EWM25087.1, cds5530 (CDS) Nannochloropsis gaditana

Overview
NameEWM25087.1
Unique Namecds5530
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:252533..252853 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25087.1
Producttransmembrane protein 14
Orig transcript idgnl|cribi|Naga_100016g65.2896.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:252533..252853 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR005349UPF0136_TM
Homology
BLAST of EWM25087.1 vs. NCBI_GenBank
Match: gi|585106725|gb|EWM25087.1| (transmembrane protein 14 [Nannochloropsis gaditana])

HSP 1 Score: 207.608 bits (527), Expect = 9.059e-68
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0
Query:    1 MGGSAHASYAVGTILCAGGLAGYVRTQSKPSLYAGVGLGSLMVVSGMVIQSGDDFRGHTLALIASGLVVGGTLPRAIKTQKVVPTAIALQGLVSGVYQGRKVWEWL 106
            MGGSAHASYAVGTILCAGGLAGYVRTQSKPSLYAGVGLGSLMVVSGMVIQSGDDFRGHTLALIASGLVVGGTLPRAIKTQKVVPTAIALQGLVSGVYQGRKVWEWL
Sbjct:    1 MGGSAHASYAVGTILCAGGLAGYVRTQSKPSLYAGVGLGSLMVVSGMVIQSGDDFRGHTLALIASGLVVGGTLPRAIKTQKVVPTAIALQGLVSGVYQGRKVWEWL 106          
BLAST of EWM25087.1 vs. NCBI_GenBank
Match: gi|1069936536|ref|XP_018298401.1| (hypothetical protein PHYBLDRAFT_55743 [Phycomyces blakesleeanus NRRL 1555(-)] >gi|1026596011|gb|OAD80361.1| hypothetical protein PHYBLDRAFT_55743 [Phycomyces blakesleeanus NRRL 1555(-)])

HSP 1 Score: 87.8113 bits (216), Expect = 1.744e-20
Identity = 46/104 (44.23%), Postives = 71/104 (68.27%), Query Frame = 0
Query:    4 SAHASYAVGTILCAGGLAGYVRTQSKPSLYAGVGLGSLMVVSGMVIQSGDDFRGHTLALIASGLVVGGTLPRAIKTQ--KVVPTAIALQGLVSGVYQGRKVWEW 105
            S+H ++ +  +   GG+AG+ RT+S PSL AGVG+GSL  V+G +I+   D+ GH  A++AS L+ GG +PRAIKTQ  K VP A+++  + +G Y  +KV ++
Sbjct:    2 SSHTAFTMAALSATGGIAGFARTRSFPSLIAGVGIGSLYGVAGYLIKENKDY-GHETAVVASTLLAGGMIPRAIKTQFKKPVPVALSVISIAAGAYYVKKVIDY 104          
BLAST of EWM25087.1 vs. NCBI_GenBank
Match: gi|727140681|emb|CEG76851.1| (Putative UPF0136 domain protein [Rhizopus microsporus] >gi|727147238|emb|CEG70328.1| Putative UPF0136 domain protein [Rhizopus microsporus] >gi|729698118|emb|CEJ04563.1| Putative UPF0136 domain protein [Rhizopus microsporus] >gi|729713080|emb|CEI90588.1| Putative UPF0136 domain protein [Rhizopus microsporus] >gi|1178056247|gb|ORE11617.1| TMEM14-domain-containing protein [Rhizopus microsporus var. microsporus] >gi|1178067740|gb|ORE22139.1| TMEM14-domain-containing protein [Rhizopus microsporus])

HSP 1 Score: 86.6557 bits (213), Expect = 4.655e-20
Identity = 47/102 (46.08%), Postives = 69/102 (67.65%), Query Frame = 0
Query:    4 SAHASYAVGTILCAGGLAGYVRTQSKPSLYAGVGLGSLMVVSGMVIQSGDDFRGHTLALIASGLVVGGTLPRAIKTQKVVPTAIALQGLVSGVYQGRKVWEW 105
            S H SY +  +  AGG+AG+VRT+S PSL AG+G+G+L   +G +IQ   D+ GH  A+ AS ++ G  +PRAIKT+K VP A+++  L +G Y  +KV E+
Sbjct:    2 SHHPSYTMAGLCAAGGIAGFVRTRSVPSLAAGLGVGALYGAAGYLIQQNRDY-GHETAVAASVILGGAMIPRAIKTRKPVPVALSVISLAAGTYYVKKVIEY 102          
BLAST of EWM25087.1 vs. NCBI_GenBank
Match: gi|1043305613|gb|OBZ90268.1| (hypothetical protein A0J61_01677 [Choanephora cucurbitarum])

HSP 1 Score: 84.7297 bits (208), Expect = 2.878e-19
Identity = 45/102 (44.12%), Postives = 68/102 (66.67%), Query Frame = 0
Query:    4 SAHASYAVGTILCAGGLAGYVRTQSKPSLYAGVGLGSLMVVSGMVIQSGDDFRGHTLALIASGLVVGGTLPRAIKTQKVVPTAIALQGLVSGVYQGRKVWEW 105
            S H SY +  +  AGG+AG+ RT+S PSL AG+G+G+L   +G ++Q   D+ GH  A+ AS ++ G  +PRA+KT+K VP A++L  L +G Y  +KV E+
Sbjct:    2 SHHPSYTMAGLCAAGGIAGFARTRSVPSLVAGLGVGALYGTAGYLMQENKDY-GHETAVAASVILGGAMIPRAVKTRKPVPIALSLISLAAGSYYVKKVIEY 102          
BLAST of EWM25087.1 vs. NCBI_GenBank
Match: gi|1183499798|gb|ORZ23440.1| (transmembrane proteins 14C-domain-containing protein [Absidia repens])

HSP 1 Score: 83.9593 bits (206), Expect = 6.415e-19
Identity = 45/102 (44.12%), Postives = 68/102 (66.67%), Query Frame = 0
Query:    4 SAHASYAVGTILCAGGLAGYVRTQSKPSLYAGVGLGSLMVVSGMVIQSGDDFRGHTLALIASGLVVGGTLPRAIKTQKVVPTAIALQGLVSGVYQGRKVWEW 105
            S H +YA+  +  AGG+ G+ RT+S PSL AGVGLG+L   +G + Q  ++  G+ LA+ +S ++ G  +PRAIKT+K VP A+AL  L +G Y  +KV ++
Sbjct:    2 SHHPAYAMSALCFAGGIGGFARTRSLPSLIAGVGLGTLYGAAGYISQ--ENVNGYKLAVGSSVVLAGAMIPRAIKTKKPVPIALALTSLAAGAYYTKKVIDY 101          
BLAST of EWM25087.1 vs. NCBI_GenBank
Match: gi|1021061181|emb|SAM02906.1| (hypothetical protein [Absidia glauca])

HSP 1 Score: 82.8037 bits (203), Expect = 1.526e-18
Identity = 44/102 (43.14%), Postives = 67/102 (65.69%), Query Frame = 0
Query:    4 SAHASYAVGTILCAGGLAGYVRTQSKPSLYAGVGLGSLMVVSGMVIQSGDDFRGHTLALIASGLVVGGTLPRAIKTQKVVPTAIALQGLVSGVYQGRKVWEW 105
            S H +Y++  +   GG+AG+ RT+S PSL+AG+G+G L  V+G +I    +  GH LA+  S L+ G  LPRAIKT+K +P A+A+  L +G Y  +KV ++
Sbjct:    2 SHHTAYSMSALCVTGGIAGFARTKSLPSLFAGIGIGGLYGVAGYLIGENAN-GGHELAVGTSVLLTGAMLPRAIKTRKPLPIALAVTSLAAGAYYTKKVIDY 102          
BLAST of EWM25087.1 vs. NCBI_GenBank
Match: gi|384499465|gb|EIE89956.1| (hypothetical protein RO3G_14667 [Rhizopus delemar RA 99-880])

HSP 1 Score: 82.0333 bits (201), Expect = 3.532e-18
Identity = 43/102 (42.16%), Postives = 67/102 (65.69%), Query Frame = 0
Query:    4 SAHASYAVGTILCAGGLAGYVRTQSKPSLYAGVGLGSLMVVSGMVIQSGDDFRGHTLALIASGLVVGGTLPRAIKTQKVVPTAIALQGLVSGVYQGRKVWEW 105
            S H SY +  +  AGG+ G+ RT+S PSL AG+G+G+L   +G +IQ   D+ GH  A+ AS ++ G  +PRAIKT+K +P A+++  L +G Y  +K+ E+
Sbjct:    2 SHHPSYTMAGLCVAGGVIGFARTRSVPSLVAGLGVGALYGAAGRLIQQNKDY-GHETAVAASAILGGAMIPRAIKTKKPLPIALSVISLTAGSYYVKKIIEY 102          
BLAST of EWM25087.1 vs. NCBI_GenBank
Match: gi|511008060|gb|EPB89332.1| (hypothetical protein HMPREF1544_03841 [Mucor circinelloides f. circinelloides 1006PhL])

HSP 1 Score: 80.4925 bits (197), Expect = 1.292e-17
Identity = 44/102 (43.14%), Postives = 67/102 (65.69%), Query Frame = 0
Query:    4 SAHASYAVGTILCAGGLAGYVRTQSKPSLYAGVGLGSLMVVSGMVIQSGDDFRGHTLALIASGLVVGGTLPRAIKTQKVVPTAIALQGLVSGVYQGRKVWEW 105
            S H SY +  +   GG+AG+ +T+S PSL AG+G+G+L   +G +IQ   D+ GH  A+ AS L+ G  +PRA+KT+K VP A+++  L +G Y  +KV E+
Sbjct:    2 SQHPSYTMAGLCAVGGVAGFAKTRSVPSLVAGLGVGALYGAAGYLIQQNRDY-GHETAVAASTLLGGAMIPRALKTRKPVPIALSVISLAAGGYYVKKVIEY 102          
BLAST of EWM25087.1 vs. NCBI_GenBank
Match: gi|758362776|emb|CEP14760.1| (hypothetical protein [Parasitella parasitica])

HSP 1 Score: 80.1073 bits (196), Expect = 1.678e-17
Identity = 44/102 (43.14%), Postives = 67/102 (65.69%), Query Frame = 0
Query:    4 SAHASYAVGTILCAGGLAGYVRTQSKPSLYAGVGLGSLMVVSGMVIQSGDDFRGHTLALIASGLVVGGTLPRAIKTQKVVPTAIALQGLVSGVYQGRKVWEW 105
            S H SY +  +   GG+AG+ +T+S PSL AG+G+G+L   +G +IQ   D+ GH  A+ AS L+ G  +PRA+KT+K VP A+++  L +G Y  +KV E+
Sbjct:    2 SHHPSYTLAGLCAVGGVAGFAKTRSVPSLVAGLGVGALYGAAGYLIQQNRDY-GHETAVAASTLLGGAMIPRALKTRKPVPIALSVISLAAGGYYVKKVIEY 102          
BLAST of EWM25087.1 vs. NCBI_GenBank
Match: gi|301117838|ref|XP_002906647.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262107996|gb|EEY66048.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 79.7221 bits (195), Expect = 2.559e-17
Identity = 41/101 (40.59%), Postives = 64/101 (63.37%), Query Frame = 0
Query:    6 HASYAVGTILCAGGLAGYVRTQSKPSLYAGVGLGSLMVVSGMVIQSGDDFRGHTLALIASGLVVGGTLPRAIKTQKVVPTAIALQGLVSGVYQGRKVWEWL 106
            HA+Y +  +L AGG+ GY++T+S PSL AGV LG+   V+G ++Q G+   GH + L+ S + +G    RA++T+K +P +IA  G +S  Y   +  EWL
Sbjct:    4 HATYTMAGVLTAGGVFGYLKTKSVPSLVAGVTLGAGFGVAGYLLQKGEMTNGHGMGLLMSSITMGAMGVRAVRTKKPLPVSIASLGALSAAYHAHRFTEWL 104          
The following BLAST results are available for this feature:
BLAST of EWM25087.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106725|gb|EWM25087.1|9.059e-68100.00transmembrane protein 14 [Nannochloropsis gaditana... [more]
gi|1069936536|ref|XP_018298401.1|1.744e-2044.23hypothetical protein PHYBLDRAFT_55743 [Phycomyces ... [more]
gi|727140681|emb|CEG76851.1|4.655e-2046.08Putative UPF0136 domain protein [Rhizopus microspo... [more]
gi|1043305613|gb|OBZ90268.1|2.878e-1944.12hypothetical protein A0J61_01677 [Choanephora cucu... [more]
gi|1183499798|gb|ORZ23440.1|6.415e-1944.12transmembrane proteins 14C-domain-containing prote... [more]
gi|1021061181|emb|SAM02906.1|1.526e-1843.14hypothetical protein [Absidia glauca][more]
gi|384499465|gb|EIE89956.1|3.532e-1842.16hypothetical protein RO3G_14667 [Rhizopus delemar ... [more]
gi|511008060|gb|EPB89332.1|1.292e-1743.14hypothetical protein HMPREF1544_03841 [Mucor circi... [more]
gi|758362776|emb|CEP14760.1|1.678e-1743.14hypothetical protein [Parasitella parasitica][more]
gi|301117838|ref|XP_002906647.1|2.559e-1740.59conserved hypothetical protein [Phytophthora infes... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5544rna5544Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications