EWM30617.1, cds56 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30617.1 vs. NCBI_GenBank
Match: gi|585113291|gb|EWM30617.1| (Fibrillarin, partial [Nannochloropsis gaditana]) HSP 1 Score: 417.927 bits (1073), Expect = 5.523e-148 Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0 Query: 1 GTAPGPEGVATKLEYRVWNPFRSKLAAAILGGVDHIWMKPGSKVLYLGAASGTTVSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVISIKASCIDSTAAPEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRPAPKTKK 202 GTAPGPEGVATKLEYRVWNPFRSKLAAAILGGVDHIWMKPGSKVLYLGAASGTTVSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVISIKASCIDSTAAPEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRPAPKTKK Sbjct: 1 GTAPGPEGVATKLEYRVWNPFRSKLAAAILGGVDHIWMKPGSKVLYLGAASGTTVSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVISIKASCIDSTAAPEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRPAPKTKK 202
BLAST of EWM30617.1 vs. NCBI_GenBank
Match: gi|224009197|ref|XP_002293557.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970957|gb|EED89293.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 358.992 bits (920), Expect = 5.490e-123 Identity = 166/200 (83.00%), Postives = 185/200 (92.50%), Query Frame = 0 Query: 2 TAPGPEGVATKLEYRVWNPFRSKLAAAILGGVDHIWMKPGSKVLYLGAASGTTVSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVISIKASCIDSTAAPEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRPAPKTK 201 T PGP+G TK+EYRVWNPFRSK+AAAILGGVD+IW+KPGSKVLYLGAA+GT+VSHVSDIVGP G VYAVEFSHRPGRDL+N+AK RTNVIPI+EDARHPLKYRMLVGMVD +FAD+AQPDQARIV+LNSHYFLKNGGH VI+IKASCIDSTAAPEAVF++EV KLQ E FKPLEQLTLEPYERDH V++A YRP+ K K Sbjct: 102 TPPGPDGNTTKVEYRVWNPFRSKIAAAILGGVDNIWIKPGSKVLYLGAAAGTSVSHVSDIVGPKGAVYAVEFSHRPGRDLLNVAKARTNVIPIIEDARHPLKYRMLVGMVDCVFADIAQPDQARIVALNSHYFLKNGGHSVIAIKASCIDSTAAPEAVFRREVSKLQSENFKPLEQLTLEPYERDHCVLIAQYRPSKKKK 301
BLAST of EWM30617.1 vs. NCBI_GenBank
Match: gi|1072237252|gb|OEU21979.1| (Fibrillarin [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 347.436 bits (890), Expect = 1.216e-119 Identity = 161/191 (84.29%), Postives = 178/191 (93.19%), Query Frame = 0 Query: 6 PEGVATKLEYRVWNPFRSKLAAAILGGVDHIWMKPGSKVLYLGAASGTTVSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVISIKASCIDSTAAPEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRP 196 P G A K EYRVWNPFRSK+AAAILGGVD IW+KPGSKVLY+GAA+GT+VSHVSDIVG TG VYAVEFSHRPGRDL+ +AKLRTN+IPIVEDARHPLKYRML+GMVD IFADVAQPDQARIV+LN+HYFLKNGGH VI++KASCIDSTAAPEAVF++EV KLQ+E FKPLEQLTLEPYERDHAVV+A YRP Sbjct: 29 PGGAAVKTEYRVWNPFRSKIAAAILGGVDDIWIKPGSKVLYIGAAAGTSVSHVSDIVGKTGAVYAVEFSHRPGRDLLGVAKLRTNIIPIVEDARHPLKYRMLIGMVDCIFADVAQPDQARIVALNAHYFLKNGGHAVIAVKASCIDSTAAPEAVFRREVSKLQKENFKPLEQLTLEPYERDHAVVIAEYRP 219
BLAST of EWM30617.1 vs. NCBI_GenBank
Match: gi|298713560|emb|CBJ27088.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 347.051 bits (889), Expect = 3.395e-119 Identity = 162/198 (81.82%), Postives = 181/198 (91.41%), Query Frame = 0 Query: 4 PGPEGVATKLEYRVWNPFRSKLAAAILGGVDHIWMKPGSKVLYLGAASGTTVSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVISIKASCIDSTAAPEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRPAPKTK 201 P +G +K+EYRVWNPFRSKLAAAILGGVD I + PG+KVLYLGAA+GTTVSHV+DIVGP+GCVYAVEF+HRPGRDLINMAK RTNVIPI+EDARHPLKYRMLVGMVDT+FADVAQPDQARIV+LNSHYFLKNGGH VISIKASC+DSTA+PEAVF +EV KL+ E FKP EQ+TLEPYERDHAVV+A YRP K+K Sbjct: 50 PSEDGTTSKIEYRVWNPFRSKLAAAILGGVDGIHIVPGAKVLYLGAAAGTTVSHVADIVGPSGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDTVFADVAQPDQARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVIALYRPPKKSK 247
BLAST of EWM30617.1 vs. NCBI_GenBank
Match: gi|1210516346|dbj|GAX24681.1| (rRNA 2'-O-methyltransferase fibrillarin [Fistulifera solaris]) HSP 1 Score: 348.591 bits (893), Expect = 7.607e-119 Identity = 161/193 (83.42%), Postives = 180/193 (93.26%), Query Frame = 0 Query: 7 EGVATKLEYRVWNPFRSKLAAAILGGVDHIWMKPGSKVLYLGAASGTTVSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVISIKASCIDSTAAPEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRPAPK 199 E VA K+EYRVWNPFRSKLAAA+LGGVD+IW+ PGSKVLY+GAA+GT+VSHVSDIVGP G VYAVEFSHRPGRDL++MAK RTNVIPI+EDARHPLKYRML+GMVDT+FADVAQPDQARIV+LNSHYFLKNGGH VI++KASCIDSTA+PEAVF +EV+KLQ E FKPLEQLTLEPYERDHAVV+A YRP K Sbjct: 121 ETVAQKVEYRVWNPFRSKLAAAVLGGVDNIWIAPGSKVLYIGAAAGTSVSHVSDIVGPQGAVYAVEFSHRPGRDLLSMAKQRTNVIPIIEDARHPLKYRMLIGMVDTVFADVAQPDQARIVALNSHYFLKNGGHAVIAVKASCIDSTASPEAVFAREVQKLQAENFKPLEQLTLEPYERDHAVVIAEYRPNKK 313
BLAST of EWM30617.1 vs. NCBI_GenBank
Match: gi|219126584|ref|XP_002183533.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404770|gb|EEC44715.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 348.591 bits (893), Expect = 8.517e-119 Identity = 161/196 (82.14%), Postives = 183/196 (93.37%), Query Frame = 0 Query: 7 EGVATKLEYRVWNPFRSKLAAAILGGVDHIWMKPGSKVLYLGAASGTTVSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVISIKASCIDSTAAPEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRPAPKTKK 202 E VATK+EYRVWNPFRSK+AAAILGGV++IW+KPG KVLY+GAA+GT+VSHVSDIVGPTG VYAVEFSHRPGRDL+ +AK RTN+IPI+EDARHPLKYRML+GMVD++FADVAQPDQARIV+LNSHYFLKNGGH VI+IKASCIDSTAAPEAVFQ+EV+KL+ E FKP+EQ+TLEPYERDHAVVVA YRP K K Sbjct: 121 ETVATKVEYRVWNPFRSKIAAAILGGVENIWIKPGYKVLYIGAAAGTSVSHVSDIVGPTGAVYAVEFSHRPGRDLLGVAKQRTNIIPIIEDARHPLKYRMLIGMVDSVFADVAQPDQARIVALNSHYFLKNGGHAVIAIKASCIDSTAAPEAVFQREVEKLRSENFKPIEQVTLEPYERDHAVVVAEYRPKKKKSK 316
BLAST of EWM30617.1 vs. NCBI_GenBank
Match: gi|646704395|gb|KDR12598.1| (rRNA 2'-O-methyltransferase fibrillarin [Zootermopsis nevadensis]) HSP 1 Score: 340.502 bits (872), Expect = 1.453e-116 Identity = 161/191 (84.29%), Postives = 172/191 (90.05%), Query Frame = 0 Query: 11 TKLEYRVWNPFRSKLAAAILGGVDHIWMKPGSKVLYLGAASGTTVSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVISIKASCIDSTAAPEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRPAPKTK 201 K+EYRVWNPFRSKLAAAILGGVD I+M PGSKVLYLGAASGTTVSHVSD+VGP G VYAVEFSHR GRDL+NMAK RTN+IPI+EDARHP KYRMLVGMVDT+FADVAQPDQARIV+LNS YFLKNGGH VISIKASCIDSTA PEAVF EVKKLQ +K KP EQ+TLEPYERDHAVVV YRP PK+K Sbjct: 58 NKIEYRVWNPFRSKLAAAILGGVDQIYMSPGSKVLYLGAASGTTVSHVSDVVGPEGLVYAVEFSHRSGRDLLNMAKKRTNIIPIIEDARHPHKYRMLVGMVDTVFADVAQPDQARIVALNSQYFLKNGGHFVISIKASCIDSTAQPEAVFASEVKKLQADKLKPQEQITLEPYERDHAVVVGVYRPPPKSK 248
BLAST of EWM30617.1 vs. NCBI_GenBank
Match: gi|695396494|ref|XP_009521478.1| (hypothetical protein PHYSODRAFT_481376 [Phytophthora sojae] >gi|348686375|gb|EGZ26190.1| hypothetical protein PHYSODRAFT_481376 [Phytophthora sojae]) HSP 1 Score: 338.191 bits (866), Expect = 1.111e-115 Identity = 163/200 (81.50%), Postives = 178/200 (89.00%), Query Frame = 0 Query: 4 PGPEGVAT-KLEYRVWNPFRSKLAAAILGGVDHIWMKPGSKVLYLGAASGTTVSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVISIKASCIDSTAAPEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRPAPKTKK 202 P G T K+EYRVWNPFRSK+AAAILGGVD+IW++PG+KVLYLG ASGTTVSHVSDIVGPTG VYAVEFSHR GRDLINMAK RTNV+PI+EDARHPLKYRMLV MVD +FADVAQPDQARIV+LN+ +FLKNGGH VISIKASCIDSTAAPEAVF +EVKKLQ+E+FKP EQLTLEPYERDHAVVV YR K KK Sbjct: 49 PAASGEGTEKVEYRVWNPFRSKIAAAILGGVDNIWIQPGAKVLYLGGASGTTVSHVSDIVGPTGAVYAVEFSHRVGRDLINMAKSRTNVVPIIEDARHPLKYRMLVPMVDVVFADVAQPDQARIVALNASHFLKNGGHFVISIKASCIDSTAAPEAVFAREVKKLQQEQFKPAEQLTLEPYERDHAVVVGAYRVPKKEKK 248
BLAST of EWM30617.1 vs. NCBI_GenBank
Match: gi|1173950113|gb|OQR98092.1| (rRNA 2'-O-methyltransferase fibrillarin [Achlya hypogyna]) HSP 1 Score: 339.732 bits (870), Expect = 2.723e-115 Identity = 164/199 (82.41%), Postives = 177/199 (88.94%), Query Frame = 0 Query: 4 PGPEGVAT-KLEYRVWNPFRSKLAAAILGGVDHIWMKPGSKVLYLGAASGTTVSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVISIKASCIDSTAAPEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRPAPKTK 201 P G T K+EYRVWNPFRSKLAAAILGGVD+IWM PG+KVLY+G ASGTTVSHVSDIVGPTG VYAVEFSHR GRDLINMAK RTNVIPI+EDARHPLKYRMLV MVDTIFADVAQPDQARIV+LN+ YFLKNGGH V+SIKASCIDSTA EAVF +EVKKLQ+++FKP EQLTLEPYERDHAVVV +YR A K K Sbjct: 115 PAASGEGTEKVEYRVWNPFRSKLAAAILGGVDNIWMGPGAKVLYIGGASGTTVSHVSDIVGPTGAVYAVEFSHRSGRDLINMAKSRTNVIPIIEDARHPLKYRMLVPMVDTIFADVAQPDQARIVALNASYFLKNGGHFVVSIKASCIDSTAPAEAVFTREVKKLQQDQFKPAEQLTLEPYERDHAVVVGSYRVAKKEK 313
BLAST of EWM30617.1 vs. NCBI_GenBank
Match: gi|698801100|ref|XP_009833579.1| (rRNA 2'-O-methyltransferase fibrillarin [Aphanomyces astaci] >gi|574111171|gb|ETV76667.1| rRNA 2'-O-methyltransferase fibrillarin [Aphanomyces astaci]) HSP 1 Score: 339.732 bits (870), Expect = 3.615e-115 Identity = 166/200 (83.00%), Postives = 178/200 (89.00%), Query Frame = 0 Query: 4 PGPEGVAT-KLEYRVWNPFRSKLAAAILGGVDHIWMKPGSKVLYLGAASGTTVSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVISIKASCIDSTAAPEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRPAPKTKK 202 P G T K+EYRVWNPFRSKLAAAILGGVD+IWM PGSKVLY+G ASGTTVSHVSDIVGPTG VYAVEFSHR GRDLINMAK RTNVIPI+EDARHPLKYRMLV MVDTIFADVAQPDQARIV+LN+ YFLKNGGH V+SIKASCIDSTA EAVF +EVKKLQ+++FKP EQLTLEPYERDHAVVV +YR APK K Sbjct: 125 PAASGEGTEKVEYRVWNPFRSKLAAAILGGVDNIWMGPGSKVLYIGGASGTTVSHVSDIVGPTGAVYAVEFSHRSGRDLINMAKSRTNVIPIIEDARHPLKYRMLVPMVDTIFADVAQPDQARIVALNASYFLKNGGHFVVSIKASCIDSTAPAEAVFAREVKKLQQDQFKPAEQLTLEPYERDHAVVVGSYR-APKKDK 323 The following BLAST results are available for this feature:
BLAST of EWM30617.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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