EWM25191.1, cds5482 (CDS) Nannochloropsis gaditana

Overview
NameEWM25191.1
Unique Namecds5482
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:99906..100160 +
Alignment locationCM002466.1:100553..100650 +
Alignment locationCM002466.1:100824..100858 +
Alignment locationCM002466.1:101460..102003 +
Alignment locationCM002466.1:102141..102564 +
Alignment locationCM002466.1:102788..102891 +
Alignment locationCM002466.1:103029..103176 +
Alignment locationCM002466.1:103300..103410 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25191.1
Productc6 finger domain-containing protein
Orig transcript idgnl|cribi|Naga_100146g2.3719.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:99906..100160 +
CM002466.1supercontigCM002466.1:100553..100650 +
CM002466.1supercontigCM002466.1:100824..100858 +
CM002466.1supercontigCM002466.1:101460..102003 +
CM002466.1supercontigCM002466.1:102141..102564 +
CM002466.1supercontigCM002466.1:102788..102891 +
CM002466.1supercontigCM002466.1:103029..103176 +
CM002466.1supercontigCM002466.1:103300..103410 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003700DNA-binding transcription factor activity
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
[Close]
BLAST of EWM25191.1 vs. NCBI_GenBank
Match: gi|585106853|gb|EWM25191.1| (c6 finger domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 1174.07 bits (3036), Expect = 0.000e+0
Identity = 572/572 (100.00%), Postives = 572/572 (100.00%), Query Frame = 0 
Query:    1 MREEENKGQHHVHEEEEQKKAMKCGTMISSKNPSAACRTFWMAGQPLDPMVAQRKGDAPGGGEVQRAPRRRLRDGRTCLECKRSKVKCDRKQPSCTRCARSNLKCLPQKRKPGRPRWGPYISIMGDSRGGPSSTSLPPPRTWLGPSGPTLVPALPSSERPRGVTGGREGGLDRLPVSKAVTQTAPGMHMLYQLQQQQERQQQEQQLQQHHHHYHHHHHQQGQHQEQQPRRGGPTPQTQSAWHRKPSHPSLVAASVTPRTQDPETGGGQRMGRGEEGVRKEGGGDQDGTFLSRIAAFLQQNTLQGTKPRATLHTWHHWGQYHGQDGTKGLLPLLSVLMQVSLPPSRPPSTAARTFQASGGGGGLRGCEEVTKGGDSEGMVTQKTIDWEKGGEEGGFEGRKMREMMRARWLAIKSQTIKQEKGEGGGGGKGGGNRTDASPSDEERMLTFLRVGKGISHCGPACCTIGFHRDAGVSVDVNERFENRFMSRNSLQASTLIPPLLWQQCIASESRDAYVDIFLNLVFGPSPVPTEVRSELLVQDRGGVIVPARVCLRYFVSDNGNMHAIMLAIEPYR 572
            MREEENKGQHHVHEEEEQKKAMKCGTMISSKNPSAACRTFWMAGQPLDPMVAQRKGDAPGGGEVQRAPRRRLRDGRTCLECKRSKVKCDRKQPSCTRCARSNLKCLPQKRKPGRPRWGPYISIMGDSRGGPSSTSLPPPRTWLGPSGPTLVPALPSSERPRGVTGGREGGLDRLPVSKAVTQTAPGMHMLYQLQQQQERQQQEQQLQQHHHHYHHHHHQQGQHQEQQPRRGGPTPQTQSAWHRKPSHPSLVAASVTPRTQDPETGGGQRMGRGEEGVRKEGGGDQDGTFLSRIAAFLQQNTLQGTKPRATLHTWHHWGQYHGQDGTKGLLPLLSVLMQVSLPPSRPPSTAARTFQASGGGGGLRGCEEVTKGGDSEGMVTQKTIDWEKGGEEGGFEGRKMREMMRARWLAIKSQTIKQEKGEGGGGGKGGGNRTDASPSDEERMLTFLRVGKGISHCGPACCTIGFHRDAGVSVDVNERFENRFMSRNSLQASTLIPPLLWQQCIASESRDAYVDIFLNLVFGPSPVPTEVRSELLVQDRGGVIVPARVCLRYFVSDNGNMHAIMLAIEPYR
Sbjct:    1 MREEENKGQHHVHEEEEQKKAMKCGTMISSKNPSAACRTFWMAGQPLDPMVAQRKGDAPGGGEVQRAPRRRLRDGRTCLECKRSKVKCDRKQPSCTRCARSNLKCLPQKRKPGRPRWGPYISIMGDSRGGPSSTSLPPPRTWLGPSGPTLVPALPSSERPRGVTGGREGGLDRLPVSKAVTQTAPGMHMLYQLQQQQERQQQEQQLQQHHHHYHHHHHQQGQHQEQQPRRGGPTPQTQSAWHRKPSHPSLVAASVTPRTQDPETGGGQRMGRGEEGVRKEGGGDQDGTFLSRIAAFLQQNTLQGTKPRATLHTWHHWGQYHGQDGTKGLLPLLSVLMQVSLPPSRPPSTAARTFQASGGGGGLRGCEEVTKGGDSEGMVTQKTIDWEKGGEEGGFEGRKMREMMRARWLAIKSQTIKQEKGEGGGGGKGGGNRTDASPSDEERMLTFLRVGKGISHCGPACCTIGFHRDAGVSVDVNERFENRFMSRNSLQASTLIPPLLWQQCIASESRDAYVDIFLNLVFGPSPVPTEVRSELLVQDRGGVIVPARVCLRYFVSDNGNMHAIMLAIEPYR 572
[Close]
BLAST of EWM25191.1 vs. NCBI_GenBank
Match: gi|585106850|gb|EWM25188.1| (c6 finger domain protein [Nannochloropsis gaditana])

HSP 1 Score: 70.0922 bits (170), Expect = 3.540e-9
Identity = 35/72 (48.61%), Postives = 45/72 (62.50%), Query Frame = 0 
Query:   52 AQRKGDAPGGGEVQRAPRRRLRDGRTCLECKRSKVKCDRKQPSCTRCARSNLKCLPQKRKPGRP-RWGPYIS 122
            A  +G A    + ++ P+ +   GR CLECK SKVKCDRKQP CTRC      C+PQ R PGRP +W  Y++
Sbjct:   99 AALQGVATENKDDKKKPKYQGPRGRACLECKMSKVKCDRKQPHCTRCVSHGFLCIPQNRGPGRPAKWRLYLA 170
[Close]
BLAST of EWM25191.1 vs. NCBI_GenBank
Match: gi|585106848|gb|EWM25186.1| (hypothetical protein Naga_100146g7 [Nannochloropsis gaditana])

HSP 1 Score: 65.4698 bits (158), Expect = 1.498e-7
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 0 
Query:   75 GRTCLECKRSKVKCDRKQPSCTRCARSNLKCLPQKRKPGRP-RWGPYIS 122
            G TCLECK SKVKCD+ QP CTRCAR    C+PQ R  GRP +W  Y++
Sbjct:  147 GGTCLECKTSKVKCDKVQPRCTRCARHGFLCIPQTRGQGRPAKWRMYLA 195
The following BLAST results are available for this feature:
BLAST of EWM25191.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585106853|gb|EWM25191.1|0.000e+0100.00c6 finger domain-containing protein [Nannochlorops... [more]
gi|585106850|gb|EWM25188.1|3.540e-948.61c6 finger domain protein [Nannochloropsis gaditana... [more]
gi|585106848|gb|EWM25186.1|1.498e-761.22hypothetical protein Naga_100146g7 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5496rna5496Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications