EWM25186.1, cds5487 (CDS) Nannochloropsis gaditana

Overview
NameEWM25186.1
Unique Namecds5487
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:122043..122513 +
Alignment locationCM002466.1:122849..122949 +
Alignment locationCM002466.1:123130..123478 +
Alignment locationCM002466.1:123621..124181 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25186.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100146g7.3714.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:122043..122513 +
CM002466.1supercontigCM002466.1:122849..122949 +
CM002466.1supercontigCM002466.1:123130..123478 +
CM002466.1supercontigCM002466.1:123621..124181 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003700DNA-binding transcription factor activity
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
BLAST of EWM25186.1 vs. NCBI_GenBank
Match: gi|585106848|gb|EWM25186.1| (hypothetical protein Naga_100146g7 [Nannochloropsis gaditana])

HSP 1 Score: 1010.36 bits (2611), Expect = 0.000e+0
Identity = 493/493 (100.00%), Postives = 493/493 (100.00%), Query Frame = 0
Query:    1 MKRKAYKMNALLALCGNSREQDEGRKGTVADGGDIKLQKDSKENGVQEEDERDVDLYKEVKAGLGVFTDARKIREAEEGKGGLRGRETREGATVLSAGKEAALSTMESKKALRASLCEDNQEDKMARGKGKTTYRLAQRGDRPAPRGGTCLECKTSKVKCDKVQPRCTRCARHGFLCIPQTRGQGRPAKWRMYLAEDAAIQKEGDLWNAHSKALLLSAAQARSKEESISASSDPVRPAYLPPSGLPGLTSTTRGTSLPASPPLPASLSPPLSDITGVSSSFRPPHSQFSSSFLTRASGKRQMPPCSEAEDRLVAARSLKCLKNGDASPFPPPHPIVGSTSRPVHPSFPSFATVAGTRGAVDRNNYLGNGMGGYYSHGYPGSTQPNRPYSTPLRDMSLGTTDRVSYVPPNDIFLDPVFPRCPPSAHFSTLQHPCYMGKPVTPPFVPSMGAPPSHPPLHSSWAPALQPGGKFVPVGAPMTISEWLGKGMDGWRQR 493
            MKRKAYKMNALLALCGNSREQDEGRKGTVADGGDIKLQKDSKENGVQEEDERDVDLYKEVKAGLGVFTDARKIREAEEGKGGLRGRETREGATVLSAGKEAALSTMESKKALRASLCEDNQEDKMARGKGKTTYRLAQRGDRPAPRGGTCLECKTSKVKCDKVQPRCTRCARHGFLCIPQTRGQGRPAKWRMYLAEDAAIQKEGDLWNAHSKALLLSAAQARSKEESISASSDPVRPAYLPPSGLPGLTSTTRGTSLPASPPLPASLSPPLSDITGVSSSFRPPHSQFSSSFLTRASGKRQMPPCSEAEDRLVAARSLKCLKNGDASPFPPPHPIVGSTSRPVHPSFPSFATVAGTRGAVDRNNYLGNGMGGYYSHGYPGSTQPNRPYSTPLRDMSLGTTDRVSYVPPNDIFLDPVFPRCPPSAHFSTLQHPCYMGKPVTPPFVPSMGAPPSHPPLHSSWAPALQPGGKFVPVGAPMTISEWLGKGMDGWRQR
Sbjct:    1 MKRKAYKMNALLALCGNSREQDEGRKGTVADGGDIKLQKDSKENGVQEEDERDVDLYKEVKAGLGVFTDARKIREAEEGKGGLRGRETREGATVLSAGKEAALSTMESKKALRASLCEDNQEDKMARGKGKTTYRLAQRGDRPAPRGGTCLECKTSKVKCDKVQPRCTRCARHGFLCIPQTRGQGRPAKWRMYLAEDAAIQKEGDLWNAHSKALLLSAAQARSKEESISASSDPVRPAYLPPSGLPGLTSTTRGTSLPASPPLPASLSPPLSDITGVSSSFRPPHSQFSSSFLTRASGKRQMPPCSEAEDRLVAARSLKCLKNGDASPFPPPHPIVGSTSRPVHPSFPSFATVAGTRGAVDRNNYLGNGMGGYYSHGYPGSTQPNRPYSTPLRDMSLGTTDRVSYVPPNDIFLDPVFPRCPPSAHFSTLQHPCYMGKPVTPPFVPSMGAPPSHPPLHSSWAPALQPGGKFVPVGAPMTISEWLGKGMDGWRQR 493          
BLAST of EWM25186.1 vs. NCBI_GenBank
Match: gi|553184335|ref|XP_005854071.1| (hypothetical protein NGA_0504600 [Nannochloropsis gaditana CCMP526] >gi|422294989|gb|EKU22288.1| hypothetical protein NGA_0504600 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 320.087 bits (819), Expect = 7.621e-105
Identity = 160/168 (95.24%), Postives = 162/168 (96.43%), Query Frame = 0
Query:    1 MKRKAYKMNALLALCGNSREQDEGRKGTVADGGDIKLQKDSKENGVQEEDERDVDLYKEVKAGLGVFTDARKIREAEEGKGGLRGRETREGATVLSAGKEAALSTMESKKALRASLCEDNQEDKMARGKGKTTYRLAQRGDRPAPRGGTCLECKTSKVKCDKVQPRCT 168
            MKRKAYKMNALLALCGNSREQDEGRKGTVADGGDIKLQKDSKENGVQEEDERDVDLYKEVKAGLGVFTDARKIREAEEGKGGLRGRETREGATVLSAGKEAALSTMESKKALRASLCEDNQEDKMARGKGKTTYRLAQRGDRPAPRGGTCLECKTSKV+  +    CT
Sbjct:    1 MKRKAYKMNALLALCGNSREQDEGRKGTVADGGDIKLQKDSKENGVQEEDERDVDLYKEVKAGLGVFTDARKIREAEEGKGGLRGRETREGATVLSAGKEAALSTMESKKALRASLCEDNQEDKMARGKGKTTYRLAQRGDRPAPRGGTCLECKTSKVRDARQSGGCT 168          
BLAST of EWM25186.1 vs. NCBI_GenBank
Match: gi|585106850|gb|EWM25188.1| (c6 finger domain protein [Nannochloropsis gaditana])

HSP 1 Score: 116.316 bits (290), Expect = 1.052e-24
Identity = 69/189 (36.51%), Postives = 96/189 (50.79%), Query Frame = 0
Query:   34 DIKLQKDSKENGVQEEDERDVDLYKEVKAGLGVFTDARKIREAEEGKGGLRGRETREGAT-------VLSAGKEAALSTMESKKALRASLCEDNQEDKMARGKGKTTYRLAQRGDRPAPRGGTCLECKTSKVKCDKVQPRCTRCARHGFLCIPQTRGQGRPAKWRMYLAEDAAIQKEGDLWNAHSKALL 215
            D+   +  +E G   + E++     +V     + +  R +    E KGG  GR+  +G T       V   GK A     ES+ A    +  +N++DK      K  Y+         PRG  CLECK SKVKCD+ QP CTRC  HGFLCIPQ RG GRPAKWR+YLA++ A+     LW   ++ ++
Sbjct:   15 DVPRSQSKREGGENPQKEKENSNDHKVDREKLIASLDRSVGGLHEVKGGKEGRDDLQGDTRPMTSEAVFPEGKHADEWDDESQHAALQGVATENKDDKK-----KPKYQ--------GPRGRACLECKMSKVKCDRKQPHCTRCVSHGFLCIPQNRGPGRPAKWRLYLADEDALDSSS-LWAGQARTMI 189          
BLAST of EWM25186.1 vs. NCBI_GenBank
Match: gi|585106849|gb|EWM25187.1| (hypothetical protein Naga_100146g5 [Nannochloropsis gaditana])

HSP 1 Score: 67.0106 bits (162), Expect = 3.417e-8
Identity = 78/221 (35.29%), Postives = 105/221 (47.51%), Query Frame = 0
Query:  191 RMYLAEDAAIQKEGDLWNAHSKALLLSAAQARSKEESISASSDPVRPAYLPPSGLPGLTSTTRGTSLPASPPLPASLSPPLSDITGVSSSFRPP------HSQFSSSFLTRASGKRQMPPCSEAEDRLVAARSLKCLKNGDASPFPPPHPIVGSTSRPVHP--SFPSFATVAG-------TRGAVDRNNYLGNGMGG-YYSHGYPGSTQPNRPYSTPLRDM 395
            R+YLA D A+Q   D+    SKALLLS++Q      S SAS +P     LPPS LP   S+         PP PAS+ P L   +  ++   PP          S  +     GKR+  P +E E +++AARSLK LK+G AS FP       S+S P +   SFPS    A          G+++ N  L +G GG + SH  P   Q    Y   +R+M
Sbjct:  158 RLYLAADDAVQDGKDVLATQSKALLLSSSQLPPPPTSNSASYEPA----LPPSLLPSFPSSF--------PPNPASVGPLLQLSSAATT---PPLSSISSAPSVSPPYYPNPLGKREEHPVNEVESQMLAARSLKHLKDGHAS-FP-------SSSTPAYASSSFPSRGPPASEGRLYGPMHGSMNPN--LSSGYGGNFQSHLLPPGYQSYPSYGN-IREM 352          
BLAST of EWM25186.1 vs. NCBI_GenBank
Match: gi|585106853|gb|EWM25191.1| (c6 finger domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 65.4698 bits (158), Expect = 1.183e-7
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 0
Query:  147 GGTCLECKTSKVKCDKVQPRCTRCARHGFLCIPQTRGQGRPAKWRMYLA 195
            G TCLECK SKVKCD+ QP CTRCAR    C+PQ R  GRP +W  Y++
Sbjct:   75 GRTCLECKRSKVKCDRKQPSCTRCARSNLKCLPQKRKPGRP-RWGPYIS 122          
The following BLAST results are available for this feature:
BLAST of EWM25186.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585106848|gb|EWM25186.1|0.000e+0100.00hypothetical protein Naga_100146g7 [Nannochloropsi... [more]
gi|553184335|ref|XP_005854071.1|7.621e-10595.24hypothetical protein NGA_0504600 [Nannochloropsis ... [more]
gi|585106850|gb|EWM25188.1|1.052e-2436.51c6 finger domain protein [Nannochloropsis gaditana... [more]
gi|585106849|gb|EWM25187.1|3.417e-835.29hypothetical protein Naga_100146g5 [Nannochloropsi... [more]
gi|585106853|gb|EWM25191.1|1.183e-761.22c6 finger domain-containing protein [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5501rna5501Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications