EWM25209.1, cds5469 (CDS) Nannochloropsis gaditana

Overview
NameEWM25209.1
Unique Namecds5469
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:60493..60647 +
Alignment locationCM002466.1:61563..61930 +
Alignment locationCM002466.1:63068..63171 +
Alignment locationCM002466.1:63463..63564 +
Alignment locationCM002466.1:63733..63813 +
Alignment locationCM002466.1:64197..64295 +
Alignment locationCM002466.1:64608..64729 +
Alignment locationCM002466.1:65011..65434 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25209.1
Productn-glycosylase dna lyase
Orig transcript idgnl|cribi|Naga_100311g1.1359.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:60493..60647 +
CM002466.1supercontigCM002466.1:61563..61930 +
CM002466.1supercontigCM002466.1:63068..63171 +
CM002466.1supercontigCM002466.1:63463..63564 +
CM002466.1supercontigCM002466.1:63733..63813 +
CM002466.1supercontigCM002466.1:64197..64295 +
CM002466.1supercontigCM002466.1:64608..64729 +
CM002466.1supercontigCM002466.1:65011..65434 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006281DNA repair
GO:0006284base-excision repair
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR023170HTH_base_excis_C
IPR011257DNA_glycosylase
IPR003265HhH-GPD_domain
Homology
BLAST of EWM25209.1 vs. NCBI_GenBank
Match: gi|585106886|gb|EWM25209.1| (n-glycosylase dna lyase [Nannochloropsis gaditana])

HSP 1 Score: 999.579 bits (2583), Expect = 0.000e+0
Identity = 484/484 (100.00%), Postives = 484/484 (100.00%), Query Frame = 0
Query:    1 MMNLVRSIGANCCKLDLHDLRYVIRLRFIISNSILSYATKGLNDVSGCERGFASTYYPSFAQHRRLCLSRHQPAPNTPLRYKNKIQVVTPTGGIIAAPFRSISAVHFSPSSCPIPAASLGAVSMAPKRKLASTRLNLEEREYSAKGWMDLDVPPHELRPEFSLTMGQCFNWRRQDPVECLFSFICSSNNNIPRIALMLDRLRKTYGEPLGKGYHAFPPLSSLASASEEELRGLGLGYRARFIKLTASQLLDLGGREWLMSLREKSREEAQQALCAFPGVGRKVADCVALFSLDQHGAIPVDVHVWRIACRDYSPVLKEHKSLTPAVYEAVGDIFRNKFGSHAGWAHSLLFAAELPDYRARLPLFLQNEMLAFKKEEGIEKALKREAQKAKRKEKAEKGEEERATVIIEKTTEETIKDEILRTEERIVELEEEEGKVLRDVKTKAMSKRTKRQKVSISEEKNSCARTSMEAQGGGKHVKKEEKDS 484
            MMNLVRSIGANCCKLDLHDLRYVIRLRFIISNSILSYATKGLNDVSGCERGFASTYYPSFAQHRRLCLSRHQPAPNTPLRYKNKIQVVTPTGGIIAAPFRSISAVHFSPSSCPIPAASLGAVSMAPKRKLASTRLNLEEREYSAKGWMDLDVPPHELRPEFSLTMGQCFNWRRQDPVECLFSFICSSNNNIPRIALMLDRLRKTYGEPLGKGYHAFPPLSSLASASEEELRGLGLGYRARFIKLTASQLLDLGGREWLMSLREKSREEAQQALCAFPGVGRKVADCVALFSLDQHGAIPVDVHVWRIACRDYSPVLKEHKSLTPAVYEAVGDIFRNKFGSHAGWAHSLLFAAELPDYRARLPLFLQNEMLAFKKEEGIEKALKREAQKAKRKEKAEKGEEERATVIIEKTTEETIKDEILRTEERIVELEEEEGKVLRDVKTKAMSKRTKRQKVSISEEKNSCARTSMEAQGGGKHVKKEEKDS
Sbjct:    1 MMNLVRSIGANCCKLDLHDLRYVIRLRFIISNSILSYATKGLNDVSGCERGFASTYYPSFAQHRRLCLSRHQPAPNTPLRYKNKIQVVTPTGGIIAAPFRSISAVHFSPSSCPIPAASLGAVSMAPKRKLASTRLNLEEREYSAKGWMDLDVPPHELRPEFSLTMGQCFNWRRQDPVECLFSFICSSNNNIPRIALMLDRLRKTYGEPLGKGYHAFPPLSSLASASEEELRGLGLGYRARFIKLTASQLLDLGGREWLMSLREKSREEAQQALCAFPGVGRKVADCVALFSLDQHGAIPVDVHVWRIACRDYSPVLKEHKSLTPAVYEAVGDIFRNKFGSHAGWAHSLLFAAELPDYRARLPLFLQNEMLAFKKEEGIEKALKREAQKAKRKEKAEKGEEERATVIIEKTTEETIKDEILRTEERIVELEEEEGKVLRDVKTKAMSKRTKRQKVSISEEKNSCARTSMEAQGGGKHVKKEEKDS 484          
BLAST of EWM25209.1 vs. NCBI_GenBank
Match: gi|298713786|emb|CBJ27158.1| (endonuclease III/similar to 8-oxoguanine DNA glycosylase isoform 1b [Ectocarpus siliculosus])

HSP 1 Score: 255.758 bits (652), Expect = 1.079e-76
Identity = 132/248 (53.23%), Postives = 166/248 (66.94%), Query Frame = 0
Query:  173 RQDPVECLFSFICSSNNNIPRIALMLDRLRKTYGEPL---GKG-----------------------YHAFPPLSSLAS-ASEEELRGLGLGYRARFIKLTASQLLDLGGREWLMSLREKSREEAQQALCAFPGVGRKVADCVALFSLDQHGAIPVDVHVWRIACRDYSPVLKEHKSLTPAVYEAVGDIFRNKFGSHAGWAHSLLFAAELPDYRARLPLFLQNEMLAFKKEEGIEKALKREAQKAKRKE 393
            RQDPVEC+FSFICSSNNNIPRI  ML +LR+TYG+ L   GKG                        H+FP + +LA+ A+E +LR +G GYRA++I  +A  +   GG  W + +R K R+E +  L    GVG KVADC+ALFSLDQ   IPVDVHVWRIACRDY P L E KSLTP VY  VG++FR++FG  AGWAHSLLFAAELP ++A+L   +Q +M  FK+EE   KA + +A+KA+RKE
Sbjct:  150 RQDPVECIFSFICSSNNNIPRITGMLGKLRRTYGDLLLNVGKGGLAATGALGNITECEEWAKLPLELHSFPTVDALATRATEADLRAMGFGYRAKYIVDSAKLMHSNGGAGWALDMRNKDRDEVRSQLVTLCGVGPKVADCIALFSLDQASTIPVDVHVWRIACRDYDPTLVECKSLTPTVYARVGNLFRDRFGDRAGWAHSLLFAAELPGFKAKLSPEMQRQMDEFKREEREAKA-ESKAEKARRKE 396          
BLAST of EWM25209.1 vs. NCBI_GenBank
Match: gi|873240079|emb|CEL93771.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 236.113 bits (601), Expect = 7.299e-69
Identity = 127/273 (46.52%), Postives = 160/273 (58.61%), Query Frame = 0
Query:  173 RQDPVECLFSFICSSNNNIPRIALMLDRLRKTYGEPL----------------------------------------------------GKGYHAFPPLSSLASASEEELRGLGLGYRARFIKLTASQLLDLGGREWLMSLRE--KSREEAQQALCAFPGVGRKVADCVALFSLDQHGAIPVDVHVWRIACRDYSPVLKEHKSLTPAVYEAVGDIFRNKFGSHAGWAHSLLFAAELPDYRARLPLFLQNEMLAFKKEEGIEKALKREAQKAKR 391
            +QD  ECLF+FICSSNNNI RI LM+DRL++ YG+ +                                                    G  +++FP +  LA+ASE+ LR +GLGYRA+ +  TA  L +LGG  +L  L+    +R+E Q+ L  F GVGRKVADCV LFSLD+  AIPVD HVWRIACRD    L+  KSLTPAVY+ VGD+FR+++GS AGWAHSLLF AELP +RARLP  LQ EM  F   E   K  +R A+K +R
Sbjct:  145 QQDATECLFTFICSSNNNISRITLMIDRLKRHYGDLIATITSPTPTLTGAALQEHQDSISRDGSGGGLRSSSDERRAEEEGGGGEHAGSGYSWYSFPTIDRLAAASEQGLRSIGLGYRAKSVVETAKALKELGGEAFLQKLKSPTMTRQEVQKELLQFRGVGRKVADCVGLFSLDRFDAIPVDTHVWRIACRDLDRSLQSAKSLTPAVYDRVGDLFRDRYGSRAGWAHSLLFTAELPAFRARLPASLQQEMSEFAVSEKEAKKTERAARKRRR 417          
BLAST of EWM25209.1 vs. NCBI_GenBank
Match: gi|922854702|gb|KOO23215.1| (endonuclease iii 8-oxoguanine DNA glycosylase isoform 1b [Chrysochromulina sp. CCMP291])

HSP 1 Score: 229.95 bits (585), Expect = 7.925e-68
Identity = 133/262 (50.76%), Postives = 166/262 (63.36%), Query Frame = 0
Query:  173 RQDPVECLFSFICSSNNNIPRIALMLDRLRKTYGE-----------------------PLGKG----YHAFPPLSSLASASEEELRGLGLGYRARFIKLTASQLLDLGGREWLMSLR-EKSREEAQQALCAFPGVGRKVADCVALFSLDQHGAIPVDVHVWRIACRDYSPVLKEHKSLTPAVYEAVGDIFRNKFGSHAGWAHSLLFAAELPDYRARLPLFLQNEMLAFKKEEGIEKALKREAQKAKRKEKAE-KGEEERATV 405
            RQDP ECLFSFICSSNNNI RI  ML  +R+ YG                        P+G G    ++ FP  +++A+ASEEELR LGLGYRA +++ TA Q L   G  WL SLR E+     +  L   PGVG KVADCVALFSLDQH  +PVDVHVW IACR++ P L + KSLTP VY  VG+ FR  +GSHAGWAHS LFAAELP +R +LP  ++ +M  F + E  +KA+ R  +KA+ + KAE K E+E  T+
Sbjct:   15 RQDPEECLFSFICSSNNNIKRIGGMLQSIRQQYGTKIPLATLGAEAASEQAAATELSAPVGHGGAADFYTFPSAAAMAAASEEELRKLGLGYRAPYLRQTA-QRLTREGASWLKSLRMERDPNVVRATLTELPGVGPKVADCVALFSLDQHSCVPVDVHVWEIACREFDPTLAQEKSLTPKVYARVGEQFRRAYGSHAGWAHSYLFAAELPTFRDQLPEAMRQKMALFAEHEREKKAVARAEKKARAEAKAEIKDEDENKTL 275          
BLAST of EWM25209.1 vs. NCBI_GenBank
Match: gi|676386323|ref|XP_009036440.1| (hypothetical protein AURANDRAFT_3135, partial [Aureococcus anophagefferens] >gi|323452587|gb|EGB08460.1| hypothetical protein AURANDRAFT_3135, partial [Aureococcus anophagefferens])

HSP 1 Score: 221.476 bits (563), Expect = 7.975e-65
Identity = 116/213 (54.46%), Postives = 139/213 (65.26%), Query Frame = 0
Query:  173 RQDPVECLFSFICSSNNNIPRIALMLDRLRKTYGE----PLGKGYHA-----FPPLSSLASASEEELRGLGLGYRARFIKLTASQLLDLGGREWLMSLREKSREEAQQALCAFPGVGRKVADCVALFSLDQHGAIPVDVHVWRIACRDYSPVLKEHKSLTPAVYEAVGDIFRNKFGSHAGWAHSLLFAAELPDYRARLPLFLQNEMLAFKKEE 376
            RQDP+ECL SFICSSNNNIPRI LML RLR+  G+    P G G  A     FP L  L    E  LR LG GYRA ++  TA  + D GG  WL  LR   R + + AL    GVG KVADCVALFSLDQ  A+PVD HVWRIA RD+ P L +  S+TP VY+ VGD+FR++F  +AGWAH++LFAAELP +  +LP  +  EM AF+  E
Sbjct:  107 RQDPLECLISFICSSNNNIPRITLMLGRLRELCGDVAAVPGGAGMEASEPRTFPTLERLCGVEERTLRDLGFGYRAPYVAKTARHVRDKGGDAWLAGLRNADRADVKVALLECAGVGPKVADCVALFSLDQADAVPVDTHVWRIARRDFDPTLDDVASITPKVYDRVGDLFRDRF-DNAGWAHTVLFAAELPLFADKLPEDVAAEMRAFRVLE 318          
BLAST of EWM25209.1 vs. NCBI_GenBank
Match: gi|673030250|ref|XP_008869086.1| (hypothetical protein H310_05982 [Aphanomyces invadans] >gi|574475481|gb|ETW02481.1| hypothetical protein H310_05982 [Aphanomyces invadans])

HSP 1 Score: 221.09 bits (562), Expect = 4.080e-64
Identity = 109/194 (56.19%), Postives = 136/194 (70.10%), Query Frame = 0
Query:  173 RQDPVECLFSFICSSNNNIPRIALMLDRLRKTYGEPLGK----GYHAFPPLSSLASASEEELRGLGLGYRARFIKLTASQLLDLGGREWLMSLREK-SREEAQQALCAFPGVGRKVADCVALFSLDQHGAIPVDVHVWRIACRDYSPVLKEHKSLTPAVYEAVGDIFRNKFGSHAGWAHSLLFAAELPDYRARL 361
            RQDPVECLFSFICSSNNNI RI  ++D+LR  YG+ L       + AFP +  LAS  E +LR LG GYRA++I  +A+ L DLGG E+L+SLR        Q AL  F GVGRKVADCVALFSLD+  AIPVD HVW+I+CRD+       KSLTP +Y  VG +++N+F  +AGWAHS+LFAA+L  ++A L
Sbjct:  126 RQDPVECLFSFICSSNNNIARIQQLVDKLRVNYGDKLAAIDDMTWFAFPTVDQLASIDESQLRELGFGYRAQYIVKSAAILSDLGGEEYLLSLRANPDAAHVQTALTQFSGVGRKVADCVALFSLDKLEAIPVDTHVWQISCRDFQFKKAATKSLTPTIYAEVGKLYQNRFQPYAGWAHSILFAADLTKFKAIL 319          
BLAST of EWM25209.1 vs. NCBI_GenBank
Match: gi|567990042|gb|ETL40279.1| (hypothetical protein L916_08506 [Phytophthora parasitica])

HSP 1 Score: 222.631 bits (566), Expect = 4.450e-64
Identity = 120/243 (49.38%), Postives = 152/243 (62.55%), Query Frame = 0
Query:  173 RQDPVECLFSFICSSNNNIPRIALMLDRLRKTYGE---PLGKG------YHAFPPLSSLASASEE-ELRGLGLGYRARFIKLTASQLLDLGGREWLMSLR-----------EKSREEAQQALCAFPGVGRKVADCVALFSLDQHGAIPVDVHVWRIACRDYSPVLKEHKSLTPAVYEAVGDIFRNKFGSHAGWAHSLLFAAELPDYRARLPLFLQNEMLAFKKEEGIEKALKREAQKAKRKEK 394
            RQDPVECLFSFICSSNNNI RI  M+D+L+ TYG+    LG+G      ++AFP + +LA+  EE  LR LG GYRA FI  TA QL +LGG  +L ++R           E S    Q  L  F GVGRKVADCVALFSL++  AIPVD HVW+IACR+    L + KS+TP+VY  VGD+FR +F   AGWAHS+LFA +L  ++  +P              G+EK  K + + +KRK K
Sbjct:  164 RQDPVECLFSFICSSNNNITRIQGMVDKLKATYGDLLYKLGEGEEQQQPFYAFPSVDTLAAKCEEATLRALGFGYRAAFIVKTAKQLQELGGASYLDNIRDTKNVRQSGEKEVSYHAYQDELMVFSGVGRKVADCVALFSLEKLEAIPVDTHVWQIACRELDSTLSDRKSITPSVYRMVGDLFRTRFAPQAGWAHSVLFAGDLSAFKPTIP--------------GVEKKPKEKQKSSKRKFK 392          
BLAST of EWM25209.1 vs. NCBI_GenBank
Match: gi|570327727|gb|ETO75675.1| (hypothetical protein F444_08802 [Phytophthora parasitica P1976])

HSP 1 Score: 222.631 bits (566), Expect = 4.497e-64
Identity = 120/243 (49.38%), Postives = 152/243 (62.55%), Query Frame = 0
Query:  173 RQDPVECLFSFICSSNNNIPRIALMLDRLRKTYGE---PLGKG------YHAFPPLSSLASASEE-ELRGLGLGYRARFIKLTASQLLDLGGREWLMSLR-----------EKSREEAQQALCAFPGVGRKVADCVALFSLDQHGAIPVDVHVWRIACRDYSPVLKEHKSLTPAVYEAVGDIFRNKFGSHAGWAHSLLFAAELPDYRARLPLFLQNEMLAFKKEEGIEKALKREAQKAKRKEK 394
            RQDPVECLFSFICSSNNNI RI  M+D+L+ TYG+    LG+G      ++AFP + +LA+  EE  LR LG GYRA FI  TA QL +LGG  +L ++R           E S    Q  L  F GVGRKVADCVALFSL++  AIPVD HVW+IACR+    L + KS+TP+VY  VGD+FR +F   AGWAHS+LFA +L  ++  +P              G+EK  K + + +KRK K
Sbjct:  164 RQDPVECLFSFICSSNNNITRIQGMVDKLKATYGDLLYKLGEGEEQQQPFYAFPSVDTLAAKCEEATLRALGFGYRAAFIVKTAKQLQELGGASYLDNIRDTKNVRQSGEKEVSYHAYQDELMVFSGVGRKVADCVALFSLEKLEAIPVDTHVWQIACRELDSTLSDRKSITPSVYRMVGDLFRTRFAPQAGWAHSVLFAGDLSAFKPTIP--------------GVEKKPKEKQKSSKRKFK 392          
BLAST of EWM25209.1 vs. NCBI_GenBank
Match: gi|567961321|gb|ETK86866.1| (hypothetical protein L915_08576 [Phytophthora parasitica])

HSP 1 Score: 222.631 bits (566), Expect = 4.692e-64
Identity = 120/243 (49.38%), Postives = 152/243 (62.55%), Query Frame = 0
Query:  173 RQDPVECLFSFICSSNNNIPRIALMLDRLRKTYGE---PLGKG------YHAFPPLSSLASASEE-ELRGLGLGYRARFIKLTASQLLDLGGREWLMSLR-----------EKSREEAQQALCAFPGVGRKVADCVALFSLDQHGAIPVDVHVWRIACRDYSPVLKEHKSLTPAVYEAVGDIFRNKFGSHAGWAHSLLFAAELPDYRARLPLFLQNEMLAFKKEEGIEKALKREAQKAKRKEK 394
            RQDPVECLFSFICSSNNNI RI  M+D+L+ TYG+    LG+G      ++AFP + +LA+  EE  LR LG GYRA FI  TA QL +LGG  +L ++R           E S    Q  L  F GVGRKVADCVALFSL++  AIPVD HVW+IACR+    L + KS+TP+VY  VGD+FR +F   AGWAHS+LFA +L  ++  +P              G+EK  K + + +KRK K
Sbjct:  164 RQDPVECLFSFICSSNNNITRIQGMVDKLKATYGDLLYKLGEGEEQQQPFYAFPSVDTLAAKCEEATLRALGFGYRAAFIVKTAKQLQELGGASYLNNIRDTKNVRQSGEKEVSYHAYQDELMVFSGVGRKVADCVALFSLEKLEAIPVDTHVWQIACRELDSTLSDRKSITPSVYRMVGDLFRTRFAPQAGWAHSVLFAGDLSAFKPTIP--------------GVEKKPKEKQKSSKRKFK 392          
BLAST of EWM25209.1 vs. NCBI_GenBank
Match: gi|570985543|gb|ETP44804.1| (hypothetical protein F442_08681 [Phytophthora parasitica P10297])

HSP 1 Score: 222.246 bits (565), Expect = 6.516e-64
Identity = 120/243 (49.38%), Postives = 152/243 (62.55%), Query Frame = 0
Query:  173 RQDPVECLFSFICSSNNNIPRIALMLDRLRKTYGE---PLGKG------YHAFPPLSSLASASEE-ELRGLGLGYRARFIKLTASQLLDLGGREWLMSLR-----------EKSREEAQQALCAFPGVGRKVADCVALFSLDQHGAIPVDVHVWRIACRDYSPVLKEHKSLTPAVYEAVGDIFRNKFGSHAGWAHSLLFAAELPDYRARLPLFLQNEMLAFKKEEGIEKALKREAQKAKRKEK 394
            RQDPVECLFSFICSSNNNI RI  M+D+L+ TYG+    LG+G      ++AFP + +LA+  EE  LR LG GYRA FI  TA QL +LGG  +L ++R           E S    Q  L  F GVGRKVADCVALFSL++  AIPVD HVW+IACR+    L + KS+TP+VY  VGD+FR +F   AGWAHS+LFA +L  ++  +P              G+EK  K + + +KRK K
Sbjct:  164 RQDPVECLFSFICSSNNNITRIQGMVDKLKATYGDLLYKLGEGEEQQQPFYAFPSVDTLAAKCEEATLRALGFGYRAAFIVKTAKQLQELGGASYLDNIRDTKNVRQSGEKEVSYHAYQDELMVFSGVGRKVADCVALFSLEKLEAIPVDTHVWQIACRELDSTLSDRKSITPSVYRMVGDLFRTRFAPQAGWAHSVLFAGDLSAFKPTIP--------------GVEKKPKEKQKSSKRKFK 392          
The following BLAST results are available for this feature:
BLAST of EWM25209.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106886|gb|EWM25209.1|0.000e+0100.00n-glycosylase dna lyase [Nannochloropsis gaditana][more]
gi|298713786|emb|CBJ27158.1|1.079e-7653.23endonuclease III/similar to 8-oxoguanine DNA glyco... [more]
gi|873240079|emb|CEL93771.1|7.299e-6946.52unnamed protein product [Vitrella brassicaformis C... [more]
gi|922854702|gb|KOO23215.1|7.925e-6850.76endonuclease iii 8-oxoguanine DNA glycosylase isof... [more]
gi|676386323|ref|XP_009036440.1|7.975e-6554.46hypothetical protein AURANDRAFT_3135, partial [Aur... [more]
gi|673030250|ref|XP_008869086.1|4.080e-6456.19hypothetical protein H310_05982 [Aphanomyces invad... [more]
gi|567990042|gb|ETL40279.1|4.450e-6449.38hypothetical protein L916_08506 [Phytophthora para... [more]
gi|570327727|gb|ETO75675.1|4.497e-6449.38hypothetical protein F444_08802 [Phytophthora para... [more]
gi|567961321|gb|ETK86866.1|4.692e-6449.38hypothetical protein L915_08576 [Phytophthora para... [more]
gi|570985543|gb|ETP44804.1|6.516e-6449.38hypothetical protein F442_08681 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5483rna5483Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications