EWM25088.1, cds5517 (CDS) Nannochloropsis gaditana

Overview
NameEWM25088.1
Unique Namecds5517
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:216598..216653 +
Alignment locationCM002466.1:216721..216845 +
Alignment locationCM002466.1:217033..217196 +
Alignment locationCM002466.1:217342..217471 +
Alignment locationCM002466.1:217565..217725 +
Alignment locationCM002466.1:217938..218051 +
Alignment locationCM002466.1:218196..218312 +
Alignment locationCM002466.1:218537..218598 +
Alignment locationCM002466.1:218753..218924 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25088.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100016g78.2897.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:216598..216653 +
CM002466.1supercontigCM002466.1:216721..216845 +
CM002466.1supercontigCM002466.1:217033..217196 +
CM002466.1supercontigCM002466.1:217342..217471 +
CM002466.1supercontigCM002466.1:217565..217725 +
CM002466.1supercontigCM002466.1:217938..218051 +
CM002466.1supercontigCM002466.1:218196..218312 +
CM002466.1supercontigCM002466.1:218537..218598 +
CM002466.1supercontigCM002466.1:218753..218924 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR009009RlpA-like_DPBB
Homology
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BLAST of EWM25088.1 vs. NCBI_GenBank
Match: gi|585106726|gb|EWM25088.1| (hypothetical protein Naga_100016g78 [Nannochloropsis gaditana])

HSP 1 Score: 765.763 bits (1976), Expect = 0.000e+0
Identity = 366/366 (100.00%), Postives = 366/366 (100.00%), Query Frame = 0 
Query:    1 MRSWSSFCFAVAAGALILRSASAACEKPSQDIACMFQEPIEAAAGSYNSLTHQVAYCKMQGYDTVSRASSEGPSVFTSGLVKIGVGLAHNQFGSAADPSWLNLPEGAATCGMCLEVTKVSNMPAIADDLITWDYDRNMTVPFLAMVFDQCTDEICDQSGYLDFDVYSETQPVKKGNPRLMEWRAVDCPVGETHKLEYLVCTPGTCNADDPRSVPNFGAIFNPDFFAVFVRNHRLPVIKVEMEDPDTIAGVPSFRDMPFTSGLGWTWSGKTFQMDEAKDIKIRVTAADGQIVTERFTKSQFLDSPGAPAYRGGLLLHGQKQFSPSKFSASKQLMANMKEDTEAQSNKYVSLRGSMIDGEGKEKSGDA 366
            MRSWSSFCFAVAAGALILRSASAACEKPSQDIACMFQEPIEAAAGSYNSLTHQVAYCKMQGYDTVSRASSEGPSVFTSGLVKIGVGLAHNQFGSAADPSWLNLPEGAATCGMCLEVTKVSNMPAIADDLITWDYDRNMTVPFLAMVFDQCTDEICDQSGYLDFDVYSETQPVKKGNPRLMEWRAVDCPVGETHKLEYLVCTPGTCNADDPRSVPNFGAIFNPDFFAVFVRNHRLPVIKVEMEDPDTIAGVPSFRDMPFTSGLGWTWSGKTFQMDEAKDIKIRVTAADGQIVTERFTKSQFLDSPGAPAYRGGLLLHGQKQFSPSKFSASKQLMANMKEDTEAQSNKYVSLRGSMIDGEGKEKSGDA
Sbjct:    1 MRSWSSFCFAVAAGALILRSASAACEKPSQDIACMFQEPIEAAAGSYNSLTHQVAYCKMQGYDTVSRASSEGPSVFTSGLVKIGVGLAHNQFGSAADPSWLNLPEGAATCGMCLEVTKVSNMPAIADDLITWDYDRNMTVPFLAMVFDQCTDEICDQSGYLDFDVYSETQPVKKGNPRLMEWRAVDCPVGETHKLEYLVCTPGTCNADDPRSVPNFGAIFNPDFFAVFVRNHRLPVIKVEMEDPDTIAGVPSFRDMPFTSGLGWTWSGKTFQMDEAKDIKIRVTAADGQIVTERFTKSQFLDSPGAPAYRGGLLLHGQKQFSPSKFSASKQLMANMKEDTEAQSNKYVSLRGSMIDGEGKEKSGDA 366
The following BLAST results are available for this feature:
BLAST of EWM25088.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585106726|gb|EWM25088.1|0.000e+0100.00hypothetical protein Naga_100016g78 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5531rna5531Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications