EWM25263.1, cds5410 (CDS) Nannochloropsis gaditana

Overview
NameEWM25263.1
Unique Namecds5410
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002465.1:965354..965591 +
Alignment locationCM002465.1:965884..965995 +

Link to JBrowse

Properties
Property NameValue
End range.
End range965995
Protein idEWM25263.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101559g2.6921.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002465.1supercontigCM002465.1:965354..965591 +
CM002465.1supercontigCM002465.1:965884..965995 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of EWM25263.1 vs. NCBI_GenBank
Match: gi|585106985|gb|EWM25263.1| (hypothetical protein Naga_101559g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 236.884 bits (603), Expect = 4.709e-79
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0 
Query:    1 MRQSRHTAAASSRITRLLPVATISRSKQPRRVSLVLLVVHCYFYSLVSCVSEAFVFPATGARGSCRTPGQITRCPPPHLGKTMERLTSGKHRGTAGPYRSPLRFKKKDSDHDRWGR 116
            MRQSRHTAAASSRITRLLPVATISRSKQPRRVSLVLLVVHCYFYSLVSCVSEAFVFPATGARGSCRTPGQITRCPPPHLGKTMERLTSGKHRGTAGPYRSPLRFKKKDSDHDRWGR
Sbjct:    1 MRQSRHTAAASSRITRLLPVATISRSKQPRRVSLVLLVVHCYFYSLVSCVSEAFVFPATGARGSCRTPGQITRCPPPHLGKTMERLTSGKHRGTAGPYRSPLRFKKKDSDHDRWGR 116
The following BLAST results are available for this feature:
BLAST of EWM25263.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585106985|gb|EWM25263.1|4.709e-79100.00hypothetical protein Naga_101559g2, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5423rna5423Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications