EWM25216.1, cds5457 (CDS) Nannochloropsis gaditana

Overview
NameEWM25216.1
Unique Namecds5457
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:25839..26229 +
Alignment locationCM002466.1:26397..26464 +
Alignment locationCM002466.1:26550..26750 +
Alignment locationCM002466.1:27145..27241 +
Alignment locationCM002466.1:27404..27462 +
Alignment locationCM002466.1:27756..27789 +
Alignment locationCM002466.1:27975..28109 +
Alignment locationCM002466.1:28249..28379 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25216.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100751g2.1614.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:25839..26229 +
CM002466.1supercontigCM002466.1:26397..26464 +
CM002466.1supercontigCM002466.1:26550..26750 +
CM002466.1supercontigCM002466.1:27145..27241 +
CM002466.1supercontigCM002466.1:27404..27462 +
CM002466.1supercontigCM002466.1:27756..27789 +
CM002466.1supercontigCM002466.1:27975..28109 +
CM002466.1supercontigCM002466.1:28249..28379 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM25216.1 vs. NCBI_GenBank
Match: gi|585106899|gb|EWM25216.1| (hypothetical protein Naga_100751g2 [Nannochloropsis gaditana])

HSP 1 Score: 755.362 bits (1949), Expect = 0.000e+0
Identity = 371/371 (100.00%), Postives = 371/371 (100.00%), Query Frame = 0
Query:    1 MPQSPTRKAPLNSSTSSPSSSALYSSLTQQRCVKYENSFSATLSSVSNEQSQTNVVVEEGTQSRREEMKGEEDAEEEEEEEEEEEEEEEEEEEEERRRKKNASLHTRHVQLQALVEKRILNLDYIRKVHKGGQYWLHTVLLSQNVIHHYVRSQVPSSRALVFFHLGVSVFPLLEAPSALRPHPHSGGESESTTVSEGEERRLSGKEECISQLRSLAQLFEEMEYHTSTGALQAMKFLLAKSIDTPFPEQAPEGSLEPINPRIVRFSNEVVFKNFGAPYIPFPLDYLEVLDSLCHTLALLYRQLGRRHAASLERDAALFEVLVKIDAKVGKAPHHQSHRQGIDIFGDEARKARIRGLAIVNKEEQETKHASM 371
            MPQSPTRKAPLNSSTSSPSSSALYSSLTQQRCVKYENSFSATLSSVSNEQSQTNVVVEEGTQSRREEMKGEEDAEEEEEEEEEEEEEEEEEEEEERRRKKNASLHTRHVQLQALVEKRILNLDYIRKVHKGGQYWLHTVLLSQNVIHHYVRSQVPSSRALVFFHLGVSVFPLLEAPSALRPHPHSGGESESTTVSEGEERRLSGKEECISQLRSLAQLFEEMEYHTSTGALQAMKFLLAKSIDTPFPEQAPEGSLEPINPRIVRFSNEVVFKNFGAPYIPFPLDYLEVLDSLCHTLALLYRQLGRRHAASLERDAALFEVLVKIDAKVGKAPHHQSHRQGIDIFGDEARKARIRGLAIVNKEEQETKHASM
Sbjct:    1 MPQSPTRKAPLNSSTSSPSSSALYSSLTQQRCVKYENSFSATLSSVSNEQSQTNVVVEEGTQSRREEMKGEEDAEEEEEEEEEEEEEEEEEEEEERRRKKNASLHTRHVQLQALVEKRILNLDYIRKVHKGGQYWLHTVLLSQNVIHHYVRSQVPSSRALVFFHLGVSVFPLLEAPSALRPHPHSGGESESTTVSEGEERRLSGKEECISQLRSLAQLFEEMEYHTSTGALQAMKFLLAKSIDTPFPEQAPEGSLEPINPRIVRFSNEVVFKNFGAPYIPFPLDYLEVLDSLCHTLALLYRQLGRRHAASLERDAALFEVLVKIDAKVGKAPHHQSHRQGIDIFGDEARKARIRGLAIVNKEEQETKHASM 371          
BLAST of EWM25216.1 vs. NCBI_GenBank
Match: gi|566034516|gb|ETI57427.1| (hypothetical protein, variant 1 [Phytophthora parasitica P1569] >gi|568029639|gb|ETM03560.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568060304|gb|ETM56843.1| hypothetical protein, variant 1 [Phytophthora parasitica])

HSP 1 Score: 105.145 bits (261), Expect = 1.429e-21
Identity = 70/240 (29.17%), Postives = 118/240 (49.17%), Query Frame = 0
Query:  100 KNASLHTRHVQLQALVEKRILNLDYIRKVHKGGQYWLHTVLLSQNVIHHYVRSQVPSSRALVFFHLGVSVFPLLEAPSALRPHPHSGGESESTTVSEGEERRLSGKEECISQLRSLAQLFEEMEYHTSTGALQAMKFLLAKSIDTPFP---EQAPEGSL-EPINPRIVRFSNEVVFKNFGAPYIPFPLDYLEVLDSLCHTLALLYRQLGRRHAASLERDAALFEVLVKIDAKVGKAPHHQ 335
            +  S   R   L+ LV+ R  + +Y++ +H+G  YWL+  LL +  + ++V  +    R   FF+LG+ +  L                     V E     L   + C        QL EE+E++ S+  +Q MK ++A S     P   E +P+ S  EP  P + +++   V++    P IPFPLDY E+L SLC  LAL+Y +L   ++AS   +  LF+ +++ D ++ K PH++
Sbjct:  203 RQVSAQQRMRILEDLVQHRRSDWNYLKAMHEGSNYWLNVALLREQQVMNHVGYKQSIRRGAQFFYLGIGLGRL---------------------VGESTHPELLAMDCC--------QLLEELEFYFSSSTVQGMKLMVATSSTLHEPLGKENSPQYSADEPFRPTMHKWNQRPVYRRLMTPPIPFPLDYREILLSLCDILALIYSKLVEDNSAS--ENLNLFQSIIRFDDRI-KVPHYE 410          
BLAST of EWM25216.1 vs. NCBI_GenBank
Match: gi|567972191|gb|ETK97179.1| (hypothetical protein, variant 1 [Phytophthora parasitica] >gi|568000507|gb|ETL50522.1| hypothetical protein, variant 1 [Phytophthora parasitica] >gi|570962210|gb|ETP27189.1| hypothetical protein, variant 1 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 105.145 bits (261), Expect = 1.457e-21
Identity = 70/240 (29.17%), Postives = 118/240 (49.17%), Query Frame = 0
Query:  100 KNASLHTRHVQLQALVEKRILNLDYIRKVHKGGQYWLHTVLLSQNVIHHYVRSQVPSSRALVFFHLGVSVFPLLEAPSALRPHPHSGGESESTTVSEGEERRLSGKEECISQLRSLAQLFEEMEYHTSTGALQAMKFLLAKSIDTPFP---EQAPEGSL-EPINPRIVRFSNEVVFKNFGAPYIPFPLDYLEVLDSLCHTLALLYRQLGRRHAASLERDAALFEVLVKIDAKVGKAPHHQ 335
            +  S   R   L+ LV+ R  + +Y++ +H+G  YWL+  LL +  + ++V  +    R   FF+LG+ +  L                     V E     L   + C        QL EE+E++ S+  +Q MK ++A S     P   E +P+ S  EP  P + +++   V++    P IPFPLDY E+L SLC  LAL+Y +L   ++AS   +  LF+ +++ D ++ K PH++
Sbjct:  203 RQVSAQQRMRILEDLVQHRRSDWNYLKAMHEGSNYWLNVALLREQQVMNHVGYKQSIRRGAQFFYLGIGLGRL---------------------VGESTHPELLAMDCC--------QLLEELEFYFSSSTVQGMKLMVATSSTLHEPLGKENSPQYSADEPFRPTMHKWNQRPVYRRLMTPPIPFPLDYREILLSLCDILALIYSKLVEDNSAS--ENLNLFQSIIRFDDRI-KVPHYE 410          
BLAST of EWM25216.1 vs. NCBI_GenBank
Match: gi|570999065|gb|ETP55152.1| (hypothetical protein, variant 1 [Phytophthora parasitica P10297])

HSP 1 Score: 105.145 bits (261), Expect = 1.560e-21
Identity = 70/240 (29.17%), Postives = 118/240 (49.17%), Query Frame = 0
Query:  100 KNASLHTRHVQLQALVEKRILNLDYIRKVHKGGQYWLHTVLLSQNVIHHYVRSQVPSSRALVFFHLGVSVFPLLEAPSALRPHPHSGGESESTTVSEGEERRLSGKEECISQLRSLAQLFEEMEYHTSTGALQAMKFLLAKSIDTPFP---EQAPEGSL-EPINPRIVRFSNEVVFKNFGAPYIPFPLDYLEVLDSLCHTLALLYRQLGRRHAASLERDAALFEVLVKIDAKVGKAPHHQ 335
            +  S   R   L+ LV+ R  + +Y++ +H+G  YWL+  LL +  + ++V  +    R   FF+LG+ +  L                     V E     L   + C        QL EE+E++ S+  +Q MK ++A S     P   E +P+ S  EP  P + +++   V++    P IPFPLDY E+L SLC  LAL+Y +L   ++AS   +  LF+ +++ D ++ K PH++
Sbjct:  203 RQVSAQQRMRILEDLVQHRRSDWNYLKAMHEGSNYWLNVALLREQQVMNHVGYKQSIRRGAQFFYLGIGLGRL---------------------VGESTHPELLAMDCC--------QLLEELEFYFSSSTVQGMKLMVATSSTLHEPLGKENSPQYSADEPFRPTMHKWNQRPVYRRLMTPPIPFPLDYREILLSLCDILALIYSKLVEDNSAS--ENLNLFQSIIRFDDRI-KVPHYE 410          
BLAST of EWM25216.1 vs. NCBI_GenBank
Match: gi|301112513|ref|XP_002998027.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262112321|gb|EEY70373.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 103.605 bits (257), Expect = 8.938e-21
Identity = 67/227 (29.52%), Postives = 113/227 (49.78%), Query Frame = 0
Query:  111 LQALVEKRILNLDYIRKVHKGGQYWLHTVLLSQNVIHHYVRSQVPSSRALVFFHLGVSVFPLLEAPSALRPHPHSGGESESTTVSEGEERRLSGKEECISQLRSLAQLFEEMEYHTSTGALQAMKFLLAKS------IDTPFPEQAPEGSL-EPINPRIVRFSNEVVFKNFGAPYIPFPLDYLEVLDSLCHTLALLYRQLGRRHAASLERDAALFEVLVKIDAKVGK 330
            L+ LV+ R  + +Y++ +H+G  YWL+  LL +  + ++V  +    R   FF+LG+ +  L                     V E     L   + C        QL EE+E++ S+  +Q MK ++A S      +DT   E +P+ S  EP  P + +++   V++    P IPFPLDY E+L SLC  LAL+Y +L   ++AS   +  LF+ +++ D ++ K
Sbjct:  215 LEDLVQHRRSDWNYLKAMHEGSNYWLNVALLREQQVMNHVGYKQSIRRGAQFFYLGIGLGRL---------------------VGESTHPELLAMDCC--------QLLEELEFYFSSSTVQGMKMMVATSSTLHEPLDT---ENSPQYSADEPFRPTMHKWNQRPVYRRLLTPPIPFPLDYREILLSLCDILALIYSKLVEDNSAS--ENLNLFQSIIRFDDRIKK 407          
BLAST of EWM25216.1 vs. NCBI_GenBank
Match: gi|570999064|gb|ETP55151.1| (hypothetical protein F442_00267 [Phytophthora parasitica P10297])

HSP 1 Score: 103.219 bits (256), Expect = 1.084e-20
Identity = 68/235 (28.94%), Postives = 114/235 (48.51%), Query Frame = 0
Query:  100 KNASLHTRHVQLQALVEKRILNLDYIRKVHKGGQYWLHTVLLSQNVIHHYVRSQVPSSRALVFFHLGVSVFPLLEAPSALRPHPHSGGESESTTVSEGEERRLSGKEECISQLRSLAQLFEEMEYHTSTGALQAMKFLLAKSIDTPFP---EQAPEGSL-EPINPRIVRFSNEVVFKNFGAPYIPFPLDYLEVLDSLCHTLALLYRQLGRRHAASLERDAALFEVLVKIDAKVGK 330
            +  S   R   L+ LV+ R  + +Y++ +H+G  YWL+  LL +  + ++V  +    R   FF+LG+ +  L                     V E     L   + C        QL EE+E++ S+  +Q MK ++A S     P   E +P+ S  EP  P + +++   V++    P IPFPLDY E+L SLC  LAL+Y +L   ++AS   +  LF+ +++ D ++ K
Sbjct:  203 RQVSAQQRMRILEDLVQHRRSDWNYLKAMHEGSNYWLNVALLREQQVMNHVGYKQSIRRGAQFFYLGIGLGRL---------------------VGESTHPELLAMDCC--------QLLEELEFYFSSSTVQGMKLMVATSSTLHEPLGKENSPQYSADEPFRPTMHKWNQRPVYRRLMTPPIPFPLDYREILLSLCDILALIYSKLVEDNSAS--ENLNLFQSIIRFDDRIKK 406          
BLAST of EWM25216.1 vs. NCBI_GenBank
Match: gi|567972190|gb|ETK97178.1| (hypothetical protein L915_00245 [Phytophthora parasitica] >gi|568000506|gb|ETL50521.1| hypothetical protein L916_00248 [Phytophthora parasitica] >gi|570962209|gb|ETP27188.1| hypothetical protein F441_00269 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 103.219 bits (256), Expect = 1.115e-20
Identity = 68/235 (28.94%), Postives = 114/235 (48.51%), Query Frame = 0
Query:  100 KNASLHTRHVQLQALVEKRILNLDYIRKVHKGGQYWLHTVLLSQNVIHHYVRSQVPSSRALVFFHLGVSVFPLLEAPSALRPHPHSGGESESTTVSEGEERRLSGKEECISQLRSLAQLFEEMEYHTSTGALQAMKFLLAKSIDTPFP---EQAPEGSL-EPINPRIVRFSNEVVFKNFGAPYIPFPLDYLEVLDSLCHTLALLYRQLGRRHAASLERDAALFEVLVKIDAKVGK 330
            +  S   R   L+ LV+ R  + +Y++ +H+G  YWL+  LL +  + ++V  +    R   FF+LG+ +  L                     V E     L   + C        QL EE+E++ S+  +Q MK ++A S     P   E +P+ S  EP  P + +++   V++    P IPFPLDY E+L SLC  LAL+Y +L   ++AS   +  LF+ +++ D ++ K
Sbjct:  203 RQVSAQQRMRILEDLVQHRRSDWNYLKAMHEGSNYWLNVALLREQQVMNHVGYKQSIRRGAQFFYLGIGLGRL---------------------VGESTHPELLAMDCC--------QLLEELEFYFSSSTVQGMKLMVATSSTLHEPLGKENSPQYSADEPFRPTMHKWNQRPVYRRLMTPPIPFPLDYREILLSLCDILALIYSKLVEDNSAS--ENLNLFQSIIRFDDRIKK 406          
BLAST of EWM25216.1 vs. NCBI_GenBank
Match: gi|566034515|gb|ETI57426.1| (hypothetical protein F443_00284 [Phytophthora parasitica P1569] >gi|568029638|gb|ETM03559.1| hypothetical protein L917_00234 [Phytophthora parasitica] >gi|568060303|gb|ETM56842.1| hypothetical protein L914_00252 [Phytophthora parasitica])

HSP 1 Score: 103.219 bits (256), Expect = 1.148e-20
Identity = 68/235 (28.94%), Postives = 114/235 (48.51%), Query Frame = 0
Query:  100 KNASLHTRHVQLQALVEKRILNLDYIRKVHKGGQYWLHTVLLSQNVIHHYVRSQVPSSRALVFFHLGVSVFPLLEAPSALRPHPHSGGESESTTVSEGEERRLSGKEECISQLRSLAQLFEEMEYHTSTGALQAMKFLLAKSIDTPFP---EQAPEGSL-EPINPRIVRFSNEVVFKNFGAPYIPFPLDYLEVLDSLCHTLALLYRQLGRRHAASLERDAALFEVLVKIDAKVGK 330
            +  S   R   L+ LV+ R  + +Y++ +H+G  YWL+  LL +  + ++V  +    R   FF+LG+ +  L                     V E     L   + C        QL EE+E++ S+  +Q MK ++A S     P   E +P+ S  EP  P + +++   V++    P IPFPLDY E+L SLC  LAL+Y +L   ++AS   +  LF+ +++ D ++ K
Sbjct:  203 RQVSAQQRMRILEDLVQHRRSDWNYLKAMHEGSNYWLNVALLREQQVMNHVGYKQSIRRGAQFFYLGIGLGRL---------------------VGESTHPELLAMDCC--------QLLEELEFYFSSSTVQGMKLMVATSSTLHEPLGKENSPQYSADEPFRPTMHKWNQRPVYRRLMTPPIPFPLDYREILLSLCDILALIYSKLVEDNSAS--ENLNLFQSIIRFDDRIKK 406          
BLAST of EWM25216.1 vs. NCBI_GenBank
Match: gi|298710175|emb|CBJ26250.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 99.7525 bits (247), Expect = 2.862e-20
Identity = 73/251 (29.08%), Postives = 118/251 (47.01%), Query Frame = 0
Query:  107 RHVQLQALVEKRILNLDYIRKVHKGGQYWLHTVLLSQNVIHHYVRSQVPSSRALVFFHLGVSVFPLLEAPSALRPHPHSGGESESTTVSEGEERRLSGKEECISQLRSLAQLFEEMEYHTSTGAL--QAMKFLLAKSIDT--------PFPEQAPEGSLEPINPRIVRFSNEVVFKNFGAPYIPFPLDYLEVLDSLCHTLALLYRQLGRRHAASLERDAALFEVLVKIDAKVGKAPHHQSHRQGIDIFGDE 347
            R V+++ALV KR     Y++K H+ G +WL+ V L++        +++ S R L  F+LGV +  LL++   L                                +R + QL EE EYH +   +   ++K +LAK+ID            E+      E I  R+ +F+NEVV++N   P +PF LDYLEV+ SLC  +  +Y +          ++A +++ LVK+D K+    HH      I++F  E
Sbjct:   69 RMVKVEALVGKRKRFFSYLKKTHEEGGFWLNCVQLTRQGDLAVYAAELSSQRILRLFYLGVGLAKLLQSKGGLE------------------------------LIRGILQLLEEWEYHFALAGVAHHSVKAMLAKNIDNLDHSARGRDASEEGGGKHQEQIVARLKKFNNEVVYENLLTPEVPFSLDYLEVVFSLCEVMCRIYAKFVEEECY---KNAFVYDGLVKVDNKI---KHHI-----INVFAKE 278          
BLAST of EWM25216.1 vs. NCBI_GenBank
Match: gi|675161921|ref|XP_008889845.1| (hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|568109070|gb|ETN23677.1| hypothetical protein, variant 1 [Phytophthora parasitica INRA-310])

HSP 1 Score: 101.679 bits (252), Expect = 3.149e-20
Identity = 68/240 (28.33%), Postives = 117/240 (48.75%), Query Frame = 0
Query:  100 KNASLHTRHVQLQALVEKRILNLDYIRKVHKGGQYWLHTVLLSQNVIHHYVRSQVPSSRALVFFHLGVSVFPLLEAPSALRPHPHSGGESESTTVSEGEERRLSGKEECISQLRSLAQLFEEMEYHTSTGALQAMKFLLAKSIDTPFP---EQAPEGSL-EPINPRIVRFSNEVVFKNFGAPYIPFPLDYLEVLDSLCHTLALLYRQLGRRHAASLERDAALFEVLVKIDAKVGKAPHHQ 335
            +  S   R   L+ LV+ R  + +Y++ +H+G  YWL+  LL +  + ++V  +    R   FF+LG+ +  L                     V E     L   + C        QL EE+E++ S+  +Q MK ++A S     P   E +P+ S  EP  P + +++    ++    P IPFPLDY E+L SLC  LAL+Y +L   ++AS   +  LF+ +++ D ++ K P+++
Sbjct:  203 RQVSAQQRMRILEDLVQHRRSDWNYLKAMHEGSNYWLNVALLREQQVMNHVGYKQSIRRGAQFFYLGIGLGRL---------------------VGESTHPELLAMDCC--------QLLEELEFYFSSSTVQGMKLMVATSSTLHEPLGKENSPQYSADEPFRPTMHKWNQRPAYRRLMTPPIPFPLDYREILLSLCDILALIYSKLVEDNSAS--ENLNLFQSIIRFDDRI-KVPYYE 410          
The following BLAST results are available for this feature:
BLAST of EWM25216.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106899|gb|EWM25216.1|0.000e+0100.00hypothetical protein Naga_100751g2 [Nannochloropsi... [more]
gi|566034516|gb|ETI57427.1|1.429e-2129.17hypothetical protein, variant 1 [Phytophthora para... [more]
gi|567972191|gb|ETK97179.1|1.457e-2129.17hypothetical protein, variant 1 [Phytophthora para... [more]
gi|570999065|gb|ETP55152.1|1.560e-2129.17hypothetical protein, variant 1 [Phytophthora para... [more]
gi|301112513|ref|XP_002998027.1|8.938e-2129.52conserved hypothetical protein [Phytophthora infes... [more]
gi|570999064|gb|ETP55151.1|1.084e-2028.94hypothetical protein F442_00267 [Phytophthora para... [more]
gi|567972190|gb|ETK97178.1|1.115e-2028.94hypothetical protein L915_00245 [Phytophthora para... [more]
gi|566034515|gb|ETI57426.1|1.148e-2028.94hypothetical protein F443_00284 [Phytophthora para... [more]
gi|298710175|emb|CBJ26250.1|2.862e-2029.08conserved unknown protein [Ectocarpus siliculosus][more]
gi|675161921|ref|XP_008889845.1|3.149e-2028.33hypothetical protein, variant 1 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5470rna5470Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications