EWM25123.1, cds5542 (CDS) Nannochloropsis gaditana

Overview
NameEWM25123.1
Unique Namecds5542
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:279450..281216 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25123.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100016g52.2932.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:279450..281216 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0016043cellular component organization
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR008676MRG
IPR026541MRG_dom
Homology
BLAST of EWM25123.1 vs. NCBI_GenBank
Match: gi|585106761|gb|EWM25123.1| (hypothetical protein Naga_100016g52 [Nannochloropsis gaditana])

HSP 1 Score: 1206.05 bits (3119), Expect = 0.000e+0
Identity = 588/588 (100.00%), Postives = 588/588 (100.00%), Query Frame = 0
Query:    1 MPKRQGRSDGAMLKAKSNSKRGRDGSVTTDNEEHVRDSHAKGVVRRPRAIHAQSETSRVESESKDLGHGDDLDPVTLARPSRAAASTAKARIGKTFEYRGTGGNAIAEKVHTNGEKKESKPEKAAARQSGSLREAPHRLELVADRHSKGALLDALIRIKPPDVLMKAFKWSSRNDKYFALTVFSAKGNRILPELLKEVPLRYRIASVGARRSNETTSKETGEEEVLYDEAGKATHGGMYYFRVPQFKIPGCYSISFQLQGPAAFNKLDPVSQIVTVVPADALEHTDPFPPRAQENEAMALPTGTLRSLRSQRQGAEGSASNAAVGRGSTRDPALGGGGNARVQHSLEKHLAASVKEDTDSMLTFDELWLKGQLLTLVIPGALRQQLCEDWFAITRRRCVVGALPRHDGKKNIRLGKQTSNPQWPSVGEVVRMYERSIPAASLGDFKGLGARLCTLFDGALGNVLLYRFEMDQYLSLLELGGKSKLPHQIWGAEHLLRLLAIAPRLLGIQKSTSNKKRVDEESSDTLMNSEAPVGMEVERPGSREIEVARTYLQGLLDFLETEQASLFASYVEPPGKFGLDVPRNFRPS 588
            MPKRQGRSDGAMLKAKSNSKRGRDGSVTTDNEEHVRDSHAKGVVRRPRAIHAQSETSRVESESKDLGHGDDLDPVTLARPSRAAASTAKARIGKTFEYRGTGGNAIAEKVHTNGEKKESKPEKAAARQSGSLREAPHRLELVADRHSKGALLDALIRIKPPDVLMKAFKWSSRNDKYFALTVFSAKGNRILPELLKEVPLRYRIASVGARRSNETTSKETGEEEVLYDEAGKATHGGMYYFRVPQFKIPGCYSISFQLQGPAAFNKLDPVSQIVTVVPADALEHTDPFPPRAQENEAMALPTGTLRSLRSQRQGAEGSASNAAVGRGSTRDPALGGGGNARVQHSLEKHLAASVKEDTDSMLTFDELWLKGQLLTLVIPGALRQQLCEDWFAITRRRCVVGALPRHDGKKNIRLGKQTSNPQWPSVGEVVRMYERSIPAASLGDFKGLGARLCTLFDGALGNVLLYRFEMDQYLSLLELGGKSKLPHQIWGAEHLLRLLAIAPRLLGIQKSTSNKKRVDEESSDTLMNSEAPVGMEVERPGSREIEVARTYLQGLLDFLETEQASLFASYVEPPGKFGLDVPRNFRPS
Sbjct:    1 MPKRQGRSDGAMLKAKSNSKRGRDGSVTTDNEEHVRDSHAKGVVRRPRAIHAQSETSRVESESKDLGHGDDLDPVTLARPSRAAASTAKARIGKTFEYRGTGGNAIAEKVHTNGEKKESKPEKAAARQSGSLREAPHRLELVADRHSKGALLDALIRIKPPDVLMKAFKWSSRNDKYFALTVFSAKGNRILPELLKEVPLRYRIASVGARRSNETTSKETGEEEVLYDEAGKATHGGMYYFRVPQFKIPGCYSISFQLQGPAAFNKLDPVSQIVTVVPADALEHTDPFPPRAQENEAMALPTGTLRSLRSQRQGAEGSASNAAVGRGSTRDPALGGGGNARVQHSLEKHLAASVKEDTDSMLTFDELWLKGQLLTLVIPGALRQQLCEDWFAITRRRCVVGALPRHDGKKNIRLGKQTSNPQWPSVGEVVRMYERSIPAASLGDFKGLGARLCTLFDGALGNVLLYRFEMDQYLSLLELGGKSKLPHQIWGAEHLLRLLAIAPRLLGIQKSTSNKKRVDEESSDTLMNSEAPVGMEVERPGSREIEVARTYLQGLLDFLETEQASLFASYVEPPGKFGLDVPRNFRPS 588          
BLAST of EWM25123.1 vs. NCBI_GenBank
Match: gi|1034733850|gb|OAV88052.1| (hypothetical protein PTTG_05657 [Puccinia triticina 1-1 BBBD Race 1])

HSP 1 Score: 81.2629 bits (199), Expect = 3.144e-13
Identity = 62/201 (30.85%), Postives = 92/201 (45.77%), Query Frame = 0
Query:  374 LTLVIPGALRQQLCEDWFAITRRRCVVGALPRHDGKKNIRLGKQTSNPQWPSVGEVVRMYER-----SIPAASLGDFKGLGARLCTLFDGALGNVLLYRFEMDQYLSLLELGGKSKLPHQIWGAEHLLRLLAIAPRLLGIQKSTSNKKRVDEESSDTLMNSEAPVGMEVERPGSREIEVARTYLQGLLDFLETEQASLFAS 569
            +T+VIP  L+ QL +DW A+TR+  VV +LPR                  P+V  ++  YE+     S  A +    K + A L   FD +LG+ LLYR E  QY+   +   K KLP +I+GAEHLLRL+   P ++                S T M  E              I + R ++  +LD++  EQ+ +  S
Sbjct:  138 ITIVIPEPLKLQLVDDWEAVTRKNQVV-SLPRS-----------------PNVKSLLEEYEQYAVNDSTTAQAKNLIKEVNAGLKVYFDKSLGHCLLYRNERQQYIDTRK-KLKCKLPSEIYGAEHLLRLIVNLPEMI----------------SHTKMEPEI-------------INIVREHIAKILDWIVAEQSRIIQS 290          
BLAST of EWM25123.1 vs. NCBI_GenBank
Match: gi|909606633|gb|KNE96992.1| (hypothetical protein PSTG_09730 [Puccinia striiformis f. sp. tritici PST-78])

HSP 1 Score: 79.337 bits (194), Expect = 1.481e-12
Identity = 63/209 (30.14%), Postives = 98/209 (46.89%), Query Frame = 0
Query:  372 QLLTLVIPGALRQQLCEDWFAITRRRCVVGALPRHDGKKNIRLGKQTSNPQWPSVGEVVRMYER-------SIPAASLGDFKGLGARLCTLFDGALGNVLLYRFEMDQYLSLLELGGKSKLPHQIWGAEHLLRLLAIAPRLLGIQKSTSNKKRVDEESSDTLMNSEAPVGMEVERPGSREIEVARTYLQGLLDFLETEQASLFAS-YVE 572
            Q +T++IP AL+ QL +DW A+TR+  VV +LPR                  P+V +++  YE        +    S    K + A L   FD +LG+ LLYR E  Q++ + +   K KLP +I+GAEHLLRL+   P ++                S T M  E              I + + ++  +L++L TEQ+ +  S Y+E
Sbjct:  147 QTITIMIPEALKLQLVDDWEAVTRKNQVV-SLPRT-----------------PTVKKLLEEYEEYTINEPITTTPQSKNLIKEVNAGLKVYFDRSLGHSLLYRNERQQFIDIRK-KLKGKLPSEIYGAEHLLRLIVNLPEMI----------------SHTKMEPEI-------------IGIVQEHIAKILEWLVTEQSRVIQSPYIE 307          
BLAST of EWM25123.1 vs. NCBI_GenBank
Match: gi|296420776|ref|XP_002839944.1| (hypothetical protein [Tuber melanosporum Mel28] >gi|295636152|emb|CAZ84135.1| unnamed protein product [Tuber melanosporum])

HSP 1 Score: 78.1814 bits (191), Expect = 3.018e-12
Identity = 50/149 (33.56%), Postives = 78/149 (52.35%), Query Frame = 0
Query:  365 DELWLKGQLLTLVIPGALRQQLCEDWFAITRRRCVVGALPRHDGKKNIRLGKQTSNPQWPSVGEVVRMYERSIP-----AASLGDFKGLGARLCTLFDGALGNVLLYRFEMDQYLSL-LELGGKSKLPHQIWGAEHLLRLLAIAPRLLG 507
            +E ++K   + + IP  L+  L +DW  +T+ + +V  LPR+                 PSV ++++ Y  S+P     +A +  F+ + A L   FD +LG +LLYRFE  QY+ +  E  GK   P +++GAEHLLRL    P LL 
Sbjct:  134 EEDFMKRHDIKITIPDNLKALLVDDWENVTKNQQLV-PLPRN-----------------PSVTQILQKYRESMPKKREGSADMDIFEEVLAGLKLYFDKSLGTILLYRFERQQYMEIRKEHPGKE--PSELYGAEHLLRLFVSMPELLA 262          
BLAST of EWM25123.1 vs. NCBI_GenBank
Match: gi|403175276|ref|XP_003334123.2| (hypothetical protein PGTG_15360 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] >gi|375171532|gb|EFP89704.2| hypothetical protein PGTG_15360 [Puccinia graminis f. sp. tritici CRL 75-36-700-3])

HSP 1 Score: 77.7962 bits (190), Expect = 4.178e-12
Identity = 64/204 (31.37%), Postives = 93/204 (45.59%), Query Frame = 0
Query:  372 QLLTLVIPGALRQQLCEDWFAITRRRCVVGALPRHDGKKNIRLGKQTSNPQWPSVGEVVRMYER------SIPAASLGDFKGLGARLCTLFDGALGNVLLYRFEMDQYLSLLELGGKSKLPHQIWGAEHLLRLLAIAPRLLGIQKSTSNKKRVDEESSDTLMNSEAPVGMEVERPGSREIEVARTYLQGLLDFLETEQASLFAS 569
            Q +T+VIP  L+ QL +DW A+TR+  VV +LPR                  P+V  ++  YER      + P A     K + A L   FD +LG  LLYR E  QY+ + +   K KL  +I+GAEHLLRL+   P ++                S T M  E              I + R ++  +L++L TEQ+ +  S
Sbjct:  136 QPVTIVIPEPLKIQLVDDWEAVTRQNQVV-SLPRT-----------------PTVKSLLEEYERYAIDDSTTPQAK-NLIKEVNAGLKVYFDKSLGYCLLYRNERQQYIEIRK-KLKGKLASEIYGAEHLLRLIVNLPEMI----------------SHTKMEPEI-------------INIVREHVAKILEWLVTEQSRVIQS 290          
BLAST of EWM25123.1 vs. NCBI_GenBank
Match: gi|1063244185|gb|ODQ66960.1| (MRG-domain-containing protein [Nadsonia fulvescens var. elongata DSM 6958])

HSP 1 Score: 77.411 bits (189), Expect = 7.573e-12
Identity = 56/205 (27.32%), Postives = 92/205 (44.88%), Query Frame = 0
Query:  368 WLKGQLLTLVIPGALRQQLCEDWFAITRRRCVVGALPRHDGKKNIRLGKQTSNPQWPSVGEVVRMYERSIP-----AASLGDFKGLGARLCTLFDGALGNVLLYRFEMDQYLSLLELGGKSKLPHQIWGAEHLLRLLAIAPRLLGIQKSTSNKKRVDEESSDTLMNSEAPVGMEVERPGSREIEVARTYLQGLLDFLETEQASLF 567
            +LK   + + +P +L++ L +DW  IT+   VV  LPR                  P+V ++++ Y+   P     +A    F  + + +   FD +LGN+LLYR+E  QYL +L+      +  +I+GAEHLLRL    P L+        +  +D++S                      I V + +L+ +L FL   QA  F
Sbjct:  150 YLKRPEIVINVPDSLKELLVDDWEFITKEHQVV-TLPRK-----------------PNVVQILKRYQDESPKKKANSAEADIFDEVLSGIKIYFDRSLGNILLYRYERQQYLEILKTNADKSMS-EIYGAEHLLRLFVSLPSLIA-------QTNMDQQS----------------------IAVLKEHLEDVLKFLHKHQAEFF 306          
BLAST of EWM25123.1 vs. NCBI_GenBank
Match: gi|667791939|ref|XP_007875107.1| (hypothetical protein PNEG_03052 [Pneumocystis murina B123] >gi|470316837|gb|EMR08575.1| hypothetical protein PNEG_03052 [Pneumocystis murina B123])

HSP 1 Score: 76.6406 bits (187), Expect = 1.212e-11
Identity = 60/207 (28.99%), Postives = 88/207 (42.51%), Query Frame = 0
Query:  374 LTLVIPGALRQQLCEDWFAITRRRCVVGALPRHDGKKNIRLGKQTSNPQWPSVGEVVRMYERSIPAASLGDFKGLGARLC--------TLFDGALGNVLLYRFEMDQYLSLLELGGKSKLPHQIWGAEHLLRLLAIAPRLLGIQKSTSNKKRVDEESSDTLMNSEAPVGMEVERPGSREIEVARTYLQGLLDFLETEQASLFASYVE 572
            + + IP  L+ QL +DW  IT+ + +V +LPR                  P+V E+++ Y+ SI A     F  L   +           FD  LGN+LLYRFE  QY S +    K+K    I+GAEHLLRL    P L+                + T M+ ++             I++ + Y++  L FL   QA  F    E
Sbjct:  132 INIPIPDTLKAQLVDDWENITKNQQLV-SLPRS-----------------PTVTEILQNYKNSILAFQKKRFTDLDTDIFEEVVSGIKLYFDRCLGNILLYRFERQQY-SDIRKTAKNKEMSDIYGAEHLLRLFVTLPELI----------------AHTNMDYQS-------------IQILKNYIKDFLKFLVKNQAEYFLKIYE 290          
BLAST of EWM25123.1 vs. NCBI_GenBank
Match: gi|403175927|ref|XP_003334668.2| (hypothetical protein PGTG_16527 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] >gi|375171812|gb|EFP90249.2| hypothetical protein PGTG_16527 [Puccinia graminis f. sp. tritici CRL 75-36-700-3])

HSP 1 Score: 75.485 bits (184), Expect = 2.806e-11
Identity = 63/204 (30.88%), Postives = 92/204 (45.10%), Query Frame = 0
Query:  372 QLLTLVIPGALRQQLCEDWFAITRRRCVVGALPRHDGKKNIRLGKQTSNPQWPSVGEVVRMYER------SIPAASLGDFKGLGARLCTLFDGALGNVLLYRFEMDQYLSLLELGGKSKLPHQIWGAEHLLRLLAIAPRLLGIQKSTSNKKRVDEESSDTLMNSEAPVGMEVERPGSREIEVARTYLQGLLDFLETEQASLFAS 569
            Q +T+VIP  L+ QL +DW A+TR+  VV +LPR                  P+V  ++  YER      + P A     K + A L   FD +LG  LLYR E  QY+ + +   K KL  +I+GAEHLLRL+   P ++                S T M  E              I + R ++  +L++L  EQ+ +  S
Sbjct:  136 QPVTIVIPEPLKIQLVDDWEAVTRQNQVV-SLPRT-----------------PTVKSLLEEYERYAVDDSTTPQAK-NLIKEVNAGLKVYFDKSLGYCLLYRNERQQYIEIRK-KLKGKLASEIYGAEHLLRLIVNLPEMI----------------SHTKMEPEI-------------INIVREHVAKILEWLVLEQSRVIQS 290          
BLAST of EWM25123.1 vs. NCBI_GenBank
Match: gi|1069856330|ref|XP_018227689.1| (hypothetical protein T552_00211 [Pneumocystis carinii B80] >gi|968586900|gb|KTW31573.1| hypothetical protein T552_00211 [Pneumocystis carinii B80])

HSP 1 Score: 74.3294 bits (181), Expect = 6.107e-11
Identity = 59/207 (28.50%), Postives = 86/207 (41.55%), Query Frame = 0
Query:  374 LTLVIPGALRQQLCEDWFAITRRRCVVGALPRHDGKKNIRLGKQTSNPQWPSVGEVVRMYERSIPAASLGDFKGLGARLC--------TLFDGALGNVLLYRFEMDQYLSLLELGGKSKLPHQIWGAEHLLRLLAIAPRLLGIQKSTSNKKRVDEESSDTLMNSEAPVGMEVERPGSREIEVARTYLQGLLDFLETEQASLFASYVE 572
            + + IP  L+ QL +DW  IT+ + +V +LPR                  P+V E+++ Y+ SI       F  L   +           FD  LGN+LLYRFE  QY S +    K K    I+GAEHLLRL    P L+                + T M+ ++             I++ + Y++  L FL   QA  F    E
Sbjct:  132 INIPIPDTLKAQLVDDWENITKNQQLV-SLPRS-----------------PTVTEILQNYKNSILTLQKKRFTDLDTDIFEEVVSGIKLYFDRCLGNILLYRFERQQY-SDIRKTAKDKEMSDIYGAEHLLRLFVTLPELI----------------AHTNMDYQS-------------IQILKNYIKDFLKFLVKNQAEYFLKIYE 290          
BLAST of EWM25123.1 vs. NCBI_GenBank
Match: gi|1069889155|ref|XP_018228074.1| (hypothetical protein T551_03462 [Pneumocystis jirovecii RU7] >gi|968581848|gb|KTW26545.1| hypothetical protein T551_03462 [Pneumocystis jirovecii RU7])

HSP 1 Score: 73.559 bits (179), Expect = 1.083e-10
Identity = 58/207 (28.02%), Postives = 86/207 (41.55%), Query Frame = 0
Query:  374 LTLVIPGALRQQLCEDWFAITRRRCVVGALPRHDGKKNIRLGKQTSNPQWPSVGEVVRMYERSIPAASLGDFKGLGARLC--------TLFDGALGNVLLYRFEMDQYLSLLELGGKSKLPHQIWGAEHLLRLLAIAPRLLGIQKSTSNKKRVDEESSDTLMNSEAPVGMEVERPGSREIEVARTYLQGLLDFLETEQASLFASYVE 572
            + + IP AL+ QL +DW  IT+ + +V +LPR                  P+V E+++ Y+ S+ +     F    A +           FD  LGN+LLYRFE  QY S +    K K    I+GAEHLLRL    P L+           +D +S                      I++ + Y++  L FL   Q+  F    E
Sbjct:  137 INIAIPDALKAQLVDDWENITKNQQLV-SLPRS-----------------PTVTEILQNYKNSVSSTQKKRFSNADADIFEEVISGIKLYFDRCLGNILLYRFERQQY-SDIRKTYKDKEMSDIYGAEHLLRLFVSLPELIA-------HTNMDHQS----------------------IQILKNYIKEFLKFLTKNQSEYFLKVYE 295          
The following BLAST results are available for this feature:
BLAST of EWM25123.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106761|gb|EWM25123.1|0.000e+0100.00hypothetical protein Naga_100016g52 [Nannochlorops... [more]
gi|1034733850|gb|OAV88052.1|3.144e-1330.85hypothetical protein PTTG_05657 [Puccinia triticin... [more]
gi|909606633|gb|KNE96992.1|1.481e-1230.14hypothetical protein PSTG_09730 [Puccinia striifor... [more]
gi|296420776|ref|XP_002839944.1|3.018e-1233.56hypothetical protein [Tuber melanosporum Mel28] >g... [more]
gi|403175276|ref|XP_003334123.2|4.178e-1231.37hypothetical protein PGTG_15360 [Puccinia graminis... [more]
gi|1063244185|gb|ODQ66960.1|7.573e-1227.32MRG-domain-containing protein [Nadsonia fulvescens... [more]
gi|667791939|ref|XP_007875107.1|1.212e-1128.99hypothetical protein PNEG_03052 [Pneumocystis muri... [more]
gi|403175927|ref|XP_003334668.2|2.806e-1130.88hypothetical protein PGTG_16527 [Puccinia graminis... [more]
gi|1069856330|ref|XP_018227689.1|6.107e-1128.50hypothetical protein T552_00211 [Pneumocystis cari... [more]
gi|1069889155|ref|XP_018228074.1|1.083e-1028.02hypothetical protein T551_03462 [Pneumocystis jiro... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5556rna5556Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications