSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVISIKASCIDSTAAPEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRPAPKTKK 202
            E VATK+EYRVWNPFRSK+AAAILGGV++IW+KPG KVLY+GAA+GT+VSHVSDIVGPTG VYAVEFSHRPGRDL+ +AK RTN+IPI+EDARHPLKYRML+GMVD++FADVAQPDQARIV+LNSHYFLKNGGH VI+IKASCIDSTAAPEAVFQ+EV+KL+ E FKP+EQ+TLEPYERDHAVVVA YRP  K  K
Sbjct:  121 ETVATKVEYRVWNPFRSKIAAAILGGVENIWIKPGYKVLYIGAAAGTSVSHVSDIVGPTGAVYAVEFSHRPGRDLLGVAKQRTNIIPIIEDARHPLKYRMLIGMVDSVFADVAQPDQARIVALNSHYFLKNGGHAVIAIKASCIDSTAAPEAVFQREVEKLRSENFKPIEQVTLEPYERDHAVVVAEYRPKKKKSK 316          
BLAST of EWM30617.1 vs. NCBI_GenBank
Match: gi|646704395|gb|KDR12598.1| (rRNA 2'-O-methyltransferase fibrillarin [Zootermopsis nevadensis])

HSP 1 Score: 340.502 bits (872), Expect = 1.453e-116
Identity = 161/191 (84.29%), Postives = 172/191 (90.05%), Query Frame = 0
Query:   11 TKLEYRVWNPFRSKLAAAILGGVDHIWMKPGSKVLYLGAASGTTVSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVISIKASCIDSTAAPEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRPAPKTK 201
             K+EYRVWNPFRSKLAAAILGGVD I+M PGSKVLYLGAASGTTVSHVSD+VGP G VYAVEFSHR GRDL+NMAK RTN+IPI+EDARHP KYRMLVGMVDT+FADVAQPDQARIV+LNS YFLKNGGH VISIKASCIDSTA PEAVF  EVKKLQ +K KP EQ+TLEPYERDHAVVV  YRP PK+K
Sbjct:   58 NKIEYRVWNPFRSKLAAAILGGVDQIYMSPGSKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLLNMAKKRTNIIPIIEDARHPHKYRMLVGMVDTVFADVAQPDQARIVALNSQYFLKNGGHFVISIKASCIDSTAQPEAVFASEVKKLQADKLKPQEQITLEPYERDHAVVVGVYRPPPKSK 248          
BLAST of EWM30617.1 vs. NCBI_GenBank
Match: gi|695396494|ref|XP_009521478.1| (hypothetical protein PHYSODRAFT_481376 [Phytophthora sojae] >gi|348686375|gb|EGZ26190.1| hypothetical protein PHYSODRAFT_481376 [Phytophthora sojae])

HSP 1 Score: 338.191 bits (866), Expect = 1.111e-115
Identity = 163/200 (81.50%), Postives = 178/200 (89.00%), Query Frame = 0
Query:    4 PGPEGVAT-KLEYRVWNPFRSKLAAAILGGVDHIWMKPGSKVLYLGAASGTTVSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVISIKASCIDSTAAPEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRPAPKTKK 202
            P   G  T K+EYRVWNPFRSK+AAAILGGVD+IW++PG+KVLYLG ASGTTVSHVSDIVGPTG VYAVEFSHR GRDLINMAK RTNV+PI+EDARHPLKYRMLV MVD +FADVAQPDQARIV+LN+ +FLKNGGH VISIKASCIDSTAAPEAVF +EVKKLQ+E+FKP EQLTLEPYERDHAVVV  YR   K KK
Sbjct:   49 PAASGEGTEKVEYRVWNPFRSKIAAAILGGVDNIWIQPGAKVLYLGGASGTTVSHVSDIVGPTGAVYAVEFSHRVGRDLINMAKSRTNVVPIIEDARHPLKYRMLVPMVDVVFADVAQPDQARIVALNASHFLKNGGHFVISIKASCIDSTAAPEAVFAREVKKLQQEQFKPAEQLTLEPYERDHAVVVGAYRVPKKEKK 248          
BLAST of EWM30617.1 vs. NCBI_GenBank
Match: gi|1173950113|gb|OQR98092.1| (rRNA 2'-O-methyltransferase fibrillarin [Achlya hypogyna])

HSP 1 Score: 339.732 bits (870), Expect = 2.723e-115
Identity = 164/199 (82.41%), Postives = 177/199 (88.94%), Query Frame = 0
Query:    4 PGPEGVAT-KLEYRVWNPFRSKLAAAILGGVDHIWMKPGSKVLYLGAASGTTVSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVISIKASCIDSTAAPEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRPAPKTK 201
            P   G  T K+EYRVWNPFRSKLAAAILGGVD+IWM PG+KVLY+G ASGTTVSHVSDIVGPTG VYAVEFSHR GRDLINMAK RTNVIPI+EDARHPLKYRMLV MVDTIFADVAQPDQARIV+LN+ YFLKNGGH V+SIKASCIDSTA  EAVF +EVKKLQ+++FKP EQLTLEPYERDHAVVV +YR A K K
Sbjct:  115 PAASGEGTEKVEYRVWNPFRSKLAAAILGGVDNIWMGPGAKVLYIGGASGTTVSHVSDIVGPTGAVYAVEFSHRSGRDLINMAKSRTNVIPIIEDARHPLKYRMLVPMVDTIFADVAQPDQARIVALNASYFLKNGGHFVVSIKASCIDSTAPAEAVFTREVKKLQQDQFKPAEQLTLEPYERDHAVVVGSYRVAKKEK 313          
BLAST of EWM30617.1 vs. NCBI_GenBank
Match: gi|698801100|ref|XP_009833579.1| (rRNA 2'-O-methyltransferase fibrillarin [Aphanomyces astaci] >gi|574111171|gb|ETV76667.1| rRNA 2'-O-methyltransferase fibrillarin [Aphanomyces astaci])

HSP 1 Score: 339.732 bits (870), Expect = 3.615e-115
Identity = 166/200 (83.00%), Postives = 178/200 (89.00%), Query Frame = 0
Query:    4 PGPEGVAT-KLEYRVWNPFRSKLAAAILGGVDHIWMKPGSKVLYLGAASGTTVSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVISIKASCIDSTAAPEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRPAPKTKK 202
            P   G  T K+EYRVWNPFRSKLAAAILGGVD+IWM PGSKVLY+G ASGTTVSHVSDIVGPTG VYAVEFSHR GRDLINMAK RTNVIPI+EDARHPLKYRMLV MVDTIFADVAQPDQARIV+LN+ YFLKNGGH V+SIKASCIDSTA  EAVF +EVKKLQ+++FKP EQLTLEPYERDHAVVV +YR APK  K
Sbjct:  125 PAASGEGTEKVEYRVWNPFRSKLAAAILGGVDNIWMGPGSKVLYIGGASGTTVSHVSDIVGPTGAVYAVEFSHRSGRDLINMAKSRTNVIPIIEDARHPLKYRMLVPMVDTIFADVAQPDQARIVALNASYFLKNGGHFVVSIKASCIDSTAPAEAVFAREVKKLQQDQFKPAEQLTLEPYERDHAVVVGSYR-APKKDK 323          
The following BLAST results are available for this feature:
BLAST of EWM30617.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113291|gb|EWM30617.1|5.523e-148100.00Fibrillarin, partial [Nannochloropsis gaditana][more]
gi|224009197|ref|XP_002293557.1|5.490e-12383.00predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1072237252|gb|OEU21979.1|1.216e-11984.29Fibrillarin [Fragilariopsis cylindrus CCMP1102][more]
gi|298713560|emb|CBJ27088.1|3.395e-11981.82conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210516346|dbj|GAX24681.1|7.607e-11983.42rRNA 2'-O-methyltransferase fibrillarin [Fistulife... [more]
gi|219126584|ref|XP_002183533.1|8.517e-11982.14predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|646704395|gb|KDR12598.1|1.453e-11684.29rRNA 2'-O-methyltransferase fibrillarin [Zootermop... [more]
gi|695396494|ref|XP_009521478.1|1.111e-11581.50hypothetical protein PHYSODRAFT_481376 [Phytophtho... [more]
gi|1173950113|gb|OQR98092.1|2.723e-11582.41rRNA 2'-O-methyltransferase fibrillarin [Achlya hy... [more]
gi|698801100|ref|XP_009833579.1|3.615e-11583.00rRNA 2'-O-methyltransferase fibrillarin [Aphanomyc... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna56rna56Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications